RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 MS4A12Q9NXJ0 267 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 OR5V1Q9UGF6 321 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 CD300AQ9UGN4 299 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 RPUSD1Q9UJJ7 312 aaKnown RBP1.33□□□□□ -2.2
SCFD1-217ENST00000555953 PHLDA3Q9Y5J5 127 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 U3KQK5 164 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 BRD4O60885 1362 aaPredicted RBP1.33□□□□□ -2.2
SCFD1-217ENST00000555953 TRPC5OSA6NMA1 111 aa1.32□□□□□ -2.2
SCFD1-217ENST00000555953 ZNF878C9JN71 531 aa1.32□□□□□ -2.2
SCFD1-217ENST00000555953 E7EQL1 145 aa1.32□□□□□ -2.2
SCFD1-217ENST00000555953 SMLR1H3BR10 107 aa1.32□□□□□ -2.2
SCFD1-217ENST00000555953 LIN7AO14910 233 aaPredicted RBP1.32□□□□□ -2.2
SCFD1-217ENST00000555953 LECT2O14960 151 aa1.32□□□□□ -2.2
SCFD1-217ENST00000555953 SH2D1AO60880 128 aa1.32□□□□□ -2.2
SCFD1-217ENST00000555953 CD99P14209 185 aa1.32□□□□□ -2.2
SCFD1-217ENST00000555953 ACTR1BP42025 376 aa1.32□□□□□ -2.2
SCFD1-217ENST00000555953 STC1P52823 247 aa1.32□□□□□ -2.2
SCFD1-217ENST00000555953 RAB8AP61006 207 aa1.32□□□□□ -2.2
SCFD1-217ENST00000555953 RAB2AP61019 212 aa1.32□□□□□ -2.2
SCFD1-217ENST00000555953 APOFQ13790 326 aa1.32□□□□□ -2.2
SCFD1-217ENST00000555953 C10orf91Q5T1B1 145 aa1.32□□□□□ -2.2
SCFD1-217ENST00000555953 TTC33Q6PID6 262 aaPredicted RBP1.32□□□□□ -2.2
SCFD1-217ENST00000555953 VN1R4Q7Z5H5 301 aa1.32□□□□□ -2.2
SCFD1-217ENST00000555953 MTERF4Q7Z6M4 381 aaKnown RBP1.32□□□□□ -2.2
SCFD1-217ENST00000555953 HS3ST5Q8IZT8 346 aa1.32□□□□□ -2.2
SCFD1-217ENST00000555953 OR8K1Q8NGG5 319 aa1.32□□□□□ -2.2
SCFD1-217ENST00000555953 OR5D18Q8NGL1 313 aa1.32□□□□□ -2.2
SCFD1-217ENST00000555953 OR4P4Q8NGL7 312 aa1.32□□□□□ -2.2
SCFD1-217ENST00000555953 HIST1H2BAQ96A08 127 aa1.32□□□□□ -2.2
SCFD1-217ENST00000555953 RAD51AP1Q96B01 352 aa1.32□□□□□ -2.2
SCFD1-217ENST00000555953 GALMQ96C23 342 aa1.32□□□□□ -2.2
SCFD1-217ENST00000555953 ATP6V1G3Q96LB4 118 aa1.32□□□□□ -2.2
SCFD1-217ENST00000555953 TRNT1Q96Q11 434 aaKnown RBP1.32□□□□□ -2.2
SCFD1-217ENST00000555953 TSSK6Q9BXA6 273 aa1.32□□□□□ -2.2
SCFD1-217ENST00000555953 ARL6Q9H0F7 186 aa1.32□□□□□ -2.2
SCFD1-217ENST00000555953 FBXL15Q9H469 300 aa1.32□□□□□ -2.2
SCFD1-217ENST00000555953 SPACA1Q9HBV2 294 aa1.32□□□□□ -2.2
SCFD1-217ENST00000555953 FBXL3Q9UKT7 428 aa1.32□□□□□ -2.2
SCFD1-217ENST00000555953 CACNA1SQ13698 1873 aa1.32□□□□□ -2.2
SCFD1-217ENST00000555953 TRPM3Q9HCF6 1732 aaPredicted RBP1.32□□□□□ -2.2
SCFD1-217ENST00000555953 COL18A1P39060 1754 aa1.31□□□□□ -2.2
SCFD1-217ENST00000555953 LCTP09848 1927 aa1.31□□□□□ -2.2
SCFD1-217ENST00000555953 A0A1W2PNM2 257 aa1.31□□□□□ -2.2
SCFD1-217ENST00000555953 F5H5K5 113 aa1.31□□□□□ -2.2
SCFD1-217ENST00000555953 F8VZ95 297 aa1.31□□□□□ -2.2
SCFD1-217ENST00000555953 J3QLI3 93 aa1.31□□□□□ -2.2
SCFD1-217ENST00000555953 M0QYV0 167 aa1.31□□□□□ -2.2
SCFD1-217ENST00000555953 EEF1E1O43324 174 aaKnown RBP1.31□□□□□ -2.2
SCFD1-217ENST00000555953 DENRO43583 198 aaKnown RBP1.31□□□□□ -2.2
SCFD1-217ENST00000555953 RD3LP0DJH9 198 aa1.31□□□□□ -2.2
SCFD1-217ENST00000555953 CTSEP14091 401 aa1.31□□□□□ -2.2
SCFD1-217ENST00000555953 SYT1P21579 422 aa1.31□□□□□ -2.2
SCFD1-217ENST00000555953 GADD45AP24522 165 aa1.31□□□□□ -2.2
SCFD1-217ENST00000555953 GZMMP51124 257 aa1.31□□□□□ -2.2
SCFD1-217ENST00000555953 DLX6P56179 175 aa1.31□□□□□ -2.2
SCFD1-217ENST00000555953 GTF2BQ00403 316 aa1.31□□□□□ -2.2
SCFD1-217ENST00000555953 PMS2P3Q13401 168 aa1.31□□□□□ -2.2
SCFD1-217ENST00000555953 CST6Q15828 149 aa1.31□□□□□ -2.2
SCFD1-217ENST00000555953 NIPAL1Q6NVV3 410 aa1.31□□□□□ -2.2
SCFD1-217ENST00000555953 LYPD6Q86Y78 171 aa1.31□□□□□ -2.2
SCFD1-217ENST00000555953 SLC13A5Q86YT5 568 aaPredicted RBP1.31□□□□□ -2.2
SCFD1-217ENST00000555953 ZBTB8OSQ8IWT0 167 aa1.31□□□□□ -2.2
SCFD1-217ENST00000555953 ATP6V1C2Q8NEY4 427 aa1.31□□□□□ -2.2
SCFD1-217ENST00000555953 OR9I1Q8NGQ6 314 aa1.31□□□□□ -2.2
SCFD1-217ENST00000555953 CD200R1Q8TD46 325 aa1.31□□□□□ -2.2
SCFD1-217ENST00000555953 TAMM41Q96BW9 452 aa1.31□□□□□ -2.2
SCFD1-217ENST00000555953 TMEM56Q96MV1 263 aa1.31□□□□□ -2.2
SCFD1-217ENST00000555953 FAM210AQ96ND0 272 aa1.31□□□□□ -2.2
SCFD1-217ENST00000555953 LLPHQ9BRT6 129 aaKnown RBP1.31□□□□□ -2.2
SCFD1-217ENST00000555953 CHST5Q9GZS9 411 aa1.31□□□□□ -2.2
SCFD1-217ENST00000555953 ZNF286AQ9HBT8 521 aa1.31□□□□□ -2.2
SCFD1-217ENST00000555953 KCNIP2Q9NS61 270 aa1.31□□□□□ -2.2
SCFD1-217ENST00000555953 SLC23A2Q9UGH3 650 aa1.31□□□□□ -2.2
SCFD1-217ENST00000555953 CLUHO75153 1309 aa1.31□□□□□ -2.2
SCFD1-217ENST00000555953 SHANK3Q9BYB0 1731 aa1.31□□□□□ -2.2
SCFD1-217ENST00000555953 IGKV1-12A0A0C4DH73 117 aa1.3□□□□□ -2.2
SCFD1-217ENST00000555953 B4DEV8 164 aa1.3□□□□□ -2.2
SCFD1-217ENST00000555953 TOR1AO14656 332 aa1.3□□□□□ -2.2
SCFD1-217ENST00000555953 TOX3O15405 576 aaPredicted RBP1.3□□□□□ -2.2
SCFD1-217ENST00000555953 MPZL2O60487 215 aa1.3□□□□□ -2.2
SCFD1-217ENST00000555953 DEDDO75618 318 aa1.3□□□□□ -2.2
SCFD1-217ENST00000555953 IGKV1D-12P01611 117 aa1.3□□□□□ -2.2
SCFD1-217ENST00000555953 FBP1P09467 338 aa1.3□□□□□ -2.2
SCFD1-217ENST00000555953 ZNF22P17026 224 aaPredicted RBP1.3□□□□□ -2.2
SCFD1-217ENST00000555953 PSMA1P25786 263 aaKnown RBP1.3□□□□□ -2.2
SCFD1-217ENST00000555953 FUSP35637 526 aaKnown RBP eCLIP1.3□□□□□ -2.2
SCFD1-217ENST00000555953 DYNLL1P63167 89 aaKnown RBP1.3□□□□□ -2.2
SCFD1-217ENST00000555953 ZNHIT3Q15649 155 aaPredicted RBP1.3□□□□□ -2.2
SCFD1-217ENST00000555953 HES3Q5TGS1 186 aa1.3□□□□□ -2.2
SCFD1-217ENST00000555953 TCF23Q7RTU1 214 aa1.3□□□□□ -2.2
SCFD1-217ENST00000555953 BOD1L2Q8IYS8 172 aa1.3□□□□□ -2.2
SCFD1-217ENST00000555953 OR7G1Q8NGA0 311 aa1.3□□□□□ -2.2
SCFD1-217ENST00000555953 OR5K1Q8NHB7 308 aa1.3□□□□□ -2.2
SCFD1-217ENST00000555953 UPF3BQ9BZI7 483 aaKnown RBP1.3□□□□□ -2.2
SCFD1-217ENST00000555953 NDEL1Q9GZM8 345 aa1.3□□□□□ -2.2
SCFD1-217ENST00000555953 C11orf49Q9H6J7 331 aa1.3□□□□□ -2.2
SCFD1-217ENST00000555953 METTL17Q9H7H0 456 aaPredicted RBP1.3□□□□□ -2.2
SCFD1-217ENST00000555953 UBQLN4Q9NRR5 601 aa1.3□□□□□ -2.2
SCFD1-217ENST00000555953 TMEM216Q9P0N5 145 aa1.3□□□□□ -2.2
SCFD1-217ENST00000555953 MTCH2Q9Y6C9 303 aa1.3□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms