RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 ST3GAL6Q9Y274 331 aa10.3□□□□□ -0.76
CLSTN3-208ENST00000538933 PEX16Q9Y5Y5 336 aa10.3□□□□□ -0.76
CLSTN3-208ENST00000538933 TRAV38-1A0A0B4J264 116 aa10.29□□□□□ -0.76
CLSTN3-208ENST00000538933 A0A1W2PP11 408 aa10.29□□□□□ -0.76
CLSTN3-208ENST00000538933 TMEM14DPA8MWL7 114 aa10.29□□□□□ -0.76
CLSTN3-208ENST00000538933 F5H0A9 414 aaPredicted RBP10.29□□□□□ -0.76
CLSTN3-208ENST00000538933 HPGDSO60760 199 aa10.29□□□□□ -0.76
CLSTN3-208ENST00000538933 NOS1APO75052 506 aaPredicted RBP10.29□□□□□ -0.76
CLSTN3-208ENST00000538933 SCGNO76038 276 aa10.29□□□□□ -0.76
CLSTN3-208ENST00000538933 CRYBA1P05813 215 aa10.29□□□□□ -0.76
CLSTN3-208ENST00000538933 ACAA1P09110 424 aaPredicted RBP10.29□□□□□ -0.76
CLSTN3-208ENST00000538933 RAB6AP20340 208 aa10.29□□□□□ -0.76
CLSTN3-208ENST00000538933 CFHR2P36980 270 aa10.29□□□□□ -0.76
CLSTN3-208ENST00000538933 PMELP40967 661 aa10.29□□□□□ -0.76
CLSTN3-208ENST00000538933 GABRA2P47869 451 aa10.29□□□□□ -0.76
CLSTN3-208ENST00000538933 LOXL3P58215 753 aa10.29□□□□□ -0.76
CLSTN3-208ENST00000538933 SCN1BQ07699 218 aa10.29□□□□□ -0.76
CLSTN3-208ENST00000538933 IKZF1Q13422 519 aa10.29□□□□□ -0.76
CLSTN3-208ENST00000538933 KCNJ8Q15842 424 aa10.29□□□□□ -0.76
CLSTN3-208ENST00000538933 MICBQ29980 383 aa10.29□□□□□ -0.76
CLSTN3-208ENST00000538933 SFRP4Q6FHJ7 346 aaPredicted RBP10.29□□□□□ -0.76
CLSTN3-208ENST00000538933 ELP2Q6IA86 826 aa10.29□□□□□ -0.76
CLSTN3-208ENST00000538933 Q6YL49 198 aa10.29□□□□□ -0.76
CLSTN3-208ENST00000538933 ACP7Q6ZNF0 438 aa10.29□□□□□ -0.76
CLSTN3-208ENST00000538933 GCSAMQ8N6F7 178 aa10.29□□□□□ -0.76
CLSTN3-208ENST00000538933 S100A16Q96FQ6 103 aaKnown RBP10.29□□□□□ -0.76
CLSTN3-208ENST00000538933 NRIP2Q9BQI9 281 aa10.29□□□□□ -0.76
CLSTN3-208ENST00000538933 HMG20AQ9NP66 347 aa10.29□□□□□ -0.76
CLSTN3-208ENST00000538933 DIABLOQ9NR28 239 aa10.29□□□□□ -0.76
CLSTN3-208ENST00000538933 TNFRSF19Q9NS68 423 aa10.29□□□□□ -0.76
CLSTN3-208ENST00000538933 NLKQ9UBE8 527 aa10.29□□□□□ -0.76
CLSTN3-208ENST00000538933 A3GALT2U3KPV4 340 aa10.29□□□□□ -0.76
CLSTN3-208ENST00000538933 IGHV3OR15-7A0A075B7D8 119 aa10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 OOEPA6NGQ2 149 aa10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 NKX6-3A6NJ46 265 aa10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 TMEM178BH3BS89 294 aa10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 H3BUI4 141 aa10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 LGALS8O00214 317 aa10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 SH2D1BO14796 132 aa10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 OR7C1O76099 320 aaPredicted RBP10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 ZNF205O95201 554 aa10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 ZNF44P15621 663 aa10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 PITPNBP48739 271 aa10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 VEGFCP49767 419 aa10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 RBM11P57052 281 aaKnown RBP10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 RPS27AP62979 156 aaKnown RBP10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 UNC119Q13432 240 aa10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 PDCD1Q15116 288 aa10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 PIGYQ3MUY2 71 aa10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 SPIN3Q5JUX0 258 aa10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 NKAPLQ5M9Q1 402 aa10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 FAM201AQ5SY85 155 aa10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 ATAD3CQ5T2N8 411 aa10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 LINC00596Q86U02 117 aa10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 LRRC28Q86X40 367 aaPredicted RBP10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 CHST4Q8NCG5 386 aa10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 TMEM104Q8NE00 496 aa10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 C19orf18Q8NEA5 215 aa10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 OR56B1Q8NGI3 324 aa10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 MRAPQ8TCY5 172 aa10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 RAB40AQ8WXH6 277 aa10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 PTX4Q96A99 478 aa10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 DIRAS2Q96HU8 199 aa10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 CMTM3Q96MX0 182 aa10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 NEDD4LQ96PU5 975 aa10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 WDR13Q9H1Z4 485 aa10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 FBLN5Q9UBX5 448 aa10.28□□□□□ -0.76
CLSTN3-208ENST00000538933 OR2AT4A6NND4 320 aa10.27□□□□□ -0.77
CLSTN3-208ENST00000538933 F8VVB4 439 aa10.27□□□□□ -0.77
CLSTN3-208ENST00000538933 F8VWA3 439 aa10.27□□□□□ -0.77
CLSTN3-208ENST00000538933 CTDSP2O14595 271 aa10.27□□□□□ -0.77
CLSTN3-208ENST00000538933 DEGS1O15121 323 aa10.27□□□□□ -0.77
CLSTN3-208ENST00000538933 HAND1O96004 215 aa10.27□□□□□ -0.77
CLSTN3-208ENST00000538933 APOA1P02647 267 aa10.27□□□□□ -0.77
CLSTN3-208ENST00000538933 EIF4EP06730 217 aaKnown RBP10.27□□□□□ -0.77
CLSTN3-208ENST00000538933 MUC1P15941 1255 aaPredicted RBP10.27□□□□□ -0.77
CLSTN3-208ENST00000538933 DUSP1P28562 367 aa10.27□□□□□ -0.77
CLSTN3-208ENST00000538933 ERVK11-1P61568 191 aa10.27□□□□□ -0.77
CLSTN3-208ENST00000538933 BTG1P62324 171 aa10.27□□□□□ -0.77
CLSTN3-208ENST00000538933 IL13RA2Q14627 380 aa10.27□□□□□ -0.77
CLSTN3-208ENST00000538933 MPV17LQ2QL34 196 aa10.27□□□□□ -0.77
CLSTN3-208ENST00000538933 BRD3OSQ6XYD6 125 aa10.27□□□□□ -0.77
CLSTN3-208ENST00000538933 FAM90A1Q86YD7 464 aa10.27□□□□□ -0.77
CLSTN3-208ENST00000538933 TMEM86BQ8N661 226 aa10.27□□□□□ -0.77
CLSTN3-208ENST00000538933 OR5T2Q8NGG2 359 aa10.27□□□□□ -0.77
CLSTN3-208ENST00000538933 NEK7Q8TDX7 302 aa10.27□□□□□ -0.77
CLSTN3-208ENST00000538933 Q96M66 194 aa10.27□□□□□ -0.77
CLSTN3-208ENST00000538933 NXF2Q9GZY0 626 aaKnown RBP10.27□□□□□ -0.77
CLSTN3-208ENST00000538933 LPAR5Q9H1C0 372 aa10.27□□□□□ -0.77
CLSTN3-208ENST00000538933 SACSQ9NZJ4 4579 aa10.27□□□□□ -0.77
CLSTN3-208ENST00000538933 TRAV40A0A0B4J280 105 aa10.26□□□□□ -0.77
CLSTN3-208ENST00000538933 RFPL4AA6NLU0 287 aa10.26□□□□□ -0.77
CLSTN3-208ENST00000538933 RFPL4AL1F8VTS6 287 aa10.26□□□□□ -0.77
CLSTN3-208ENST00000538933 SIRPB1O00241 398 aa10.26□□□□□ -0.77
CLSTN3-208ENST00000538933 GEMIN2O14893 280 aaKnown RBP10.26□□□□□ -0.77
CLSTN3-208ENST00000538933 LDLRAD4O15165 306 aa10.26□□□□□ -0.77
CLSTN3-208ENST00000538933 LHBP01229 141 aa10.26□□□□□ -0.77
CLSTN3-208ENST00000538933 GYPAP02724 150 aa10.26□□□□□ -0.77
CLSTN3-208ENST00000538933 OPN1MWP04001 364 aa10.26□□□□□ -0.77
CLSTN3-208ENST00000538933 CHRM2P08172 466 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms