RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 KBTBD4Q9NVX7 518 aa6.66□□□□□ -1.34
VPS35P1-201ENST00000563400 TMEM260Q9NX78 707 aa6.66□□□□□ -1.34
VPS35P1-201ENST00000563400 PCDHB11Q9Y5F2 797 aa6.66□□□□□ -1.34
VPS35P1-201ENST00000563400 SOS2Q07890 1332 aaPredicted RBP6.65□□□□□ -1.34
VPS35P1-201ENST00000563400 KIAA0556O60303 1618 aa6.65□□□□□ -1.34
VPS35P1-201ENST00000563400 ABCC2Q92887 1545 aa6.65□□□□□ -1.35
VPS35P1-201ENST00000563400 EIF1AYO14602 144 aaKnown RBP6.65□□□□□ -1.35
VPS35P1-201ENST00000563400 FGAP02671 866 aa6.65□□□□□ -1.35
VPS35P1-201ENST00000563400 USP4Q13107 963 aa6.65□□□□□ -1.35
VPS35P1-201ENST00000563400 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.65□□□□□ -1.35
VPS35P1-201ENST00000563400 C10orf62Q5T681 223 aaPredicted RBP6.65□□□□□ -1.35
VPS35P1-201ENST00000563400 CELF2-AS1Q8N7Q2 184 aa6.65□□□□□ -1.35
VPS35P1-201ENST00000563400 SPON2Q9BUD6 331 aa6.65□□□□□ -1.35
VPS35P1-201ENST00000563400 POLMQ9NP87 494 aaPredicted RBP6.65□□□□□ -1.35
VPS35P1-201ENST00000563400 CEP162Q5TB80 1403 aa6.64□□□□□ -1.35
VPS35P1-201ENST00000563400 DISP1Q96F81 1524 aa6.64□□□□□ -1.35
VPS35P1-201ENST00000563400 A0A1W2PRU2 124 aa6.64□□□□□ -1.35
VPS35P1-201ENST00000563400 F6X3S4 739 aa6.64□□□□□ -1.35
VPS35P1-201ENST00000563400 LILRA1O75019 489 aa6.64□□□□□ -1.35
VPS35P1-201ENST00000563400 MYCP01106 439 aaPredicted RBP6.64□□□□□ -1.35
VPS35P1-201ENST00000563400 CNGA1P29973 690 aa6.64□□□□□ -1.35
VPS35P1-201ENST00000563400 PTGIRP43119 386 aa6.64□□□□□ -1.35
VPS35P1-201ENST00000563400 HDAC1Q13547 482 aaPredicted RBP6.64□□□□□ -1.35
VPS35P1-201ENST00000563400 PPP2R5AQ15172 486 aa6.64□□□□□ -1.35
VPS35P1-201ENST00000563400 TTF1Q15361 905 aaPredicted RBP6.64□□□□□ -1.35
VPS35P1-201ENST00000563400 C21orf62-AS1Q17RA5 79 aa6.64□□□□□ -1.35
VPS35P1-201ENST00000563400 DALRD3Q5D0E6 543 aaKnown RBP6.64□□□□□ -1.35
VPS35P1-201ENST00000563400 KRT26Q7Z3Y9 468 aa6.64□□□□□ -1.35
VPS35P1-201ENST00000563400 LRP10Q7Z4F1 713 aa6.64□□□□□ -1.35
VPS35P1-201ENST00000563400 SAMD3Q8N6K7 520 aa6.64□□□□□ -1.35
VPS35P1-201ENST00000563400 IRF7Q92985 503 aa6.64□□□□□ -1.35
VPS35P1-201ENST00000563400 AGBL1Q96MI9 1066 aa6.64□□□□□ -1.35
VPS35P1-201ENST00000563400 SWAP70Q9UH65 585 aa6.64□□□□□ -1.35
VPS35P1-201ENST00000563400 ADAMTS1Q9UHI8 967 aa6.64□□□□□ -1.35
VPS35P1-201ENST00000563400 NRBP1Q9UHY1 535 aa6.64□□□□□ -1.35
VPS35P1-201ENST00000563400 LRFN2Q9ULH4 789 aa6.64□□□□□ -1.35
VPS35P1-201ENST00000563400 ARAP1Q96P48 1450 aa6.63□□□□□ -1.35
VPS35P1-201ENST00000563400 EXOC5O00471 708 aa6.63□□□□□ -1.35
VPS35P1-201ENST00000563400 ZNF500O60304 480 aaPredicted RBP6.63□□□□□ -1.35
VPS35P1-201ENST00000563400 STAU1O95793 577 aaKnown RBP6.63□□□□□ -1.35
VPS35P1-201ENST00000563400 FOSP01100 380 aaPredicted RBP6.63□□□□□ -1.35
VPS35P1-201ENST00000563400 CD53P19397 219 aa6.63□□□□□ -1.35
VPS35P1-201ENST00000563400 ADD1P35611 737 aaKnown RBP6.63□□□□□ -1.35
VPS35P1-201ENST00000563400 ERVK-9P63128 1117 aa6.63□□□□□ -1.35
VPS35P1-201ENST00000563400 DNM1Q05193 864 aaKnown RBP6.63□□□□□ -1.35
VPS35P1-201ENST00000563400 BRD3Q15059 726 aa6.63□□□□□ -1.35
VPS35P1-201ENST00000563400 EFCAB2Q5VUJ9 269 aa6.63□□□□□ -1.35
VPS35P1-201ENST00000563400 CYP2U1Q7Z449 544 aa6.63□□□□□ -1.35
VPS35P1-201ENST00000563400 ANAPC16Q96DE5 110 aa6.63□□□□□ -1.35
VPS35P1-201ENST00000563400 TSPAN10Q9H1Z9 355 aaPredicted RBP6.63□□□□□ -1.35
VPS35P1-201ENST00000563400 MTUS2Q5JR59 1369 aa6.63□□□□□ -1.35
VPS35P1-201ENST00000563400 CASKIN1Q8WXD9 1431 aa6.63□□□□□ -1.35
VPS35P1-201ENST00000563400 SHTN1A0MZ66 631 aa6.62□□□□□ -1.35
VPS35P1-201ENST00000563400 TMEM229AB2RXF0 380 aa6.62□□□□□ -1.35
VPS35P1-201ENST00000563400 SCGB1D2O95969 90 aa6.62□□□□□ -1.35
VPS35P1-201ENST00000563400 VPS72Q15906 364 aa6.62□□□□□ -1.35
VPS35P1-201ENST00000563400 DDX42Q86XP3 938 aaKnown RBP eCLIP6.62□□□□□ -1.35
VPS35P1-201ENST00000563400 KIAA0825Q8IV33 1275 aa6.62□□□□□ -1.35
VPS35P1-201ENST00000563400 INSM2Q96T92 566 aaPredicted RBP6.62□□□□□ -1.35
VPS35P1-201ENST00000563400 NAP1L4Q99733 375 aaKnown RBP6.62□□□□□ -1.35
VPS35P1-201ENST00000563400 ZNF395Q9H8N7 513 aaPredicted RBP6.62□□□□□ -1.35
VPS35P1-201ENST00000563400 ST7Q9NRC1 585 aa6.62□□□□□ -1.35
VPS35P1-201ENST00000563400 ENAMQ9NRM1 1142 aa6.62□□□□□ -1.35
VPS35P1-201ENST00000563400 DNMT3LQ9UJW3 386 aa6.62□□□□□ -1.35
VPS35P1-201ENST00000563400 MSRB2Q9Y3D2 182 aa6.62□□□□□ -1.35
VPS35P1-201ENST00000563400 TEX14Q8IWB6 1497 aa6.62□□□□□ -1.35
VPS35P1-201ENST00000563400 CFAP69A5D8W1 941 aa6.61□□□□□ -1.35
VPS35P1-201ENST00000563400 SOBPA7XYQ1 873 aa6.61□□□□□ -1.35
VPS35P1-201ENST00000563400 KCNQ2O43526 872 aa6.61□□□□□ -1.35
VPS35P1-201ENST00000563400 NRDCO43847 1150 aa6.61□□□□□ -1.35
VPS35P1-201ENST00000563400 MYL1P05976 194 aa6.61□□□□□ -1.35
VPS35P1-201ENST00000563400 IRS1P35568 1242 aa6.61□□□□□ -1.35
VPS35P1-201ENST00000563400 ZRSR2Q15696 482 aaKnown RBP6.61□□□□□ -1.35
VPS35P1-201ENST00000563400 EDEM1Q92611 657 aa6.61□□□□□ -1.35
VPS35P1-201ENST00000563400 EAF1Q96JC9 268 aaPredicted RBP6.61□□□□□ -1.35
VPS35P1-201ENST00000563400 NLRP3Q96P20 1036 aa6.61□□□□□ -1.35
VPS35P1-201ENST00000563400 CCDC113Q9H0I3 377 aa6.61□□□□□ -1.35
VPS35P1-201ENST00000563400 INTUQ9ULD6 942 aa6.61□□□□□ -1.35
VPS35P1-201ENST00000563400 R3HCC1Q9Y3T6 440 aaKnown RBP6.61□□□□□ -1.35
VPS35P1-201ENST00000563400 FHOD3Q2V2M9 1422 aa6.61□□□□□ -1.35
VPS35P1-201ENST00000563400 FYCO1Q9BQS8 1478 aa6.61□□□□□ -1.35
VPS35P1-201ENST00000563400 KDM5BQ9UGL1 1544 aa6.61□□□□□ -1.35
VPS35P1-201ENST00000563400 SAMD9Q5K651 1589 aa6.61□□□□□ -1.35
VPS35P1-201ENST00000563400 HECW1Q76N89 1606 aa6.61□□□□□ -1.35
VPS35P1-201ENST00000563400 FIGNL2A6NMB9 653 aa6.6□□□□□ -1.35
VPS35P1-201ENST00000563400 WASLO00401 505 aaPredicted RBP6.6□□□□□ -1.35
VPS35P1-201ENST00000563400 ATF3P18847 181 aa6.6□□□□□ -1.35
VPS35P1-201ENST00000563400 CDC27P30260 824 aa6.6□□□□□ -1.35
VPS35P1-201ENST00000563400 EPHB1P54762 984 aa6.6□□□□□ -1.35
VPS35P1-201ENST00000563400 TBCELQ5QJ74 424 aa6.6□□□□□ -1.35
VPS35P1-201ENST00000563400 AXDND1Q5T1B0 1012 aaPredicted RBP6.6□□□□□ -1.35
VPS35P1-201ENST00000563400 PRKAG3Q9UGI9 489 aa6.6□□□□□ -1.35
VPS35P1-201ENST00000563400 CD2APQ9Y5K6 639 aa6.6□□□□□ -1.35
VPS35P1-201ENST00000563400 MAPKBP1O60336 1514 aa6.6□□□□□ -1.35
VPS35P1-201ENST00000563400 ARHGAP35Q9NRY4 1499 aa6.6□□□□□ -1.35
VPS35P1-201ENST00000563400 VPS8Q8N3P4 1428 aa6.6□□□□□ -1.35
VPS35P1-201ENST00000563400 WASHC2CQ9Y4E1 1318 aa6.6□□□□□ -1.35
VPS35P1-201ENST00000563400 H3BM21 787 aa6.6□□□□□ -1.35
VPS35P1-201ENST00000563400 SMAD7O15105 426 aaKnown RBP6.6□□□□□ -1.35
VPS35P1-201ENST00000563400 PDGFAP04085 211 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms