RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeastyeast

Gene RPN11, Length 921 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPN11YFR004W HDA3Q06623 655 aa6.44□□□□□ -1.38
RPN11YFR004W YDL057WQ07379 328 aa6.44□□□□□ -1.38
RPN11YFR004W MRN1Q08925 612 aaKnown RBP RIP-Chip data6.44□□□□□ -1.38not detected
RPN11YFR004W RRD2Q12461 358 aa6.44□□□□□ -1.38
RPN11YFR004W RAD1P06777 1100 aa6.43□□□□□ -1.38
RPN11YFR004W CUP1-1P0CX80 61 aa6.43□□□□□ -1.38
RPN11YFR004W CUP1-2P0CX81 61 aa6.43□□□□□ -1.38
RPN11YFR004W APL1P27351 700 aa6.43□□□□□ -1.38
RPN11YFR004W TRK2P28584 889 aa6.43□□□□□ -1.38
RPN11YFR004W YBR197CP38306 217 aa6.43□□□□□ -1.38
RPN11YFR004W EAF5P39995 279 aa6.43□□□□□ -1.38
RPN11YFR004W YIR016WP40572 265 aa6.43□□□□□ -1.38
RPN11YFR004W BRE2P43132 505 aa6.43□□□□□ -1.38
RPN11YFR004W ROG3P43602 733 aa6.43□□□□□ -1.38
RPN11YFR004W CTK3P46963 296 aaPredicted RBP6.43□□□□□ -1.38
RPN11YFR004W YGL140CP53120 1219 aa6.43□□□□□ -1.38
RPN11YFR004W CWC22P53333 577 aaKnown RBP6.43□□□□□ -1.38
RPN11YFR004W VPS16Q03308 798 aa6.43□□□□□ -1.38
RPN11YFR004W DOT1Q04089 582 aaKnown RBP6.43□□□□□ -1.38
RPN11YFR004W YLR257WQ06146 321 aaKnown RBP6.43□□□□□ -1.38
RPN11YFR004W SFH1Q06168 426 aa6.43□□□□□ -1.38
RPN11YFR004W OMS1Q06668 471 aa6.43□□□□□ -1.38
RPN11YFR004W YPR078CQ06813 372 aa6.43□□□□□ -1.38
RPN11YFR004W SIL1Q08199 421 aa6.43□□□□□ -1.38
RPN11YFR004W SMC5Q08204 1093 aa6.43□□□□□ -1.38
RPN11YFR004W PLP2Q12017 286 aa6.43□□□□□ -1.38
RPN11YFR004W RMP1Q12530 201 aa6.43□□□□□ -1.38
RPN11YFR004W RPL40AP0CH08 128 aaKnown RBP6.42□□□□□ -1.38
RPN11YFR004W RPL40BP0CH09 128 aaKnown RBP6.42□□□□□ -1.38
RPN11YFR004W TMT1P32643 299 aa6.42□□□□□ -1.38
RPN11YFR004W GCS1P35197 352 aa6.42□□□□□ -1.38
RPN11YFR004W CCL1P37366 393 aa6.42□□□□□ -1.38
RPN11YFR004W FIS1P40515 155 aa6.42□□□□□ -1.38
RPN11YFR004W MAF1P41910 395 aa6.42□□□□□ -1.38
RPN11YFR004W YGR130CP53278 816 aa6.42□□□□□ -1.38
RPN11YFR004W DIP5P53388 608 aa6.42□□□□□ -1.38
RPN11YFR004W ROD1Q02805 837 aa6.42□□□□□ -1.38
RPN11YFR004W URH1Q04179 340 aa6.42□□□□□ -1.38
RPN11YFR004W SPR28Q04921 423 aa6.42□□□□□ -1.38
RPN11YFR004W MRI1Q06489 411 aaKnown RBP6.42□□□□□ -1.38
RPN11YFR004W TCO89Q08921 799 aa6.42□□□□□ -1.38
RPN11YFR004W PIN2Q12057 282 aa6.42□□□□□ -1.38
RPN11YFR004W YOR022CQ12204 715 aa6.42□□□□□ -1.38
RPN11YFR004W RUD3Q12234 484 aaKnown RBP6.42□□□□□ -1.38
RPN11YFR004W CIT2P08679 460 aa6.41□□□□□ -1.38
RPN11YFR004W PEX1P24004 1043 aa6.41□□□□□ -1.38
RPN11YFR004W HXT1P32465 570 aa6.41□□□□□ -1.38
RPN11YFR004W CSE2P33308 149 aa6.41□□□□□ -1.38
RPN11YFR004W CNS1P33313 385 aa6.41□□□□□ -1.38
RPN11YFR004W YEL1P34225 687 aa6.41□□□□□ -1.38
RPN11YFR004W MUD2P36084 527 aaKnown RBP6.41□□□□□ -1.38
RPN11YFR004W YKL023WP36103 277 aaKnown RBP6.41□□□□□ -1.38
RPN11YFR004W LAM5P43560 674 aa6.41□□□□□ -1.38
RPN11YFR004W TOF1P53840 1238 aa6.41□□□□□ -1.38
RPN11YFR004W DIG1Q03063 452 aaKnown RBP6.41□□□□□ -1.38
RPN11YFR004W NUR1Q12066 484 aa6.41□□□□□ -1.38
RPN11YFR004W DAS2Q12084 232 aa6.41□□□□□ -1.38
RPN11YFR004W CDC8P00572 216 aa6.4□□□□□ -1.38
RPN11YFR004W CYT1P07143 309 aa6.4□□□□□ -1.38
RPN11YFR004W CLN3P13365 580 aa6.4□□□□□ -1.38
RPN11YFR004W GLN3P18494 730 aa6.4□□□□□ -1.38
RPN11YFR004W PRP22P24384 1145 aaKnown RBP6.4□□□□□ -1.38
RPN11YFR004W NFU1P32860 256 aa6.4□□□□□ -1.38
RPN11YFR004W NUP82P40368 713 aa6.4□□□□□ -1.38
RPN11YFR004W MAD1P40957 749 aa6.4□□□□□ -1.38
RPN11YFR004W RNT1Q02555 471 aa6.4□□□□□ -1.38
RPN11YFR004W YMR102CQ03177 834 aa6.4□□□□□ -1.38
RPN11YFR004W GIR2Q03768 265 aaPredicted RBP6.4□□□□□ -1.38
RPN11YFR004W UTP14Q04500 899 aaKnown RBP6.4□□□□□ -1.38
RPN11YFR004W POB3Q04636 552 aaKnown RBP6.4□□□□□ -1.38
RPN11YFR004W NOP6Q07623 225 aaKnown RBP6.4□□□□□ -1.38
RPN11YFR004W YPL277CQ08989 487 aa6.4□□□□□ -1.38
RPN11YFR004W YOR223WQ12015 292 aa6.4□□□□□ -1.38
RPN11YFR004W MED1Q12321 566 aa6.4□□□□□ -1.38
RPN11YFR004W MOD5P07884 428 aa6.39□□□□□ -1.39
RPN11YFR004W ERG11P10614 530 aa6.39□□□□□ -1.39
RPN11YFR004W RPB10P22139 70 aa6.39□□□□□ -1.39
RPN11YFR004W HCM1P25364 564 aa6.39□□□□□ -1.39
RPN11YFR004W ISC10P32645 267 aa6.39□□□□□ -1.39
RPN11YFR004W RPT1P33299 467 aaKnown RBP6.39□□□□□ -1.39
RPN11YFR004W ATG36P46983 293 aa6.39□□□□□ -1.39
RPN11YFR004W VTI1Q04338 217 aa6.39□□□□□ -1.39
RPN11YFR004W MFB1Q04922 465 aa6.39□□□□□ -1.39
RPN11YFR004W FUS2Q05670 677 aa6.39□□□□□ -1.39
RPN11YFR004W MLH2Q07980 695 aa6.39□□□□□ -1.39
RPN11YFR004W FAL1Q12099 399 aaKnown RBP6.39□□□□□ -1.39
RPN11YFR004W PKH2Q12236 1081 aaKnown RBP6.39□□□□□ -1.39
RPN11YFR004W TRP2P00899 507 aaKnown RBP6.38□□□□□ -1.39
RPN11YFR004W COX4P04037 155 aa6.38□□□□□ -1.39
RPN11YFR004W ADE4P04046 510 aaKnown RBP6.38□□□□□ -1.39
RPN11YFR004W SRD1P09007 221 aa6.38□□□□□ -1.39
RPN11YFR004W HMG2P12684 1045 aa6.38□□□□□ -1.39
RPN11YFR004W RSA4P25382 515 aaKnown RBP6.38□□□□□ -1.39
RPN11YFR004W RAD27P26793 382 aa6.38□□□□□ -1.39
RPN11YFR004W DPH2P32461 534 aa6.38□□□□□ -1.39
RPN11YFR004W LSB6P42951 607 aa6.38□□□□□ -1.39
RPN11YFR004W YJR079WP47126 109 aa6.38□□□□□ -1.39
RPN11YFR004W KAP114P53067 1004 aa6.38□□□□□ -1.39
RPN11YFR004W BTN2P53286 410 aa6.38□□□□□ -1.39
RPN11YFR004W SEC5P89102 971 aa6.38□□□□□ -1.39
Retrieved 100 of 5,963 RNA–protein pairs in 13.7 ms