RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 BSNDQ8WZ55 320 aa8.34□□□□□ -1.07
SMCHD1-208ENST00000583344 RUSC1Q9BVN2 902 aa8.34□□□□□ -1.07
SMCHD1-208ENST00000583344 SOX1O00570 391 aaPredicted RBP8.33□□□□□ -1.08
SMCHD1-208ENST00000583344 GSC2O15499 205 aa8.33□□□□□ -1.08
SMCHD1-208ENST00000583344 POLR3DP05423 398 aaPredicted RBP8.33□□□□□ -1.08
SMCHD1-208ENST00000583344 IKBKEQ14164 716 aa8.33□□□□□ -1.08
SMCHD1-208ENST00000583344 RNF208Q9H0X6 261 aa8.33□□□□□ -1.08
SMCHD1-208ENST00000583344 AMOTL2Q9Y2J4 779 aa8.33□□□□□ -1.08
SMCHD1-208ENST00000583344 METTL12A8MUP2 240 aa8.32□□□□□ -1.08
SMCHD1-208ENST00000583344 SART1O43290 800 aaKnown RBP8.32□□□□□ -1.08
SMCHD1-208ENST00000583344 MED26O95402 600 aa8.32□□□□□ -1.08
SMCHD1-208ENST00000583344 CD97P48960 835 aa8.32□□□□□ -1.08
SMCHD1-208ENST00000583344 ARL4DP49703 201 aa8.32□□□□□ -1.08
SMCHD1-208ENST00000583344 NFIAQ12857 509 aa8.32□□□□□ -1.08
SMCHD1-208ENST00000583344 ANKRD34AQ69YU3 496 aa8.32□□□□□ -1.08
SMCHD1-208ENST00000583344 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.32□□□□□ -1.08
SMCHD1-208ENST00000583344 FAM20CQ8IXL6 584 aa8.32□□□□□ -1.08
SMCHD1-208ENST00000583344 USP26Q9BXU7 913 aa8.32□□□□□ -1.08
SMCHD1-208ENST00000583344 BHLHE41Q9C0J9 482 aaPredicted RBP8.32□□□□□ -1.08
SMCHD1-208ENST00000583344 BMP3P12645 472 aa8.31□□□□□ -1.08
SMCHD1-208ENST00000583344 SERPINB4P48594 390 aa8.31□□□□□ -1.08
SMCHD1-208ENST00000583344 FDX2Q6P4F2 183 aa8.31□□□□□ -1.08
SMCHD1-208ENST00000583344 ZDHHC13Q8IUH4 622 aa8.31□□□□□ -1.08
SMCHD1-208ENST00000583344 KCNF1Q9H3M0 494 aa8.31□□□□□ -1.08
SMCHD1-208ENST00000583344 ZFYVE28Q9HCC9 887 aa8.31□□□□□ -1.08
SMCHD1-208ENST00000583344 RNF43Q68DV7 783 aa8.3□□□□□ -1.08
SMCHD1-208ENST00000583344 H3BRB1 525 aa8.29□□□□□ -1.08
SMCHD1-208ENST00000583344 DLGAP3O95886 979 aa8.29□□□□□ -1.08
SMCHD1-208ENST00000583344 ESRRAP11474 423 aaPredicted RBP8.29□□□□□ -1.08
SMCHD1-208ENST00000583344 BEND4Q6ZU67 534 aa8.29□□□□□ -1.08
SMCHD1-208ENST00000583344 DBNDD2Q9BQY9 259 aa8.29□□□□□ -1.08
SMCHD1-208ENST00000583344 KRTAP9-2Q9BYQ4 174 aa8.29□□□□□ -1.08
SMCHD1-208ENST00000583344 TUT1Q9H6E5 874 aaKnown RBP8.29□□□□□ -1.08
SMCHD1-208ENST00000583344 USTQ9Y2C2 406 aa8.29□□□□□ -1.08
SMCHD1-208ENST00000583344 LOC100289279A0A1B0GTE1 492 aa8.28□□□□□ -1.08
SMCHD1-208ENST00000583344 GAS2O43903 313 aaKnown RBP8.28□□□□□ -1.08
SMCHD1-208ENST00000583344 ICMTO60725 284 aa8.28□□□□□ -1.08
SMCHD1-208ENST00000583344 CLEC10AQ8IUN9 316 aa8.28□□□□□ -1.08
SMCHD1-208ENST00000583344 FAM83CQ9BQN1 747 aa8.28□□□□□ -1.08
SMCHD1-208ENST00000583344 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.27□□□□□ -1.09
SMCHD1-208ENST00000583344 COBLO75128 1261 aa8.27□□□□□ -1.09
SMCHD1-208ENST00000583344 SGO2Q562F6 1265 aa8.27□□□□□ -1.09
SMCHD1-208ENST00000583344 USPL1Q5W0Q7 1092 aa8.27□□□□□ -1.09
SMCHD1-208ENST00000583344 TMPRSS13Q9BYE2 586 aa8.27□□□□□ -1.09
SMCHD1-208ENST00000583344 EGFL7Q9UHF1 273 aa8.27□□□□□ -1.09
SMCHD1-208ENST00000583344 A0A1W2PP55 124 aa8.26□□□□□ -1.09
SMCHD1-208ENST00000583344 MEGF11A6BM72 1044 aa8.26□□□□□ -1.09
SMCHD1-208ENST00000583344 GSTM4Q03013 218 aa8.26□□□□□ -1.09
SMCHD1-208ENST00000583344 ECM1Q16610 540 aa8.26□□□□□ -1.09
SMCHD1-208ENST00000583344 NUTM2GQ5VZR2 741 aa8.26□□□□□ -1.09
SMCHD1-208ENST00000583344 GLYCTKQ8IVS8 523 aa8.26□□□□□ -1.09
SMCHD1-208ENST00000583344 C12orf50Q8NA57 414 aaPredicted RBP8.26□□□□□ -1.09
SMCHD1-208ENST00000583344 SHKBP1Q8TBC3 707 aa8.26□□□□□ -1.09
SMCHD1-208ENST00000583344 SOX17Q9H6I2 414 aaPredicted RBP8.26□□□□□ -1.09
SMCHD1-208ENST00000583344 HIF3AQ9Y2N7 669 aa8.26□□□□□ -1.09
SMCHD1-208ENST00000583344 PRR19A6NJB7 356 aa8.25□□□□□ -1.09
SMCHD1-208ENST00000583344 KIAA1324LA8MWY0 1029 aaPredicted RBP8.25□□□□□ -1.09
SMCHD1-208ENST00000583344 MAP4P27816 1152 aaKnown RBP8.25□□□□□ -1.09
SMCHD1-208ENST00000583344 SPRED3Q2MJR0 410 aa8.25□□□□□ -1.09
SMCHD1-208ENST00000583344 GALNT12Q8IXK2 581 aa8.25□□□□□ -1.09
SMCHD1-208ENST00000583344 BRPF3Q9ULD4 1205 aa8.25□□□□□ -1.09
SMCHD1-208ENST00000583344 KRTAP9-6A0A140TA67 174 aa8.24□□□□□ -1.09
SMCHD1-208ENST00000583344 TIAF1O95411 115 aa8.24□□□□□ -1.09
SMCHD1-208ENST00000583344 DRD2P14416 443 aa8.24□□□□□ -1.09
SMCHD1-208ENST00000583344 GRIA4P48058 902 aa8.24□□□□□ -1.09
SMCHD1-208ENST00000583344 B4GALNT3Q6L9W6 998 aa8.24□□□□□ -1.09
SMCHD1-208ENST00000583344 CCNJLQ8IV13 435 aa8.24□□□□□ -1.09
SMCHD1-208ENST00000583344 SMG8Q8ND04 991 aaKnown RBP8.24□□□□□ -1.09
SMCHD1-208ENST00000583344 MFSD14AQ96MC6 490 aa8.24□□□□□ -1.09
SMCHD1-208ENST00000583344 TCF12Q99081 682 aa8.24□□□□□ -1.09
SMCHD1-208ENST00000583344 ARID3AQ99856 593 aa8.24□□□□□ -1.09
SMCHD1-208ENST00000583344 A0A096LPE4 126 aa8.23□□□□□ -1.09
SMCHD1-208ENST00000583344 A0A1W2PPZ6 126 aa8.23□□□□□ -1.09
SMCHD1-208ENST00000583344 ADAMTS4O75173 837 aa8.23□□□□□ -1.09
SMCHD1-208ENST00000583344 RXRBP28702 533 aa8.23□□□□□ -1.09
SMCHD1-208ENST00000583344 ARHGAP4P98171 946 aa8.23□□□□□ -1.09
SMCHD1-208ENST00000583344 PCDH1Q08174 1060 aa8.23□□□□□ -1.09
SMCHD1-208ENST00000583344 NRSN2Q9GZP1 204 aa8.23□□□□□ -1.09
SMCHD1-208ENST00000583344 SUGCTQ9HAC7 445 aa8.23□□□□□ -1.09
SMCHD1-208ENST00000583344 LIN7BQ9HAP6 207 aa8.23□□□□□ -1.09
SMCHD1-208ENST00000583344 CYP4F12Q9HCS2 524 aa8.23□□□□□ -1.09
SMCHD1-208ENST00000583344 WDR64B1ANS9 1081 aa8.22□□□□□ -1.09
SMCHD1-208ENST00000583344 SPINK2P20155 84 aa8.22□□□□□ -1.09
SMCHD1-208ENST00000583344 ORC1Q13415 861 aa8.22□□□□□ -1.09
SMCHD1-208ENST00000583344 ZNF423Q2M1K9 1284 aa8.22□□□□□ -1.09
SMCHD1-208ENST00000583344 CLEC4MQ9H2X3 399 aaPredicted RBP8.22□□□□□ -1.09
SMCHD1-208ENST00000583344 CTSBP07858 339 aa8.21□□□□□ -1.1
SMCHD1-208ENST00000583344 GRIK1P39086 918 aa8.21□□□□□ -1.1
SMCHD1-208ENST00000583344 NDUFB5O43674 189 aa8.2□□□□□ -1.1
SMCHD1-208ENST00000583344 EXOSC6Q5RKV6 272 aaKnown RBP8.2□□□□□ -1.1
SMCHD1-208ENST00000583344 MCTP1Q6DN14 999 aa8.2□□□□□ -1.1
SMCHD1-208ENST00000583344 CDPF1Q6NVV7 123 aa8.2□□□□□ -1.1
SMCHD1-208ENST00000583344 INTS5Q6P9B9 1019 aaKnown RBP8.2□□□□□ -1.1
SMCHD1-208ENST00000583344 SHISA5Q8N114 240 aa8.2□□□□□ -1.1
SMCHD1-208ENST00000583344 FBXL6Q8N531 539 aa8.2□□□□□ -1.1
SMCHD1-208ENST00000583344 C2CD4AQ8NCU7 369 aaPredicted RBP8.2□□□□□ -1.1
SMCHD1-208ENST00000583344 FBLIM1Q8WUP2 373 aa8.2□□□□□ -1.1
SMCHD1-208ENST00000583344 NPHS2Q9NP85 383 aa8.2□□□□□ -1.1
SMCHD1-208ENST00000583344 OAS3Q9Y6K5 1087 aaKnown RBP8.2□□□□□ -1.1
SMCHD1-208ENST00000583344 MAOBP27338 520 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms