RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 HAVCR2Q8TDQ0 301 aa3.97□□□□□ -1.77
PTPN4-209ENST00000469511 MRGPRDQ8TDS7 321 aa3.97□□□□□ -1.77
PTPN4-209ENST00000469511 ZNF503Q96F45 646 aa3.97□□□□□ -1.77
PTPN4-209ENST00000469511 PYURFQ96I23 114 aa3.97□□□□□ -1.77
PTPN4-209ENST00000469511 SPACA5Q96QH8 159 aa3.97□□□□□ -1.77
PTPN4-209ENST00000469511 NIPSNAP1Q9BPW8 284 aa3.97□□□□□ -1.77
PTPN4-209ENST00000469511 KCTD14Q9BQ13 255 aaPredicted RBP3.97□□□□□ -1.77
PTPN4-209ENST00000469511 OVOL2Q9BRP0 275 aa3.97□□□□□ -1.77
PTPN4-209ENST00000469511 CHCHD6Q9BRQ6 235 aa3.97□□□□□ -1.77
PTPN4-209ENST00000469511 GON7Q9BXV9 100 aa3.97□□□□□ -1.77
PTPN4-209ENST00000469511 GHITMQ9H3K2 345 aa3.97□□□□□ -1.77
PTPN4-209ENST00000469511 HMG20AQ9NP66 347 aa3.97□□□□□ -1.77
PTPN4-209ENST00000469511 PARP11Q9NR21 331 aa3.97□□□□□ -1.77
PTPN4-209ENST00000469511 SIGLEC8Q9NYZ4 499 aa3.97□□□□□ -1.77
PTPN4-209ENST00000469511 OR6C3Q9NZP0 311 aa3.97□□□□□ -1.77
PTPN4-209ENST00000469511 LAMP5Q9UJQ1 280 aa3.97□□□□□ -1.77
PTPN4-209ENST00000469511 OR52A1Q9UKL2 312 aa3.97□□□□□ -1.77
PTPN4-209ENST00000469511 RAB21Q9UL25 225 aa3.97□□□□□ -1.77
PTPN4-209ENST00000469511 STUB1Q9UNE7 303 aa3.97□□□□□ -1.77
PTPN4-209ENST00000469511 HSPG2P98160 4391 aa3.96□□□□□ -1.77
PTPN4-209ENST00000469511 UBR4Q5T4S7 5183 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 MEIKINA0A087WXM9 373 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 TRAV24A0A0B4J272 114 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 KRTAP9-6A0A140TA67 174 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 A0A1W2PN81 502 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 CCDC182A6NF36 153 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 ACOD1A6NK06 481 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 RIIAD1A6NNX1 92 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.96□□□□□ -1.78
PTPN4-209ENST00000469511 LOC110117498-PIK3R3F6TDL0 507 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 TNFRSF11BO00300 401 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 FCN1O00602 326 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 SPDEFO95238 335 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 TRBV12-3P01733 135 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 GAPDHP04406 335 aaKnown RBP3.96□□□□□ -1.78
PTPN4-209ENST00000469511 HSPB1P04792 205 aaKnown RBP3.96□□□□□ -1.78
PTPN4-209ENST00000469511 TFAP2AP05549 437 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 CSN3P07498 182 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 COX4I1P13073 169 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 ZNF44P15621 663 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 ZNF3P17036 446 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 CHRNA7P36544 502 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 MAGEA2P43356 314 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 KIR3DL2P43630 455 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 FUT6P51993 359 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 HMGA2P52926 109 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 SMIM11AP58511 58 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 LRRC36Q1X8D7 754 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 SAMD4BQ5PRF9 694 aaKnown RBP3.96□□□□□ -1.78
PTPN4-209ENST00000469511 TMEM236Q5W0B7 351 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 LGALS9CQ6DKI2 356 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 SSX6Q7RTT6 188 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 BCDIN3DQ7Z5W3 292 aaKnown RBP3.96□□□□□ -1.78
PTPN4-209ENST00000469511 KCTD20Q7Z5Y7 419 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 RDH10Q8IZV5 341 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 SPARTQ8N0X7 666 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 OR2T33Q8NG76 320 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 OR10X1Q8NGY0 326 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 RTN4IP1Q8WWV3 396 aaPredicted RBP3.96□□□□□ -1.78
PTPN4-209ENST00000469511 ADAT3Q96EY9 351 aaPredicted RBP3.96□□□□□ -1.78
PTPN4-209ENST00000469511 FAM103A1Q9BTL3 118 aaKnown RBP3.96□□□□□ -1.78
PTPN4-209ENST00000469511 ANKRD60Q9BZ19 345 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 COMMD4Q9H0A8 199 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 EXOSC4Q9NPD3 245 aaKnown RBP3.96□□□□□ -1.78
PTPN4-209ENST00000469511 PCDHB16Q9NRJ7 776 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 MRM2Q9UI43 246 aaKnown RBP3.96□□□□□ -1.78
PTPN4-209ENST00000469511 ZNF580Q9UK33 172 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 GAB2Q9UQC2 676 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 AMMECR1Q9Y4X0 333 aaPredicted RBP3.96□□□□□ -1.78
PTPN4-209ENST00000469511 A3GALT2U3KPV4 340 aa3.96□□□□□ -1.78
PTPN4-209ENST00000469511 AGRNO00468 2067 aa3.95□□□□□ -1.78
PTPN4-209ENST00000469511 NUPR2A6NF83 97 aa3.95□□□□□ -1.78
PTPN4-209ENST00000469511 M0R129 80 aa3.95□□□□□ -1.78
PTPN4-209ENST00000469511 SH2D1BO14796 132 aa3.95□□□□□ -1.78
PTPN4-209ENST00000469511 RPP14O95059 124 aaKnown RBP3.95□□□□□ -1.78
PTPN4-209ENST00000469511 CCNB2O95067 398 aa3.95□□□□□ -1.78
PTPN4-209ENST00000469511 IFNGP01579 166 aa3.95□□□□□ -1.78
PTPN4-209ENST00000469511 IL1AP01583 271 aa3.95□□□□□ -1.78
PTPN4-209ENST00000469511 CSTBP04080 98 aaKnown RBP3.95□□□□□ -1.78
PTPN4-209ENST00000469511 FABP3P05413 133 aa3.95□□□□□ -1.78
PTPN4-209ENST00000469511 CSN2P05814 226 aa3.95□□□□□ -1.78
PTPN4-209ENST00000469511 CCL1P22362 96 aa3.95□□□□□ -1.78
PTPN4-209ENST00000469511 CD1BP29016 333 aa3.95□□□□□ -1.78
PTPN4-209ENST00000469511 IFNGR2P38484 337 aa3.95□□□□□ -1.78
PTPN4-209ENST00000469511 RIDAP52758 137 aaKnown RBP3.95□□□□□ -1.78
PTPN4-209ENST00000469511 SYNJ2BPP57105 145 aa3.95□□□□□ -1.78
PTPN4-209ENST00000469511 CD81P60033 236 aa3.95□□□□□ -1.78
PTPN4-209ENST00000469511 CDC42P60953 191 aa3.95□□□□□ -1.78
PTPN4-209ENST00000469511 PSME3P61289 254 aa3.95□□□□□ -1.78
PTPN4-209ENST00000469511 BLOC1S1P78537 153 aa3.95□□□□□ -1.78
PTPN4-209ENST00000469511 BNIP1Q12981 228 aa3.95□□□□□ -1.78
PTPN4-209ENST00000469511 PDZK1IP1Q13113 114 aa3.95□□□□□ -1.78
PTPN4-209ENST00000469511 APOFQ13790 326 aa3.95□□□□□ -1.78
PTPN4-209ENST00000469511 KLF5Q13887 457 aaPredicted RBP3.95□□□□□ -1.78
PTPN4-209ENST00000469511 GINS1Q14691 196 aa3.95□□□□□ -1.78
PTPN4-209ENST00000469511 SPIN3Q5JUX0 258 aa3.95□□□□□ -1.78
PTPN4-209ENST00000469511 LCN1P1Q5VSP4 162 aa3.95□□□□□ -1.78
PTPN4-209ENST00000469511 RSBN1Q5VWQ0 802 aaPredicted RBP3.95□□□□□ -1.78
PTPN4-209ENST00000469511 RPL13AP3Q6NVV1 102 aa3.95□□□□□ -1.78
PTPN4-209ENST00000469511 ZNF575Q86XF7 245 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms