RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 NLRP12P59046 1061 aa9.58□□□□□ -0.88
SMCHD1-202ENST00000577300 IKBKEQ14164 716 aa9.58□□□□□ -0.88
SMCHD1-202ENST00000577300 SOX17Q9H6I2 414 aaPredicted RBP9.58□□□□□ -0.88
SMCHD1-202ENST00000577300 MEGF11A6BM72 1044 aa9.57□□□□□ -0.88
SMCHD1-202ENST00000577300 HGSNATQ68CP4 663 aa9.57□□□□□ -0.88
SMCHD1-202ENST00000577300 RUSC1Q9BVN2 902 aa9.57□□□□□ -0.88
SMCHD1-202ENST00000577300 LATS2Q9NRM7 1088 aa9.57□□□□□ -0.88
SMCHD1-202ENST00000577300 ECM1Q16610 540 aa9.56□□□□□ -0.88
SMCHD1-202ENST00000577300 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.56□□□□□ -0.88
SMCHD1-202ENST00000577300 H3BRB1 525 aa9.55□□□□□ -0.88
SMCHD1-202ENST00000577300 SART1O43290 800 aaKnown RBP9.55□□□□□ -0.88
SMCHD1-202ENST00000577300 SERPINB4P48594 390 aa9.55□□□□□ -0.88
SMCHD1-202ENST00000577300 GLYCTKQ8IVS8 523 aa9.55□□□□□ -0.88
SMCHD1-202ENST00000577300 GALNT12Q8IXK2 581 aa9.55□□□□□ -0.88
SMCHD1-202ENST00000577300 FAM20CQ8IXL6 584 aa9.55□□□□□ -0.88
SMCHD1-202ENST00000577300 ASAP3Q8TDY4 903 aa9.55□□□□□ -0.88
SMCHD1-202ENST00000577300 TUT1Q9H6E5 874 aaKnown RBP9.55□□□□□ -0.88
SMCHD1-202ENST00000577300 C7orf69Q9H7B7 122 aa9.55□□□□□ -0.88
SMCHD1-202ENST00000577300 HIF3AQ9Y2N7 669 aa9.55□□□□□ -0.88
SMCHD1-202ENST00000577300 ESRRAP11474 423 aaPredicted RBP9.54□□□□□ -0.88
SMCHD1-202ENST00000577300 PREPP48147 710 aa9.54□□□□□ -0.88
SMCHD1-202ENST00000577300 CLEC10AQ8IUN9 316 aa9.54□□□□□ -0.88
SMCHD1-202ENST00000577300 KRTAP4-8Q9BYQ9 185 aa9.54□□□□□ -0.88
SMCHD1-202ENST00000577300 BRPF3Q9ULD4 1205 aa9.54□□□□□ -0.88
SMCHD1-202ENST00000577300 EIF4EBP3O60516 100 aaPredicted RBP9.53□□□□□ -0.88
SMCHD1-202ENST00000577300 NFIAQ12857 509 aa9.53□□□□□ -0.88
SMCHD1-202ENST00000577300 RNF43Q68DV7 783 aa9.53□□□□□ -0.88
SMCHD1-202ENST00000577300 FDX2Q6P4F2 183 aa9.53□□□□□ -0.88
SMCHD1-202ENST00000577300 ERICH6Q7L0X2 663 aa9.53□□□□□ -0.88
SMCHD1-202ENST00000577300 TRIM42Q8IWZ5 723 aa9.53□□□□□ -0.88
SMCHD1-202ENST00000577300 POLR3DP05423 398 aaPredicted RBP9.52□□□□□ -0.89
SMCHD1-202ENST00000577300 NEFLP07196 543 aa9.52□□□□□ -0.89
SMCHD1-202ENST00000577300 BMP3P12645 472 aa9.52□□□□□ -0.89
SMCHD1-202ENST00000577300 CD97P48960 835 aa9.52□□□□□ -0.89
SMCHD1-202ENST00000577300 ARHGAP4P98171 946 aa9.52□□□□□ -0.89
SMCHD1-202ENST00000577300 FAM83CQ9BQN1 747 aa9.52□□□□□ -0.89
SMCHD1-202ENST00000577300 DBNDD2Q9BQY9 259 aa9.52□□□□□ -0.89
SMCHD1-202ENST00000577300 TMPRSS13Q9BYE2 586 aa9.52□□□□□ -0.89
SMCHD1-202ENST00000577300 LOC100289279A0A1B0GTE1 492 aa9.51□□□□□ -0.89
SMCHD1-202ENST00000577300 A0A1W2PP55 124 aa9.51□□□□□ -0.89
SMCHD1-202ENST00000577300 HMX2A2RU54 273 aa9.51□□□□□ -0.89
SMCHD1-202ENST00000577300 ZDHHC13Q8IUH4 622 aa9.51□□□□□ -0.89
SMCHD1-202ENST00000577300 CCNJLQ8IV13 435 aa9.51□□□□□ -0.89
SMCHD1-202ENST00000577300 SUGCTQ9HAC7 445 aa9.51□□□□□ -0.89
SMCHD1-202ENST00000577300 PCMTD2Q9NV79 361 aa9.51□□□□□ -0.89
SMCHD1-202ENST00000577300 METTL12A8MUP2 240 aa9.5□□□□□ -0.89
SMCHD1-202ENST00000577300 NDUFB5O43674 189 aa9.5□□□□□ -0.89
SMCHD1-202ENST00000577300 PDE3BQ13370 1112 aa9.5□□□□□ -0.89
SMCHD1-202ENST00000577300 TXNDC2Q86VQ3 553 aa9.5□□□□□ -0.89
SMCHD1-202ENST00000577300 SMG8Q8ND04 991 aaKnown RBP9.5□□□□□ -0.89
SMCHD1-202ENST00000577300 PSMG3-AS1Q96PY0 264 aa9.5□□□□□ -0.89
SMCHD1-202ENST00000577300 CITED4Q96RK1 184 aa9.5□□□□□ -0.89
SMCHD1-202ENST00000577300 TCF12Q99081 682 aa9.5□□□□□ -0.89
SMCHD1-202ENST00000577300 USP26Q9BXU7 913 aa9.5□□□□□ -0.89
SMCHD1-202ENST00000577300 A0A096LPE4 126 aa9.49□□□□□ -0.89
SMCHD1-202ENST00000577300 A0A1W2PPZ6 126 aa9.49□□□□□ -0.89
SMCHD1-202ENST00000577300 COBLO75128 1261 aa9.49□□□□□ -0.89
SMCHD1-202ENST00000577300 TGFB1P01137 390 aa9.49□□□□□ -0.89
SMCHD1-202ENST00000577300 SSTR4P31391 388 aa9.49□□□□□ -0.89
SMCHD1-202ENST00000577300 PDE4CQ08493 712 aa9.49□□□□□ -0.89
SMCHD1-202ENST00000577300 NUTM2GQ5VZR2 741 aa9.49□□□□□ -0.89
SMCHD1-202ENST00000577300 BEND4Q6ZU67 534 aa9.49□□□□□ -0.89
SMCHD1-202ENST00000577300 FAM129BQ96TA1 746 aa9.49□□□□□ -0.89
SMCHD1-202ENST00000577300 KCNF1Q9H3M0 494 aa9.49□□□□□ -0.89
SMCHD1-202ENST00000577300 LIN7BQ9HAP6 207 aa9.49□□□□□ -0.89
SMCHD1-202ENST00000577300 CYP4F12Q9HCS2 524 aa9.49□□□□□ -0.89
SMCHD1-202ENST00000577300 KIAA1324LA8MWY0 1029 aaPredicted RBP9.48□□□□□ -0.89
SMCHD1-202ENST00000577300 GAS2O43903 313 aaKnown RBP9.48□□□□□ -0.89
SMCHD1-202ENST00000577300 TIAF1O95411 115 aa9.48□□□□□ -0.89
SMCHD1-202ENST00000577300 EXOSC6Q5RKV6 272 aaKnown RBP9.48□□□□□ -0.89
SMCHD1-202ENST00000577300 KIAA0319Q5VV43 1072 aa9.48□□□□□ -0.89
SMCHD1-202ENST00000577300 NRSN2Q9GZP1 204 aa9.48□□□□□ -0.89
SMCHD1-202ENST00000577300 CLEC4MQ9H2X3 399 aaPredicted RBP9.48□□□□□ -0.89
SMCHD1-202ENST00000577300 DLGAP3O95886 979 aa9.47□□□□□ -0.89
SMCHD1-202ENST00000577300 GRIA4P48058 902 aa9.47□□□□□ -0.89
SMCHD1-202ENST00000577300 GSTM4Q03013 218 aa9.47□□□□□ -0.89
SMCHD1-202ENST00000577300 PCDH1Q08174 1060 aa9.47□□□□□ -0.89
SMCHD1-202ENST00000577300 RETREG2Q8NC44 543 aa9.47□□□□□ -0.89
SMCHD1-202ENST00000577300 USPL1Q5W0Q7 1092 aa9.46□□□□□ -0.9
SMCHD1-202ENST00000577300 INTS5Q6P9B9 1019 aaKnown RBP9.46□□□□□ -0.9
SMCHD1-202ENST00000577300 C12orf50Q8NA57 414 aaPredicted RBP9.46□□□□□ -0.9
SMCHD1-202ENST00000577300 ARID3AQ99856 593 aa9.46□□□□□ -0.9
SMCHD1-202ENST00000577300 PRR19A6NJB7 356 aa9.45□□□□□ -0.9
SMCHD1-202ENST00000577300 CPNE3O75131 537 aaKnown RBP9.45□□□□□ -0.9
SMCHD1-202ENST00000577300 MED26O95402 600 aa9.45□□□□□ -0.9
SMCHD1-202ENST00000577300 MAP4P27816 1152 aaKnown RBP9.45□□□□□ -0.9
SMCHD1-202ENST00000577300 ZNF423Q2M1K9 1284 aa9.45□□□□□ -0.9
SMCHD1-202ENST00000577300 SPRED3Q2MJR0 410 aa9.45□□□□□ -0.9
SMCHD1-202ENST00000577300 GRIK1P39086 918 aa9.44□□□□□ -0.9
SMCHD1-202ENST00000577300 ORC1Q13415 861 aa9.44□□□□□ -0.9
SMCHD1-202ENST00000577300 SGO2Q562F6 1265 aa9.44□□□□□ -0.9
SMCHD1-202ENST00000577300 IGHA2P01877 340 aa9.43□□□□□ -0.9
SMCHD1-202ENST00000577300 SHKBP1Q8TBC3 707 aa9.43□□□□□ -0.9
SMCHD1-202ENST00000577300 CCER1Q8TC90 406 aaPredicted RBP9.43□□□□□ -0.9
SMCHD1-202ENST00000577300 DNAJC25Q9H1X3 360 aa9.43□□□□□ -0.9
SMCHD1-202ENST00000577300 SUPT5HO00267 1087 aaKnown RBP9.42□□□□□ -0.9
SMCHD1-202ENST00000577300 CYP11A1P05108 521 aa9.42□□□□□ -0.9
SMCHD1-202ENST00000577300 ITPKAP23677 461 aa9.42□□□□□ -0.9
SMCHD1-202ENST00000577300 NPHS2Q9NP85 383 aa9.42□□□□□ -0.9
SMCHD1-202ENST00000577300 GPR182O15218 404 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms