RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 MT-ND4P03905 459 aa17.32■□□□□ 0.36
HDDC3-203ENST00000494993 GTF2F2P13984 249 aa17.32■□□□□ 0.36
HDDC3-203ENST00000494993 FOXE3Q13461 319 aa17.32■□□□□ 0.36
HDDC3-203ENST00000494993 SMN1Q16637 294 aaKnown RBP17.32■□□□□ 0.36
HDDC3-203ENST00000494993 DEFB136Q30KP8 78 aa17.32■□□□□ 0.36
HDDC3-203ENST00000494993 SLC22A6Q4U2R8 563 aa17.32■□□□□ 0.36
HDDC3-203ENST00000494993 TMPRSS11AQ6ZMR5 421 aa17.32■□□□□ 0.36
HDDC3-203ENST00000494993 LCNL1Q6ZST4 164 aa17.32■□□□□ 0.36
HDDC3-203ENST00000494993 RNF152Q8N8N0 203 aa17.32■□□□□ 0.36
HDDC3-203ENST00000494993 SMIM19Q96E16 107 aa17.32■□□□□ 0.36
HDDC3-203ENST00000494993 S1PR3Q99500 378 aa17.32■□□□□ 0.36
HDDC3-203ENST00000494993 ZNF184Q99676 751 aaPredicted RBP17.32■□□□□ 0.36
HDDC3-203ENST00000494993 RASL11BQ9BPW5 248 aa17.32■□□□□ 0.36
HDDC3-203ENST00000494993 ZNF736B4DX44 427 aaPredicted RBP17.31■□□□□ 0.36
HDDC3-203ENST00000494993 SLC31A2O15432 143 aa17.31■□□□□ 0.36
HDDC3-203ENST00000494993 RRP9O43818 475 aaKnown RBP17.31■□□□□ 0.36
HDDC3-203ENST00000494993 WBP4O75554 376 aaKnown RBP17.31■□□□□ 0.36
HDDC3-203ENST00000494993 ELANEP08246 267 aa17.31■□□□□ 0.36
HDDC3-203ENST00000494993 IGFBP3P17936 291 aaPredicted RBP17.31■□□□□ 0.36
HDDC3-203ENST00000494993 DCKP27707 260 aa17.31■□□□□ 0.36
HDDC3-203ENST00000494993 CDX1P47902 265 aaPredicted RBP17.31■□□□□ 0.36
HDDC3-203ENST00000494993 RIPK1Q13546 671 aa17.31■□□□□ 0.36
HDDC3-203ENST00000494993 KIR2DS1Q14954 304 aa17.31■□□□□ 0.36
HDDC3-203ENST00000494993 STX19Q8N4C7 294 aa17.31■□□□□ 0.36
HDDC3-203ENST00000494993 OR8H1Q8NGG4 311 aa17.31■□□□□ 0.36
HDDC3-203ENST00000494993 OR5M8Q8NGP6 311 aa17.31■□□□□ 0.36
HDDC3-203ENST00000494993 OR13C5Q8NGS8 318 aa17.31■□□□□ 0.36
HDDC3-203ENST00000494993 OGG1O15527 345 aa17.3■□□□□ 0.36
HDDC3-203ENST00000494993 TXNL1O43396 289 aa17.3■□□□□ 0.36
HDDC3-203ENST00000494993 LUMP51884 338 aaPredicted RBP17.3■□□□□ 0.36
HDDC3-203ENST00000494993 ZNF137PP52743 207 aa17.3■□□□□ 0.36
HDDC3-203ENST00000494993 SLC25A48Q6ZT89 311 aaKnown RBP17.3■□□□□ 0.36
HDDC3-203ENST00000494993 C10orf67Q8IYJ2 551 aa17.3■□□□□ 0.36
HDDC3-203ENST00000494993 FAM71E2Q8N5Q1 922 aa17.3■□□□□ 0.36
HDDC3-203ENST00000494993 ZNF439Q8NDP4 499 aa17.3■□□□□ 0.36
HDDC3-203ENST00000494993 HSPB9Q9BQS6 159 aa17.3■□□□□ 0.36
HDDC3-203ENST00000494993 SPACA1Q9HBV2 294 aa17.3■□□□□ 0.36
HDDC3-203ENST00000494993 RCC2Q9P258 522 aaKnown RBP17.3■□□□□ 0.36
HDDC3-203ENST00000494993 TRBV5-5A0A0J9YX44 114 aa17.29■□□□□ 0.36
HDDC3-203ENST00000494993 MAGEA13PA6NCF6 341 aa17.29■□□□□ 0.36
HDDC3-203ENST00000494993 C12orf77C9JDV5 145 aa17.29■□□□□ 0.36
HDDC3-203ENST00000494993 CFHR3Q02985 330 aa17.29■□□□□ 0.36
HDDC3-203ENST00000494993 GPR176Q14439 515 aa17.29■□□□□ 0.36
HDDC3-203ENST00000494993 TMEM30BQ3MIR4 351 aa17.29■□□□□ 0.36
HDDC3-203ENST00000494993 C9orf66Q5T8R8 295 aa17.29■□□□□ 0.36
HDDC3-203ENST00000494993 RAB9BQ9NP90 201 aa17.29■□□□□ 0.36
HDDC3-203ENST00000494993 BABAM2Q9NXR7 383 aa17.29■□□□□ 0.36
HDDC3-203ENST00000494993 TRAPPC2LQ9UL33 140 aa17.29■□□□□ 0.36
HDDC3-203ENST00000494993 MCRIP1C9JLW8 97 aa17.28■□□□□ 0.36
HDDC3-203ENST00000494993 SPINT2O43291 252 aa17.28■□□□□ 0.36
HDDC3-203ENST00000494993 GPX5O75715 221 aa17.28■□□□□ 0.36
HDDC3-203ENST00000494993 LALBAP00709 142 aa17.28■□□□□ 0.36
HDDC3-203ENST00000494993 IGHG4P01861 327 aa17.28■□□□□ 0.36
HDDC3-203ENST00000494993 NHLRC4P0CG21 123 aaPredicted RBP17.28■□□□□ 0.36
HDDC3-203ENST00000494993 VDAC1P21796 283 aa17.28■□□□□ 0.36
HDDC3-203ENST00000494993 ZNF134P52741 427 aa17.28■□□□□ 0.36
HDDC3-203ENST00000494993 F2RL1P55085 397 aa17.28■□□□□ 0.36
HDDC3-203ENST00000494993 SYT6Q5T7P8 510 aaPredicted RBP17.28■□□□□ 0.36
HDDC3-203ENST00000494993 OR4K15Q8NH41 348 aa17.28■□□□□ 0.36
HDDC3-203ENST00000494993 ETAA1Q9NY74 926 aa17.28■□□□□ 0.36
HDDC3-203ENST00000494993 GNG12Q9UBI6 72 aa17.28■□□□□ 0.36
HDDC3-203ENST00000494993 LSM4Q9Y4Z0 139 aaKnown RBP17.28■□□□□ 0.36
HDDC3-203ENST00000494993 SORL1Q92673 2214 aa17.28■□□□□ 0.36
HDDC3-203ENST00000494993 IRGMA1A4Y4 181 aa17.27■□□□□ 0.36
HDDC3-203ENST00000494993 SOX6P35712 828 aa17.27■□□□□ 0.36
HDDC3-203ENST00000494993 VHLP40337 213 aa17.27■□□□□ 0.36
HDDC3-203ENST00000494993 Q499Y3 187 aa17.27■□□□□ 0.36
HDDC3-203ENST00000494993 CT45A1Q5HYN5 189 aa17.27■□□□□ 0.36
HDDC3-203ENST00000494993 C6orf183Q5T699 404 aa17.27■□□□□ 0.36
HDDC3-203ENST00000494993 PQLC1Q8N2U9 271 aa17.27■□□□□ 0.36
HDDC3-203ENST00000494993 ZNF555Q8NEP9 628 aa17.27■□□□□ 0.36
HDDC3-203ENST00000494993 OR10V1Q8NGI7 309 aa17.27■□□□□ 0.36
HDDC3-203ENST00000494993 CT45A3Q8NHU0 189 aa17.27■□□□□ 0.36
HDDC3-203ENST00000494993 C4orf3Q8WVX3 66 aa17.27■□□□□ 0.36
HDDC3-203ENST00000494993 GHSRQ92847 366 aa17.27■□□□□ 0.36
HDDC3-203ENST00000494993 RBMXL1Q96E39 390 aaKnown RBP17.27■□□□□ 0.36
HDDC3-203ENST00000494993 MRPS24Q96EL2 167 aaKnown RBP17.27■□□□□ 0.36
HDDC3-203ENST00000494993 PRR25Q96S07 402 aa17.27■□□□□ 0.36
HDDC3-203ENST00000494993 S100A14Q9HCY8 104 aa17.27■□□□□ 0.36
HDDC3-203ENST00000494993 CKLFQ9UBR5 152 aa17.27■□□□□ 0.36
HDDC3-203ENST00000494993 ZNF580Q9UK33 172 aa17.27■□□□□ 0.36
HDDC3-203ENST00000494993 MRPS28Q9Y2Q9 187 aaKnown RBP17.27■□□□□ 0.36
HDDC3-203ENST00000494993 EXOSC1Q9Y3B2 195 aaKnown RBP17.27■□□□□ 0.36
HDDC3-203ENST00000494993 TRAV8-7A0A075B6U6 113 aa17.26■□□□□ 0.35
HDDC3-203ENST00000494993 HBZP02008 142 aa17.26■□□□□ 0.35
HDDC3-203ENST00000494993 IGF1P05019 195 aa17.26■□□□□ 0.35
HDDC3-203ENST00000494993 MYL12AP19105 171 aa17.26■□□□□ 0.35
HDDC3-203ENST00000494993 FSTP19883 344 aa17.26■□□□□ 0.35
HDDC3-203ENST00000494993 DMKNQ6E0U4 476 aaPredicted RBP17.26■□□□□ 0.35
HDDC3-203ENST00000494993 RAB12Q6IQ22 244 aa17.26■□□□□ 0.35
HDDC3-203ENST00000494993 GLIPR1L1Q6UWM5 242 aa17.26■□□□□ 0.35
HDDC3-203ENST00000494993 GAPTQ8N292 157 aa17.26■□□□□ 0.35
HDDC3-203ENST00000494993 PRR18Q8N4B5 295 aa17.26■□□□□ 0.35
HDDC3-203ENST00000494993 OR1L1Q8NH94 360 aa17.26■□□□□ 0.35
HDDC3-203ENST00000494993 MUL1Q969V5 352 aa17.26■□□□□ 0.35
HDDC3-203ENST00000494993 DIMT1Q9UNQ2 313 aaKnown RBP17.26■□□□□ 0.35
HDDC3-203ENST00000494993 SEC14L6B5MCN3 397 aa17.25■□□□□ 0.35
HDDC3-203ENST00000494993 PSMB8P28062 276 aa17.25■□□□□ 0.35
HDDC3-203ENST00000494993 RPS11P62280 158 aaKnown RBP eCLIP17.25■□□□□ 0.35
HDDC3-203ENST00000494993 LSAMPQ13449 338 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms