RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 ZNF665Q9H7R5 613 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 NECAP2Q9NVZ3 263 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 EHFQ9NZC4 300 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 KAAG1Q9UBP8 84 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 OPN4Q9UHM6 478 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 METRNQ9UJH8 293 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 PPIAL4AQ9Y536 164 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 MAB21L2Q9Y586 359 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 CACNA1DQ01668 2161 aa12.46□□□□□ -0.42
CCDC88C-202ENST00000334448 COL12A1Q99715 3063 aa12.46□□□□□ -0.42
CCDC88C-202ENST00000334448 TANC2Q9HCD6 1990 aa12.45□□□□□ -0.42
CCDC88C-202ENST00000334448 SPTAN1Q13813 2472 aaKnown RBP12.45□□□□□ -0.42
CCDC88C-202ENST00000334448 IGHV3OR15-7A0A075B7D8 119 aa12.45□□□□□ -0.42
CCDC88C-202ENST00000334448 FUOMA2VDF0 154 aa12.45□□□□□ -0.42
CCDC88C-202ENST00000334448 OVOL3O00110 214 aa12.45□□□□□ -0.42
CCDC88C-202ENST00000334448 NDUFA2O43678 99 aa12.45□□□□□ -0.42
CCDC88C-202ENST00000334448 IL5P05113 134 aa12.45□□□□□ -0.42
CCDC88C-202ENST00000334448 OR5H8P0DN80 308 aa12.45□□□□□ -0.42
CCDC88C-202ENST00000334448 ECI1P42126 302 aa12.45□□□□□ -0.42
CCDC88C-202ENST00000334448 BCAP31P51572 246 aa12.45□□□□□ -0.42
CCDC88C-202ENST00000334448 ATXN7L3Q14CW9 347 aaPredicted RBP12.45□□□□□ -0.42
CCDC88C-202ENST00000334448 HMGN3Q15651 99 aa12.45□□□□□ -0.42
CCDC88C-202ENST00000334448 KCNJ8Q15842 424 aa12.45□□□□□ -0.42
CCDC88C-202ENST00000334448 TATDN3Q17R31 274 aa12.45□□□□□ -0.42
CCDC88C-202ENST00000334448 HFEQ30201 348 aa12.45□□□□□ -0.42
CCDC88C-202ENST00000334448 FAM201AQ5SY85 155 aa12.45□□□□□ -0.42
CCDC88C-202ENST00000334448 TRAT1Q6PIZ9 186 aa12.45□□□□□ -0.42
CCDC88C-202ENST00000334448 PEG10Q86TG7 708 aaKnown RBP12.45□□□□□ -0.42
CCDC88C-202ENST00000334448 BOLLQ8N9W6 283 aaKnown RBP12.45□□□□□ -0.42
CCDC88C-202ENST00000334448 OR5D13Q8NGL4 314 aa12.45□□□□□ -0.42
CCDC88C-202ENST00000334448 PLEKHF2Q9H8W4 249 aa12.45□□□□□ -0.42
CCDC88C-202ENST00000334448 NKX6-3A6NJ46 265 aa12.44□□□□□ -0.42
CCDC88C-202ENST00000334448 CLDN1O95832 211 aa12.44□□□□□ -0.42
CCDC88C-202ENST00000334448 DHFRP00374 187 aa12.44□□□□□ -0.42
CCDC88C-202ENST00000334448 TK1P04183 234 aa12.44□□□□□ -0.42
CCDC88C-202ENST00000334448 TRAPPC2P0DI81 140 aa12.44□□□□□ -0.42
CCDC88C-202ENST00000334448 TRAPPC2BP0DI82 140 aa12.44□□□□□ -0.42
CCDC88C-202ENST00000334448 P2RX3P56373 397 aa12.44□□□□□ -0.42
CCDC88C-202ENST00000334448 SEC61A1P61619 476 aaKnown RBP12.44□□□□□ -0.42
CCDC88C-202ENST00000334448 IL13RA1P78552 427 aa12.44□□□□□ -0.42
CCDC88C-202ENST00000334448 AADACL3Q5VUY0 350 aa12.44□□□□□ -0.42
CCDC88C-202ENST00000334448 CADM3Q8N126 398 aa12.44□□□□□ -0.42
CCDC88C-202ENST00000334448 ASCC1Q8N9N2 400 aaKnown RBP12.44□□□□□ -0.42
CCDC88C-202ENST00000334448 OR5T2Q8NGG2 359 aa12.44□□□□□ -0.42
CCDC88C-202ENST00000334448 GIMAP1Q8WWP7 306 aa12.44□□□□□ -0.42
CCDC88C-202ENST00000334448 CCL17Q92583 94 aa12.44□□□□□ -0.42
CCDC88C-202ENST00000334448 VRK1Q99986 396 aaPredicted RBP12.44□□□□□ -0.42
CCDC88C-202ENST00000334448 UBTD1Q9HAC8 227 aa12.44□□□□□ -0.42
CCDC88C-202ENST00000334448 PCDHB10Q9UN67 800 aa12.44□□□□□ -0.42
CCDC88C-202ENST00000334448 TRAV6A0A075B6T7 132 aa12.43□□□□□ -0.42
CCDC88C-202ENST00000334448 PYCARD-AS1I3L0S3 204 aa12.43□□□□□ -0.42
CCDC88C-202ENST00000334448 J3QKU1 62 aa12.43□□□□□ -0.42
CCDC88C-202ENST00000334448 TUSC2O75896 110 aa12.43□□□□□ -0.42
CCDC88C-202ENST00000334448 GSTT2P0CG29 244 aa12.43□□□□□ -0.42
CCDC88C-202ENST00000334448 RCC1P18754 421 aaPredicted RBP12.43□□□□□ -0.42
CCDC88C-202ENST00000334448 FPR2P25090 351 aa12.43□□□□□ -0.42
CCDC88C-202ENST00000334448 GABRA2P47869 451 aa12.43□□□□□ -0.42
CCDC88C-202ENST00000334448 HERPUD1Q15011 391 aa12.43□□□□□ -0.42
CCDC88C-202ENST00000334448 C6orf183Q5T699 404 aa12.43□□□□□ -0.42
CCDC88C-202ENST00000334448 FAHD2BQ6P2I3 314 aaPredicted RBP12.43□□□□□ -0.42
CCDC88C-202ENST00000334448 OR6F1Q8NGZ6 308 aa12.43□□□□□ -0.42
CCDC88C-202ENST00000334448 FAHD2AQ96GK7 314 aa12.43□□□□□ -0.42
CCDC88C-202ENST00000334448 LURAP1Q96LR2 239 aa12.43□□□□□ -0.42
CCDC88C-202ENST00000334448 SCGB3A2Q96PL1 93 aa12.43□□□□□ -0.42
CCDC88C-202ENST00000334448 TOLLIPQ9H0E2 274 aa12.43□□□□□ -0.42
CCDC88C-202ENST00000334448 GHITMQ9H3K2 345 aa12.43□□□□□ -0.42
CCDC88C-202ENST00000334448 KIF25Q9UIL4 384 aa12.43□□□□□ -0.42
CCDC88C-202ENST00000334448 LAMP3Q9UQV4 416 aa12.43□□□□□ -0.42
CCDC88C-202ENST00000334448 hCG_2014768A0A024R1R8 64 aa12.42□□□□□ -0.42
CCDC88C-202ENST00000334448 TRBV6-7A0A0A0MS04 114 aa12.42□□□□□ -0.42
CCDC88C-202ENST00000334448 IGKV1-6A0A0C4DH72 117 aa12.42□□□□□ -0.42
CCDC88C-202ENST00000334448 ODAMA1E959 279 aa12.42□□□□□ -0.42
CCDC88C-202ENST00000334448 ARPC1BO15143 372 aaKnown RBP12.42□□□□□ -0.42
CCDC88C-202ENST00000334448 IGHV2-70P01814 119 aa12.42□□□□□ -0.42
CCDC88C-202ENST00000334448 TFF1P04155 84 aa12.42□□□□□ -0.42
CCDC88C-202ENST00000334448 RBMXP38159 391 aaKnown RBP12.42□□□□□ -0.42
CCDC88C-202ENST00000334448 GLP1RP43220 463 aa12.42□□□□□ -0.42
CCDC88C-202ENST00000334448 UCP3P55916 312 aa12.42□□□□□ -0.42
CCDC88C-202ENST00000334448 UBE2MP61081 183 aaKnown RBP12.42□□□□□ -0.42
CCDC88C-202ENST00000334448 TSPAN5P62079 268 aa12.42□□□□□ -0.42
CCDC88C-202ENST00000334448 AESQ08117 197 aa12.42□□□□□ -0.42
CCDC88C-202ENST00000334448 SCGB2B2Q4G0G5 96 aa12.42□□□□□ -0.42
CCDC88C-202ENST00000334448 KRBOX4Q5JUW0 171 aa12.42□□□□□ -0.42
CCDC88C-202ENST00000334448 SLC36A1Q7Z2H8 476 aa12.42□□□□□ -0.42
CCDC88C-202ENST00000334448 MOB3AQ96BX8 217 aa12.42□□□□□ -0.42
CCDC88C-202ENST00000334448 CLEC4MQ9H2X3 399 aaPredicted RBP12.42□□□□□ -0.42
CCDC88C-202ENST00000334448 TRAPPC2LQ9UL33 140 aa12.42□□□□□ -0.42
CCDC88C-202ENST00000334448 GPR132Q9UNW8 380 aa12.42□□□□□ -0.42
CCDC88C-202ENST00000334448 FLVCR2Q9UPI3 526 aa12.42□□□□□ -0.42
CCDC88C-202ENST00000334448 ALG5Q9Y673 324 aa12.42□□□□□ -0.42
CCDC88C-202ENST00000334448 DYSFO75923 2080 aa12.41□□□□□ -0.42
CCDC88C-202ENST00000334448 MEIKINA0A087WXM9 373 aa12.41□□□□□ -0.42
CCDC88C-202ENST00000334448 SNRPGP15A8MWD9 76 aa12.41□□□□□ -0.42
CCDC88C-202ENST00000334448 SDCBPO00560 298 aaPredicted RBP12.41□□□□□ -0.42
CCDC88C-202ENST00000334448 GYPAP02724 150 aa12.41□□□□□ -0.42
CCDC88C-202ENST00000334448 SCTP09683 121 aa12.41□□□□□ -0.42
CCDC88C-202ENST00000334448 COX6B1P14854 86 aa12.41□□□□□ -0.42
CCDC88C-202ENST00000334448 COL8A2P25067 703 aa12.41□□□□□ -0.42
CCDC88C-202ENST00000334448 EFNA4P52798 201 aa12.41□□□□□ -0.42
CCDC88C-202ENST00000334448 TMEM155Q4W5P6 130 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms