RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 SH2B1Q9NRF2 756 aaPredicted RBP18.54■□□□□ 0.56
CPSF1-213ENST00000620219 NCOA7Q8NI08 942 aa18.54■□□□□ 0.56
CPSF1-213ENST00000620219 PDCP20941 246 aa18.53■□□□□ 0.56
CPSF1-213ENST00000620219 HMGB2P26583 209 aaKnown RBP18.53■□□□□ 0.56
CPSF1-213ENST00000620219 TRIM29Q14134 588 aa18.53■□□□□ 0.56
CPSF1-213ENST00000620219 MAP4K1Q92918 833 aa18.53■□□□□ 0.56
CPSF1-213ENST00000620219 MAGEB6P1A0A0J9YX57 407 aa18.53■□□□□ 0.56
CPSF1-213ENST00000620219 SAMD1Q6SPF0 538 aaPredicted RBP18.53■□□□□ 0.56
CPSF1-213ENST00000620219 ZKSCAN3Q9BRR0 538 aa18.53■□□□□ 0.56
CPSF1-213ENST00000620219 M0R2C6 588 aa18.53■□□□□ 0.56
CPSF1-213ENST00000620219 HMGB1P09429 215 aaKnown RBP18.53■□□□□ 0.56
CPSF1-213ENST00000620219 ATP2B2Q01814 1243 aa18.53■□□□□ 0.56
CPSF1-213ENST00000620219 EN1Q05925 392 aaPredicted RBP18.53■□□□□ 0.56
CPSF1-213ENST00000620219 PIH1D3Q9NQM4 214 aaKnown RBP18.53■□□□□ 0.56
CPSF1-213ENST00000620219 MAST3O60307 1309 aa18.53■□□□□ 0.56
CPSF1-213ENST00000620219 MFSD6Q6ZSS7 791 aa18.52■□□□□ 0.56
CPSF1-213ENST00000620219 PLA2G12BQ9BX93 195 aa18.52■□□□□ 0.56
CPSF1-213ENST00000620219 TRIM34Q9BYJ4 488 aa18.52■□□□□ 0.56
CPSF1-213ENST00000620219 POLR3DP05423 398 aaPredicted RBP18.52■□□□□ 0.56
CPSF1-213ENST00000620219 L1TD1Q5T7N2 865 aaKnown RBP18.52■□□□□ 0.56
CPSF1-213ENST00000620219 TAF6LQ9Y6J9 622 aa18.52■□□□□ 0.56
CPSF1-213ENST00000620219 KLF18A0A0U1RQI7 1052 aa18.52■□□□□ 0.55
CPSF1-213ENST00000620219 MMP10P09238 476 aa18.52■□□□□ 0.55
CPSF1-213ENST00000620219 ZNF804AQ7Z570 1209 aa18.52■□□□□ 0.55
CPSF1-213ENST00000620219 ZSCAN29Q8IWY8 852 aaPredicted RBP18.52■□□□□ 0.55
CPSF1-213ENST00000620219 MINPP1Q9UNW1 487 aa18.52■□□□□ 0.55
CPSF1-213ENST00000620219 PRC1O43663 620 aa18.51■□□□□ 0.55
CPSF1-213ENST00000620219 SKOR2Q2VWA4 1001 aaPredicted RBP18.51■□□□□ 0.55
CPSF1-213ENST00000620219 C3orf67Q6ZVT6 689 aa18.51■□□□□ 0.55
CPSF1-213ENST00000620219 BICD2Q8TD16 824 aa18.51■□□□□ 0.55
CPSF1-213ENST00000620219 AATFQ9NY61 560 aaKnown RBP eCLIP18.51■□□□□ 0.554e-12■■■■■ 31.9
CPSF1-213ENST00000620219 DENND2AQ9ULE3 1009 aa18.51■□□□□ 0.55
CPSF1-213ENST00000620219 KDM3BQ7LBC6 1761 aa18.51■□□□□ 0.55
CPSF1-213ENST00000620219 CYP2E1P05181 493 aaPredicted RBP18.51■□□□□ 0.55
CPSF1-213ENST00000620219 SLC3A2P08195 630 aaKnown RBP18.51■□□□□ 0.55
CPSF1-213ENST00000620219 CYP21A2P08686 494 aa18.51■□□□□ 0.55
CPSF1-213ENST00000620219 MCM5P33992 734 aa18.51■□□□□ 0.55
CPSF1-213ENST00000620219 GGA1Q9UJY5 639 aa18.51■□□□□ 0.55
CPSF1-213ENST00000620219 PRDM1O75626 825 aa18.51■□□□□ 0.55
CPSF1-213ENST00000620219 TMEM67Q5HYA8 995 aa18.51■□□□□ 0.55
CPSF1-213ENST00000620219 ZMYM1Q5SVZ6 1142 aa18.51■□□□□ 0.55
CPSF1-213ENST00000620219 RBM27Q9P2N5 1060 aaKnown RBP18.51■□□□□ 0.55
CPSF1-213ENST00000620219 B4E1Z4 1266 aa18.51■□□□□ 0.55
CPSF1-213ENST00000620219 FGAP02671 866 aa18.51■□□□□ 0.55
CPSF1-213ENST00000620219 RPS6KB1P23443 525 aa18.51■□□□□ 0.55
CPSF1-213ENST00000620219 SDR42E1Q8WUS8 393 aa18.51■□□□□ 0.55
CPSF1-213ENST00000620219 ZNF804BA4D1E1 1349 aa18.5■□□□□ 0.55
CPSF1-213ENST00000620219 LARGE1O95461 756 aa18.5■□□□□ 0.55
CPSF1-213ENST00000620219 STX6O43752 255 aa18.5■□□□□ 0.55
CPSF1-213ENST00000620219 CTDSPL2Q05D32 466 aa18.5■□□□□ 0.55
CPSF1-213ENST00000620219 RC3H1Q5TC82 1133 aaKnown RBP18.5■□□□□ 0.55
CPSF1-213ENST00000620219 DHX32Q7L7V1 743 aaKnown RBP18.5■□□□□ 0.55
CPSF1-213ENST00000620219 NLGN1Q8N2Q7 840 aa18.5■□□□□ 0.55
CPSF1-213ENST00000620219 NCOA5Q9HCD5 579 aaKnown RBP18.5■□□□□ 0.55
CPSF1-213ENST00000620219 MKNK2Q9HBH9 465 aa18.5■□□□□ 0.55
CPSF1-213ENST00000620219 COL14A1Q05707 1796 aaKnown RBP18.5■□□□□ 0.55
CPSF1-213ENST00000620219 LDHBP07195 334 aaKnown RBP18.49■□□□□ 0.55
CPSF1-213ENST00000620219 CSPP1Q1MSJ5 1256 aa18.49■□□□□ 0.55
CPSF1-213ENST00000620219 SYAP1Q96A49 352 aaPredicted RBP18.49■□□□□ 0.55
CPSF1-213ENST00000620219 TRIM44Q96DX7 344 aaPredicted RBP18.49■□□□□ 0.55
CPSF1-213ENST00000620219 LRRC4BQ9NT99 713 aa18.49■□□□□ 0.55
CPSF1-213ENST00000620219 TFIP11Q9UBB9 837 aaKnown RBP18.49■□□□□ 0.55
CPSF1-213ENST00000620219 RNF214Q8ND24 703 aa18.49■□□□□ 0.55
CPSF1-213ENST00000620219 CNTNAP4Q9C0A0 1308 aa18.49■□□□□ 0.55
CPSF1-213ENST00000620219 IL27Q8NEV9 243 aa18.49■□□□□ 0.55
CPSF1-213ENST00000620219 BSDC1Q9NW68 430 aaPredicted RBP18.49■□□□□ 0.55
CPSF1-213ENST00000620219 MRC1P22897 1456 aa18.48■□□□□ 0.55
CPSF1-213ENST00000620219 BCL9LQ86UU0 1499 aa18.48■□□□□ 0.55
CPSF1-213ENST00000620219 PLEKHG2Q9H7P9 1386 aa18.48■□□□□ 0.55
CPSF1-213ENST00000620219 AK9Q5TCS8 1911 aa18.48■□□□□ 0.55
CPSF1-213ENST00000620219 E7EWF7 191 aa18.48■□□□□ 0.55
CPSF1-213ENST00000620219 UBE4AQ14139 1066 aa18.48■□□□□ 0.55
CPSF1-213ENST00000620219 USP54Q70EL1 1684 aa18.48■□□□□ 0.55
CPSF1-213ENST00000620219 DISP2A7MBM2 1401 aa18.47■□□□□ 0.55
CPSF1-213ENST00000620219 WTIPA6NIX2 430 aaPredicted RBP18.47■□□□□ 0.55
CPSF1-213ENST00000620219 PRKAB2O43741 272 aa18.47■□□□□ 0.55
CPSF1-213ENST00000620219 BAG6P46379 1132 aa18.47■□□□□ 0.55
CPSF1-213ENST00000620219 PICALMQ13492 652 aa18.47■□□□□ 0.55
CPSF1-213ENST00000620219 SPTY2D1Q68D10 685 aaPredicted RBP18.47■□□□□ 0.55
CPSF1-213ENST00000620219 CRNKL1Q9BZJ0 848 aaKnown RBP18.47■□□□□ 0.55
CPSF1-213ENST00000620219 MCM9Q9NXL9 1143 aa18.47■□□□□ 0.55
CPSF1-213ENST00000620219 SLC12A7Q9Y666 1083 aa18.47■□□□□ 0.55
CPSF1-213ENST00000620219 VIRMAQ69YN4 1812 aaKnown RBP18.47■□□□□ 0.55
CPSF1-213ENST00000620219 ME3Q16798 604 aa18.47■□□□□ 0.55
CPSF1-213ENST00000620219 PTMAP06454 111 aaKnown RBP18.47■□□□□ 0.55
CPSF1-213ENST00000620219 NECTIN1Q15223 517 aa18.47■□□□□ 0.55
CPSF1-213ENST00000620219 DOK7Q18PE1 504 aa18.47■□□□□ 0.55
CPSF1-213ENST00000620219 FAM173BQ6P4H8 233 aa18.47■□□□□ 0.55
CPSF1-213ENST00000620219 PARP4Q9UKK3 1724 aaKnown RBP18.46■□□□□ 0.55
CPSF1-213ENST00000620219 USP42Q9H9J4 1324 aaKnown RBP18.46■□□□□ 0.55
CPSF1-213ENST00000620219 SCN11AQ9UI33 1791 aa18.46■□□□□ 0.55
CPSF1-213ENST00000620219 SLC27A3Q5K4L6 730 aa18.46■□□□□ 0.55
CPSF1-213ENST00000620219 DPP8Q6V1X1 898 aaPredicted RBP18.46■□□□□ 0.55
CPSF1-213ENST00000620219 BAG3O95817 575 aa18.45■□□□□ 0.54
CPSF1-213ENST00000620219 PRR5LQ6MZQ0 368 aa18.45■□□□□ 0.54
CPSF1-213ENST00000620219 DSCC1Q9BVC3 393 aa18.45■□□□□ 0.54
CPSF1-213ENST00000620219 TPCN1Q9ULQ1 816 aa18.45■□□□□ 0.54
CPSF1-213ENST00000620219 XIRP1Q702N8 1843 aaKnown RBP18.45■□□□□ 0.54
CPSF1-213ENST00000620219 COL18A1P39060 1754 aa18.45■□□□□ 0.54
CPSF1-213ENST00000620219 LTBP4Q8N2S1 1624 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms