RNA–Protein interactions for RNA: ENST00000557352.1

VRK1-207, Transcript of vaccinia related kinase 1, humanhuman

TSL 5

Gene VRK1, Length 599 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-207ENST00000557352 RETREG2Q8NC44 543 aa8.45□□□□□ -1.06
VRK1-207ENST00000557352 BHLHE41Q9C0J9 482 aaPredicted RBP8.45□□□□□ -1.06
VRK1-207ENST00000557352 BRPF3Q9ULD4 1205 aa8.45□□□□□ -1.06
VRK1-207ENST00000557352 SOX1O00570 391 aaPredicted RBP8.44□□□□□ -1.06
VRK1-207ENST00000557352 NLRP12P59046 1061 aa8.44□□□□□ -1.06
VRK1-207ENST00000557352 ARHGAP4P98171 946 aa8.44□□□□□ -1.06
VRK1-207ENST00000557352 ASAP3Q8TDY4 903 aa8.44□□□□□ -1.06
VRK1-207ENST00000557352 RAXQ9Y2V3 346 aa8.44□□□□□ -1.06
VRK1-207ENST00000557352 ARL4DP49703 201 aa8.43□□□□□ -1.06
VRK1-207ENST00000557352 C19orf57Q0VDD7 668 aa8.43□□□□□ -1.06
VRK1-207ENST00000557352 IKBKEQ14164 716 aa8.43□□□□□ -1.06
VRK1-207ENST00000557352 TXNDC2Q86VQ3 553 aa8.43□□□□□ -1.06
VRK1-207ENST00000557352 FAM46AQ96IP4 442 aaKnown RBP8.43□□□□□ -1.06
VRK1-207ENST00000557352 DHX15O43143 795 aaKnown RBP8.42□□□□□ -1.06
VRK1-207ENST00000557352 UVSSAQ2YD98 709 aa8.42□□□□□ -1.06
VRK1-207ENST00000557352 STOML1Q9UBI4 398 aa8.42□□□□□ -1.06
VRK1-207ENST00000557352 KRTAP9-6A0A140TA67 174 aa8.41□□□□□ -1.06
VRK1-207ENST00000557352 GALNT12Q8IXK2 581 aa8.41□□□□□ -1.06
VRK1-207ENST00000557352 UTP4Q969X6 686 aaKnown RBP8.41□□□□□ -1.06
VRK1-207ENST00000557352 RUSC1Q9BVN2 902 aa8.41□□□□□ -1.06
VRK1-207ENST00000557352 RNF208Q9H0X6 261 aa8.41□□□□□ -1.06
VRK1-207ENST00000557352 METTL12A8MUP2 240 aa8.4□□□□□ -1.06
VRK1-207ENST00000557352 NDUFB5O43674 189 aa8.4□□□□□ -1.06
VRK1-207ENST00000557352 IGLV1-40P01703 118 aa8.4□□□□□ -1.06
VRK1-207ENST00000557352 ANKRD34AQ69YU3 496 aa8.4□□□□□ -1.06
VRK1-207ENST00000557352 MYRFLQ96LU7 910 aa8.4□□□□□ -1.06
VRK1-207ENST00000557352 A0A1W2PP55 124 aa8.39□□□□□ -1.07
VRK1-207ENST00000557352 ESRRAP11474 423 aaPredicted RBP8.39□□□□□ -1.07
VRK1-207ENST00000557352 PDE4CQ08493 712 aa8.39□□□□□ -1.07
VRK1-207ENST00000557352 USPL1Q5W0Q7 1092 aa8.39□□□□□ -1.07
VRK1-207ENST00000557352 SOX17Q9H6I2 414 aaPredicted RBP8.39□□□□□ -1.07
VRK1-207ENST00000557352 MEGF11A6BM72 1044 aa8.38□□□□□ -1.07
VRK1-207ENST00000557352 SART1O43290 800 aaKnown RBP8.38□□□□□ -1.07
VRK1-207ENST00000557352 SSTR4P31391 388 aa8.38□□□□□ -1.07
VRK1-207ENST00000557352 PREPP48147 710 aa8.38□□□□□ -1.07
VRK1-207ENST00000557352 CD97P48960 835 aa8.38□□□□□ -1.07
VRK1-207ENST00000557352 CCNJLQ8IV13 435 aa8.38□□□□□ -1.07
VRK1-207ENST00000557352 FAM129BQ96TA1 746 aa8.38□□□□□ -1.07
VRK1-207ENST00000557352 TCF12Q99081 682 aa8.38□□□□□ -1.07
VRK1-207ENST00000557352 TIMELESSQ9UNS1 1208 aa8.38□□□□□ -1.07
VRK1-207ENST00000557352 GSC2O15499 205 aa8.37□□□□□ -1.07
VRK1-207ENST00000557352 MED26O95402 600 aa8.37□□□□□ -1.07
VRK1-207ENST00000557352 NEFLP07196 543 aa8.37□□□□□ -1.07
VRK1-207ENST00000557352 PDE3BQ13370 1112 aa8.37□□□□□ -1.07
VRK1-207ENST00000557352 ORC1Q13415 861 aa8.37□□□□□ -1.07
VRK1-207ENST00000557352 FDX2Q6P4F2 183 aa8.37□□□□□ -1.07
VRK1-207ENST00000557352 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.37□□□□□ -1.07
VRK1-207ENST00000557352 TRIM42Q8IWZ5 723 aa8.37□□□□□ -1.07
VRK1-207ENST00000557352 FAM20CQ8IXL6 584 aa8.37□□□□□ -1.07
VRK1-207ENST00000557352 CITED4Q96RK1 184 aa8.37□□□□□ -1.07
VRK1-207ENST00000557352 USP26Q9BXU7 913 aa8.37□□□□□ -1.07
VRK1-207ENST00000557352 C7orf69Q9H7B7 122 aa8.37□□□□□ -1.07
VRK1-207ENST00000557352 LIN7BQ9HAP6 207 aa8.37□□□□□ -1.07
VRK1-207ENST00000557352 PCMTD2Q9NV79 361 aa8.37□□□□□ -1.07
VRK1-207ENST00000557352 A0A096LPE4 126 aa8.36□□□□□ -1.07
VRK1-207ENST00000557352 LOC100289279A0A1B0GTE1 492 aa8.36□□□□□ -1.07
VRK1-207ENST00000557352 A0A1W2PPZ6 126 aa8.36□□□□□ -1.07
VRK1-207ENST00000557352 HMX2A2RU54 273 aa8.36□□□□□ -1.07
VRK1-207ENST00000557352 GRIA4P48058 902 aa8.36□□□□□ -1.07
VRK1-207ENST00000557352 CCER1Q8TC90 406 aaPredicted RBP8.36□□□□□ -1.07
VRK1-207ENST00000557352 TMPRSS13Q9BYE2 586 aa8.36□□□□□ -1.07
VRK1-207ENST00000557352 DLGAP3O95886 979 aa8.35□□□□□ -1.07
VRK1-207ENST00000557352 TGFB1P01137 390 aa8.35□□□□□ -1.07
VRK1-207ENST00000557352 IGHA2P01877 340 aa8.35□□□□□ -1.07
VRK1-207ENST00000557352 BMP3P12645 472 aa8.35□□□□□ -1.07
VRK1-207ENST00000557352 GSTM4Q03013 218 aa8.35□□□□□ -1.07
VRK1-207ENST00000557352 NFIAQ12857 509 aa8.35□□□□□ -1.07
VRK1-207ENST00000557352 SPRED3Q2MJR0 410 aa8.35□□□□□ -1.07
VRK1-207ENST00000557352 KIAA0319Q5VV43 1072 aa8.35□□□□□ -1.07
VRK1-207ENST00000557352 ZDHHC13Q8IUH4 622 aa8.35□□□□□ -1.07
VRK1-207ENST00000557352 CLEC10AQ8IUN9 316 aa8.35□□□□□ -1.07
VRK1-207ENST00000557352 CLEC4MQ9H2X3 399 aaPredicted RBP8.35□□□□□ -1.07
VRK1-207ENST00000557352 CPNE3O75131 537 aaKnown RBP8.34□□□□□ -1.07
VRK1-207ENST00000557352 PCDH1Q08174 1060 aa8.34□□□□□ -1.07
VRK1-207ENST00000557352 ZNF423Q2M1K9 1284 aa8.34□□□□□ -1.07
VRK1-207ENST00000557352 NUTM2GQ5VZR2 741 aa8.34□□□□□ -1.07
VRK1-207ENST00000557352 RNF43Q68DV7 783 aa8.34□□□□□ -1.07
VRK1-207ENST00000557352 FAM83CQ9BQN1 747 aa8.34□□□□□ -1.07
VRK1-207ENST00000557352 GPR182O15218 404 aa8.33□□□□□ -1.08
VRK1-207ENST00000557352 BEND4Q6ZU67 534 aa8.33□□□□□ -1.08
VRK1-207ENST00000557352 C12orf50Q8NA57 414 aaPredicted RBP8.33□□□□□ -1.08
VRK1-207ENST00000557352 SMG8Q8ND04 991 aaKnown RBP8.33□□□□□ -1.08
VRK1-207ENST00000557352 TMC1Q8TDI8 760 aa8.33□□□□□ -1.08
VRK1-207ENST00000557352 NRSN2Q9GZP1 204 aa8.33□□□□□ -1.08
VRK1-207ENST00000557352 NIF3L1Q9GZT8 377 aa8.33□□□□□ -1.08
VRK1-207ENST00000557352 KCNF1Q9H3M0 494 aa8.33□□□□□ -1.08
VRK1-207ENST00000557352 SUGCTQ9HAC7 445 aa8.33□□□□□ -1.08
VRK1-207ENST00000557352 NPHS2Q9NP85 383 aa8.33□□□□□ -1.08
VRK1-207ENST00000557352 HIF3AQ9Y2N7 669 aa8.33□□□□□ -1.08
VRK1-207ENST00000557352 KIAA1324LA8MWY0 1029 aaPredicted RBP8.32□□□□□ -1.08
VRK1-207ENST00000557352 GAS2O43903 313 aaKnown RBP8.32□□□□□ -1.08
VRK1-207ENST00000557352 TIAF1O95411 115 aa8.32□□□□□ -1.08
VRK1-207ENST00000557352 EXOSC6Q5RKV6 272 aaKnown RBP8.32□□□□□ -1.08
VRK1-207ENST00000557352 CYP4F12Q9HCS2 524 aa8.32□□□□□ -1.08
VRK1-207ENST00000557352 SOWAHDA6NJG2 315 aa8.31□□□□□ -1.08
VRK1-207ENST00000557352 EIF1AYO14602 144 aaKnown RBP8.31□□□□□ -1.08
VRK1-207ENST00000557352 EIF4EBP3O60516 100 aaPredicted RBP8.31□□□□□ -1.08
VRK1-207ENST00000557352 COBLO75128 1261 aa8.31□□□□□ -1.08
VRK1-207ENST00000557352 CCDC74AQ96AQ1 378 aa8.31□□□□□ -1.08
VRK1-207ENST00000557352 DBNDD2Q9BQY9 259 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms