RNA–Protein interactions for RNA: ENST00000602574.5

COMMD3-215, Transcript of COMM domain containing 3, humanhuman

TSL 1 (best)

Gene COMMD3, Length 2,290 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-215ENST00000602574 SMTNP53814 917 aa10.12□□□□□ -0.79
COMMD3-215ENST00000602574 GALNT15Q8N3T1 639 aa10.12□□□□□ -0.79
COMMD3-215ENST00000602574 FNBP4Q8N3X1 1017 aaPredicted RBP10.12□□□□□ -0.79
COMMD3-215ENST00000602574 GPR161Q8N6U8 529 aaKnown RBP10.12□□□□□ -0.79
COMMD3-215ENST00000602574 TMEM87AQ8NBN3 555 aa10.12□□□□□ -0.79
COMMD3-215ENST00000602574 NACC2Q96BF6 587 aa10.12□□□□□ -0.79
COMMD3-215ENST00000602574 FUCA2Q9BTY2 467 aa10.12□□□□□ -0.79
COMMD3-215ENST00000602574 HOXC10Q9NYD6 342 aa10.12□□□□□ -0.79
COMMD3-215ENST00000602574 FAM169AQ9Y6X4 670 aa10.12□□□□□ -0.79
COMMD3-215ENST00000602574 CDK13Q14004 1512 aaKnown RBP10.12□□□□□ -0.79
COMMD3-215ENST00000602574 PIK3C2GO75747 1445 aa10.12□□□□□ -0.79
COMMD3-215ENST00000602574 KIAA0556O60303 1618 aa10.12□□□□□ -0.79
COMMD3-215ENST00000602574 H3BQF6 201 aa10.12□□□□□ -0.79
COMMD3-215ENST00000602574 STK10O94804 968 aaKnown RBP10.12□□□□□ -0.79
COMMD3-215ENST00000602574 HOXD10P28358 340 aa10.12□□□□□ -0.79
COMMD3-215ENST00000602574 ADCY1Q08828 1119 aa10.12□□□□□ -0.79
COMMD3-215ENST00000602574 CUL3Q13618 768 aa10.12□□□□□ -0.79
COMMD3-215ENST00000602574 NUGGCQ68CJ6 796 aa10.12□□□□□ -0.79
COMMD3-215ENST00000602574 ARL10Q8N8L6 244 aa10.12□□□□□ -0.79
COMMD3-215ENST00000602574 ANKRD24Q8TF21 1146 aa10.12□□□□□ -0.79
COMMD3-215ENST00000602574 CHMP7Q8WUX9 453 aaPredicted RBP10.12□□□□□ -0.79
COMMD3-215ENST00000602574 HNRNPLLQ8WVV9 542 aaKnown RBP10.12□□□□□ -0.79
COMMD3-215ENST00000602574 TAF4BQ92750 862 aa10.12□□□□□ -0.79
COMMD3-215ENST00000602574 PARD6BQ9BYG5 372 aa10.12□□□□□ -0.79
COMMD3-215ENST00000602574 LUC7LQ9NQ29 371 aaKnown RBP10.12□□□□□ -0.79
COMMD3-215ENST00000602574 TROQ12816 1431 aaPredicted RBP10.11□□□□□ -0.79
COMMD3-215ENST00000602574 EBAG9O00559 213 aa10.11□□□□□ -0.79
COMMD3-215ENST00000602574 ZEB2O60315 1214 aa10.11□□□□□ -0.79
COMMD3-215ENST00000602574 KCNJ6P48051 423 aa10.11□□□□□ -0.79
COMMD3-215ENST00000602574 MYBPC3Q14896 1274 aa10.11□□□□□ -0.79
COMMD3-215ENST00000602574 CEP85LQ5SZL2 805 aa10.11□□□□□ -0.79
COMMD3-215ENST00000602574 YTHDF3Q7Z739 585 aaKnown RBP10.11□□□□□ -0.79
COMMD3-215ENST00000602574 TMEM110Q86TL2 294 aa10.11□□□□□ -0.79
COMMD3-215ENST00000602574 TRIM58Q8NG06 486 aa10.11□□□□□ -0.79
COMMD3-215ENST00000602574 PPP1R14BQ96C90 147 aa10.11□□□□□ -0.79
COMMD3-215ENST00000602574 CD248Q9HCU0 757 aa10.11□□□□□ -0.79
COMMD3-215ENST00000602574 NSFL1CQ9UNZ2 370 aaKnown RBP10.11□□□□□ -0.79
COMMD3-215ENST00000602574 PPIP5K1Q6PFW1 1433 aa10.11□□□□□ -0.79
COMMD3-215ENST00000602574 CFAP74Q9C0B2 1584 aa10.11□□□□□ -0.79
COMMD3-215ENST00000602574 RTL1A6NKG5 1358 aa10.11□□□□□ -0.79
COMMD3-215ENST00000602574 KIF3BO15066 747 aa10.1□□□□□ -0.79
COMMD3-215ENST00000602574 SHOX2O60902 331 aaPredicted RBP10.1□□□□□ -0.79
COMMD3-215ENST00000602574 TADA3O75528 432 aa10.1□□□□□ -0.79
COMMD3-215ENST00000602574 ZNF189O75820 626 aaPredicted RBP10.1□□□□□ -0.79
COMMD3-215ENST00000602574 SMNDC1O75940 238 aaKnown RBP eCLIP10.1□□□□□ -0.79
COMMD3-215ENST00000602574 IDO1P14902 403 aa10.1□□□□□ -0.79
COMMD3-215ENST00000602574 ZFXP17010 805 aaPredicted RBP10.1□□□□□ -0.79
COMMD3-215ENST00000602574 HDAC4P56524 1084 aa10.1□□□□□ -0.79
COMMD3-215ENST00000602574 APOBRQ0VD83 1088 aa10.1□□□□□ -0.79
COMMD3-215ENST00000602574 DYNC1I2Q13409 638 aaKnown RBP10.1□□□□□ -0.79
COMMD3-215ENST00000602574 DCTN1Q14203 1278 aa10.1□□□□□ -0.79
COMMD3-215ENST00000602574 BRD3Q15059 726 aa10.1□□□□□ -0.79
COMMD3-215ENST00000602574 MIGA1Q8NAN2 632 aa10.1□□□□□ -0.79
COMMD3-215ENST00000602574 RUFY1Q96T51 708 aa10.1□□□□□ -0.79
COMMD3-215ENST00000602574 PICK1Q9NRD5 415 aa10.1□□□□□ -0.79
COMMD3-215ENST00000602574 HDAC6Q9UBN7 1215 aa10.1□□□□□ -0.79
COMMD3-215ENST00000602574 COG6Q9Y2V7 657 aa10.1□□□□□ -0.79
COMMD3-215ENST00000602574 TTC41PQ6P2S7 1318 aa10.1□□□□□ -0.79
COMMD3-215ENST00000602574 TARBP1Q13395 1621 aaKnown RBP10.1□□□□□ -0.79
COMMD3-215ENST00000602574 CCDC151A5D8V7 595 aa10.1□□□□□ -0.79
COMMD3-215ENST00000602574 SMARCA5O60264 1052 aaPredicted RBP10.1□□□□□ -0.79
COMMD3-215ENST00000602574 PENKP01210 267 aaPredicted RBP10.1□□□□□ -0.79
COMMD3-215ENST00000602574 DESP17661 470 aa10.1□□□□□ -0.79
COMMD3-215ENST00000602574 USP11P51784 963 aa10.1□□□□□ -0.79
COMMD3-215ENST00000602574 RC3H1Q5TC82 1133 aaKnown RBP10.1□□□□□ -0.79
COMMD3-215ENST00000602574 PACS1Q6VY07 963 aa10.1□□□□□ -0.79
COMMD3-215ENST00000602574 LRRC49Q8IUZ0 686 aa10.1□□□□□ -0.79
COMMD3-215ENST00000602574 SPC24Q8NBT2 197 aa10.1□□□□□ -0.79
COMMD3-215ENST00000602574 RTEL1Q9NZ71 1219 aa10.1□□□□□ -0.79
COMMD3-215ENST00000602574 VPS18Q9P253 973 aa10.1□□□□□ -0.79
COMMD3-215ENST00000602574 DDX20Q9UHI6 824 aaKnown RBP10.1□□□□□ -0.79
COMMD3-215ENST00000602574 PHF24Q9UPV7 400 aa10.1□□□□□ -0.79
COMMD3-215ENST00000602574 N6AMT1Q9Y5N5 214 aa10.1□□□□□ -0.79
COMMD3-215ENST00000602574 CDC42BPAQ5VT25 1732 aa10.1□□□□□ -0.79
COMMD3-215ENST00000602574 PRAG1Q86YV5 1406 aa10.09□□□□□ -0.79
COMMD3-215ENST00000602574 ENO4A6NNW6 628 aa10.09□□□□□ -0.79
COMMD3-215ENST00000602574 PER1O15534 1290 aaPredicted RBP10.09□□□□□ -0.79
COMMD3-215ENST00000602574 MX1P20591 662 aa10.09□□□□□ -0.79
COMMD3-215ENST00000602574 ARHGAP25P42331 645 aa10.09□□□□□ -0.79
COMMD3-215ENST00000602574 NSUN2Q08J23 767 aaKnown RBP eCLIP10.09□□□□□ -0.79
COMMD3-215ENST00000602574 PTK7Q13308 1070 aa10.09□□□□□ -0.79
COMMD3-215ENST00000602574 CCDC47Q96A33 483 aaKnown RBP10.09□□□□□ -0.79
COMMD3-215ENST00000602574 TRIM11Q96F44 468 aa10.09□□□□□ -0.79
COMMD3-215ENST00000602574 CORO1BQ9BR76 489 aa10.09□□□□□ -0.79
COMMD3-215ENST00000602574 PAPOLBQ9NRJ5 636 aaKnown RBP10.09□□□□□ -0.79
COMMD3-215ENST00000602574 KLC4Q9NSK0 619 aa10.09□□□□□ -0.79
COMMD3-215ENST00000602574 EXOC1Q9NV70 894 aa10.09□□□□□ -0.79
COMMD3-215ENST00000602574 SWAP70Q9UH65 585 aa10.09□□□□□ -0.79
COMMD3-215ENST00000602574 MAPK8IP1Q9UQF2 711 aa10.09□□□□□ -0.79
COMMD3-215ENST00000602574 FAN1Q9Y2M0 1017 aa10.09□□□□□ -0.79
COMMD3-215ENST00000602574 CCDC141Q6ZP82 1450 aa10.09□□□□□ -0.79
COMMD3-215ENST00000602574 PHLPP2Q6ZVD8 1323 aa10.09□□□□□ -0.79
COMMD3-215ENST00000602574 BICDL2A1A5D9 508 aa10.09□□□□□ -0.79
COMMD3-215ENST00000602574 CREB3O43889 395 aa10.09□□□□□ -0.79
COMMD3-215ENST00000602574 RASSF9O75901 435 aa10.09□□□□□ -0.79
COMMD3-215ENST00000602574 CCDC159P0C7I6 412 aa10.09□□□□□ -0.79
COMMD3-215ENST00000602574 INHBCP55103 352 aa10.09□□□□□ -0.79
COMMD3-215ENST00000602574 PHEXP78562 749 aa10.09□□□□□ -0.79
COMMD3-215ENST00000602574 DRP2Q13474 957 aa10.09□□□□□ -0.79
COMMD3-215ENST00000602574 THEMIS2Q5TEJ8 643 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms