RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 AEBP2Q6ZN18 517 aaPredicted RBP32.48■■■□□ 2.79
SMCHD1-202ENST00000577300 CHIC1Q5VXU3 224 aa31.24■■■□□ 2.59
SMCHD1-202ENST00000577300 SENP3Q9H4L4 574 aaPredicted RBP27.69■■■□□ 2.02
SMCHD1-202ENST00000577300 PHF23Q9BUL5 403 aaPredicted RBP27.39■■□□□ 1.98
SMCHD1-202ENST00000577300 FOXD1Q16676 465 aa25.74■■□□□ 1.71
SMCHD1-202ENST00000577300 PLPPR3Q6T4P5 718 aa25.13■■□□□ 1.61
SMCHD1-202ENST00000577300 PPP6R1Q9UPN7 881 aa24.33■■□□□ 1.49
SMCHD1-202ENST00000577300 ADRA2BP18089 450 aa24.26■■□□□ 1.47
SMCHD1-202ENST00000577300 PIAS4Q8N2W9 510 aaPredicted RBP24.13■■□□□ 1.45
SMCHD1-202ENST00000577300 MSH5O43196 834 aa23.98■■□□□ 1.43
SMCHD1-202ENST00000577300 POTEDQ86YR6 584 aa22.75■■□□□ 1.23
SMCHD1-202ENST00000577300 SCAF1Q9H7N4 1312 aaKnown RBP22.27■■□□□ 1.16
SMCHD1-202ENST00000577300 MAPK8IP2Q13387 824 aaPredicted RBP22.17■■□□□ 1.14
SMCHD1-202ENST00000577300 PPP4R3CPQ6ZMV5 832 aa22.06■■□□□ 1.12
SMCHD1-202ENST00000577300 DMRT2Q9Y5R5 561 aa22.01■■□□□ 1.11
SMCHD1-202ENST00000577300 CNKSR2Q8WXI2 1034 aa21.58■■□□□ 1.05
SMCHD1-202ENST00000577300 HOXD11P31277 338 aaPredicted RBP21.36■■□□□ 1.01
SMCHD1-202ENST00000577300 NCBP3Q53F19 620 aaKnown RBP21.34■■□□□ 1.01
SMCHD1-202ENST00000577300 RNF216Q9NWF9 866 aaPredicted RBP21.3■■□□□ 1
SMCHD1-202ENST00000577300 DCAF8L1A6NGE4 600 aa21.02■□□□□ 0.96
SMCHD1-202ENST00000577300 NPM3O75607 178 aaKnown RBP21.01■□□□□ 0.95
SMCHD1-202ENST00000577300 KCNA4P22459 653 aa20.9■□□□□ 0.94
SMCHD1-202ENST00000577300 DNAJC5BQ9UF47 199 aa20.62■□□□□ 0.89
SMCHD1-202ENST00000577300 RNF39Q9H2S5 420 aa20.49■□□□□ 0.87
SMCHD1-202ENST00000577300 CACNB1Q02641 598 aaPredicted RBP20.31■□□□□ 0.84
SMCHD1-202ENST00000577300 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.31■□□□□ 0.84
SMCHD1-202ENST00000577300 C1QBPQ07021 282 aaKnown RBP20.23■□□□□ 0.83
SMCHD1-202ENST00000577300 SLC4A2P04920 1241 aa19.96■□□□□ 0.79
SMCHD1-202ENST00000577300 U3KPZ7 1027 aaPredicted RBP19.94■□□□□ 0.78
SMCHD1-202ENST00000577300 SLC4A1APQ9BWU0 796 aaKnown RBP19.82■□□□□ 0.76
SMCHD1-202ENST00000577300 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.54■□□□□ 0.72
SMCHD1-202ENST00000577300 HNRNPUL2Q1KMD3 747 aaKnown RBP19.54■□□□□ 0.72
SMCHD1-202ENST00000577300 SPINK5Q9NQ38 1064 aaPredicted RBP19.51■□□□□ 0.71
SMCHD1-202ENST00000577300 APLP2Q06481 763 aa19.47■□□□□ 0.71
SMCHD1-202ENST00000577300 CAPN15O75808 1086 aa19.46■□□□□ 0.71
SMCHD1-202ENST00000577300 MYCNP04198 464 aaPredicted RBP19.45■□□□□ 0.7
SMCHD1-202ENST00000577300 SAMD1Q6SPF0 538 aaPredicted RBP19.43■□□□□ 0.7
SMCHD1-202ENST00000577300 FOXD4L1Q9NU39 408 aa19.43■□□□□ 0.7
SMCHD1-202ENST00000577300 DSG3P32926 999 aa19.3■□□□□ 0.68
SMCHD1-202ENST00000577300 ZNF219Q9P2Y4 722 aaPredicted RBP19.27■□□□□ 0.68
SMCHD1-202ENST00000577300 TRHP20396 242 aaPredicted RBP19.23■□□□□ 0.67
SMCHD1-202ENST00000577300 ZBTB22O15209 634 aa19.22■□□□□ 0.67
SMCHD1-202ENST00000577300 ABCB7O75027 752 aa19.02■□□□□ 0.64
SMCHD1-202ENST00000577300 ATF5Q9Y2D1 282 aaPredicted RBP18.92■□□□□ 0.62
SMCHD1-202ENST00000577300 ATXN8OSP0DMR3 200 aa18.84■□□□□ 0.61
SMCHD1-202ENST00000577300 POLA2Q14181 598 aa18.81■□□□□ 0.6
SMCHD1-202ENST00000577300 CSRNP3Q8WYN3 585 aa18.68■□□□□ 0.58
SMCHD1-202ENST00000577300 EHMT2Q96KQ7 1210 aa18.58■□□□□ 0.56
SMCHD1-202ENST00000577300 ZBTB12Q9Y330 459 aaPredicted RBP18.52■□□□□ 0.56
SMCHD1-202ENST00000577300 RBM42Q9BTD8 480 aaKnown RBP18.43■□□□□ 0.54
SMCHD1-202ENST00000577300 FBLN2P98095 1184 aa18.19■□□□□ 0.5
SMCHD1-202ENST00000577300 OSCARQ8IYS5 282 aa18.19■□□□□ 0.5
SMCHD1-202ENST00000577300 MKRN4PQ13434 485 aaPredicted RBP18.08■□□□□ 0.48
SMCHD1-202ENST00000577300 AKT1S1Q96B36 256 aa18.08■□□□□ 0.48
SMCHD1-202ENST00000577300 SPDYE2BA6NHP3 402 aa17.97■□□□□ 0.47
SMCHD1-202ENST00000577300 SPDYE6P0CI01 402 aa17.97■□□□□ 0.47
SMCHD1-202ENST00000577300 SPDYE2Q495Y8 402 aa17.97■□□□□ 0.47
SMCHD1-202ENST00000577300 POTEHQ6S545 545 aa17.91■□□□□ 0.46
SMCHD1-202ENST00000577300 REM2Q8IYK8 340 aaPredicted RBP17.88■□□□□ 0.45
SMCHD1-202ENST00000577300 CHRDL2Q6WN34 429 aa17.85■□□□□ 0.45
SMCHD1-202ENST00000577300 ZNF692Q9BU19 519 aaPredicted RBP17.77■□□□□ 0.44
SMCHD1-202ENST00000577300 SSUH2Q9Y2M2 353 aa17.77■□□□□ 0.44
SMCHD1-202ENST00000577300 PITPNM1O00562 1244 aa17.67■□□□□ 0.42
SMCHD1-202ENST00000577300 SPDYE1Q8NFV5 336 aaPredicted RBP17.55■□□□□ 0.4
SMCHD1-202ENST00000577300 PABPN1Q86U42 306 aaKnown RBP eCLIP17.52■□□□□ 0.4
SMCHD1-202ENST00000577300 PIP4P2Q8N4L2 257 aa17.5■□□□□ 0.39
SMCHD1-202ENST00000577300 FXR2P51116 673 aaKnown RBP eCLIP17.48■□□□□ 0.396e-6■□□□□ 9.4
SMCHD1-202ENST00000577300 CLEC11AQ9Y240 323 aa17.45■□□□□ 0.38
SMCHD1-202ENST00000577300 SPDYE4A6NLX3 237 aa17.42■□□□□ 0.38
SMCHD1-202ENST00000577300 PRR29P0C7W0 189 aa17.25■□□□□ 0.35
SMCHD1-202ENST00000577300 PRKAR2AP13861 404 aaKnown RBP17.22■□□□□ 0.35
SMCHD1-202ENST00000577300 STAG3Q9UJ98 1225 aa17.17■□□□□ 0.34
SMCHD1-202ENST00000577300 PROM2Q8N271 834 aa17.1■□□□□ 0.33
SMCHD1-202ENST00000577300 CHADLQ6NUI6 762 aa17.08■□□□□ 0.32
SMCHD1-202ENST00000577300 HAX1O00165 279 aa17.07■□□□□ 0.32
SMCHD1-202ENST00000577300 SP7Q8TDD2 431 aaPredicted RBP16.96■□□□□ 0.31
SMCHD1-202ENST00000577300 C19orf67A6NJJ6 358 aa16.91■□□□□ 0.3
SMCHD1-202ENST00000577300 CREBZFQ9NS37 354 aa16.91■□□□□ 0.3
SMCHD1-202ENST00000577300 FKBP8Q14318 412 aa16.9■□□□□ 0.3
SMCHD1-202ENST00000577300 FARP1Q9Y4F1 1045 aaPredicted RBP16.9■□□□□ 0.3
SMCHD1-202ENST00000577300 EVX2Q03828 476 aa16.87■□□□□ 0.29
SMCHD1-202ENST00000577300 CD44P16070 742 aaKnown RBP16.7■□□□□ 0.26
SMCHD1-202ENST00000577300 MNX1P50219 401 aaPredicted RBP16.68■□□□□ 0.26
SMCHD1-202ENST00000577300 NPM1P06748 294 aaKnown RBP eCLIP16.63■□□□□ 0.25
SMCHD1-202ENST00000577300 MIER1Q8N108 512 aa16.56■□□□□ 0.24
SMCHD1-202ENST00000577300 GABBR2O75899 941 aa16.55■□□□□ 0.24
SMCHD1-202ENST00000577300 PLEKHG5O94827 1062 aa16.55■□□□□ 0.24
SMCHD1-202ENST00000577300 ZRANB1Q9UGI0 708 aa16.52■□□□□ 0.24
SMCHD1-202ENST00000577300 CLCN6P51797 869 aa16.5■□□□□ 0.23
SMCHD1-202ENST00000577300 FBXO3Q9UK99 471 aa16.5■□□□□ 0.23
SMCHD1-202ENST00000577300 ZNF579Q8NAF0 562 aaKnown RBP16.49■□□□□ 0.23
SMCHD1-202ENST00000577300 PAK3O75914 559 aaPredicted RBP16.48■□□□□ 0.23
SMCHD1-202ENST00000577300 PLCD3Q8N3E9 789 aa16.48■□□□□ 0.23
SMCHD1-202ENST00000577300 ZBTB47Q9UFB7 747 aaPredicted RBP16.38■□□□□ 0.21
SMCHD1-202ENST00000577300 PHF12Q96QT6 1004 aa16.3■□□□□ 0.2
SMCHD1-202ENST00000577300 TSPYL2Q9H2G4 693 aaPredicted RBP16.29■□□□□ 0.2
SMCHD1-202ENST00000577300 VASPP50552 380 aaPredicted RBP16.26■□□□□ 0.19
SMCHD1-202ENST00000577300 RASEFQ8IZ41 740 aa16.26■□□□□ 0.19
SMCHD1-202ENST00000577300 CCDC61Q9Y6R9 512 aa16.25■□□□□ 0.19
SMCHD1-202ENST00000577300 GALR2O43603 387 aaPredicted RBP16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms