RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 NEK11Q8NG66 645 aa19.79■□□□□ 0.76
SYNE3-204ENST00000555759 CABS1Q96KC9 395 aa19.79■□□□□ 0.76
SYNE3-204ENST00000555759 TTC21AQ8NDW8 1320 aa19.79■□□□□ 0.76
SYNE3-204ENST00000555759 PTPRKQ15262 1439 aa19.79■□□□□ 0.76
SYNE3-204ENST00000555759 ARHGEF12Q9NZN5 1544 aa19.79■□□□□ 0.76
SYNE3-204ENST00000555759 PUS7Q96PZ0 661 aaKnown RBP19.79■□□□□ 0.76
SYNE3-204ENST00000555759 THOC2Q8NI27 1593 aaKnown RBP19.78■□□□□ 0.76
SYNE3-204ENST00000555759 PCK1P35558 622 aa19.78■□□□□ 0.76
SYNE3-204ENST00000555759 DNMBPQ6XZF7 1577 aa19.78■□□□□ 0.76
SYNE3-204ENST00000555759 TSNAXIP1Q2TAA8 658 aa19.78■□□□□ 0.76
SYNE3-204ENST00000555759 MLKLQ8NB16 471 aa19.78■□□□□ 0.76
SYNE3-204ENST00000555759 KRT13P13646 458 aa19.78■□□□□ 0.76
SYNE3-204ENST00000555759 RPS6KB1P23443 525 aa19.78■□□□□ 0.76
SYNE3-204ENST00000555759 SREK1Q8WXA9 508 aaKnown RBP19.78■□□□□ 0.76
SYNE3-204ENST00000555759 MED4Q9NPJ6 270 aa19.78■□□□□ 0.76
SYNE3-204ENST00000555759 PPFIA4O75335 1185 aa19.77■□□□□ 0.76
SYNE3-204ENST00000555759 KIAA1524Q8TCG1 905 aa19.77■□□□□ 0.76
SYNE3-204ENST00000555759 IQUBQ8NA54 791 aa19.77■□□□□ 0.76
SYNE3-204ENST00000555759 UQCRFS1P1P0C7P4 283 aa19.77■□□□□ 0.76
SYNE3-204ENST00000555759 STX17P56962 302 aa19.77■□□□□ 0.76
SYNE3-204ENST00000555759 UBLCP1Q8WVY7 318 aaPredicted RBP19.77■□□□□ 0.76
SYNE3-204ENST00000555759 MRFAP1L1Q96HT8 127 aa19.77■□□□□ 0.76
SYNE3-204ENST00000555759 FEZ2Q9UHY8 353 aaPredicted RBP19.77■□□□□ 0.76
SYNE3-204ENST00000555759 ACTN2P35609 894 aa19.77■□□□□ 0.75
SYNE3-204ENST00000555759 ERCC6LQ2NKX8 1250 aa19.77■□□□□ 0.75
SYNE3-204ENST00000555759 NEBLO76041 1014 aa19.76■□□□□ 0.75
SYNE3-204ENST00000555759 MEX3CQ5U5Q3 659 aaKnown RBP19.76■□□□□ 0.75
SYNE3-204ENST00000555759 PAF1Q8N7H5 531 aa19.76■□□□□ 0.75
SYNE3-204ENST00000555759 DNAI2Q9GZS0 605 aa19.76■□□□□ 0.75
SYNE3-204ENST00000555759 EFCC1Q9HA90 598 aa19.76■□□□□ 0.75
SYNE3-204ENST00000555759 HMGXB3Q12766 1538 aa19.76■□□□□ 0.75
SYNE3-204ENST00000555759 WHAMMP3Q1A5X7 153 aa19.76■□□□□ 0.75
SYNE3-204ENST00000555759 STMN2Q93045 179 aa19.76■□□□□ 0.75
SYNE3-204ENST00000555759 VCXQ9H320 206 aa19.76■□□□□ 0.75
SYNE3-204ENST00000555759 BANK1Q8NDB2 785 aa19.76■□□□□ 0.75
SYNE3-204ENST00000555759 SNX14Q9Y5W7 946 aa19.76■□□□□ 0.75
SYNE3-204ENST00000555759 TLDC2A0PJX2 215 aa19.76■□□□□ 0.75
SYNE3-204ENST00000555759 WASLO00401 505 aaPredicted RBP19.76■□□□□ 0.75
SYNE3-204ENST00000555759 ASIC1P78348 528 aa19.76■□□□□ 0.75
SYNE3-204ENST00000555759 PDE4BQ07343 736 aa19.76■□□□□ 0.75
SYNE3-204ENST00000555759 APOBRQ0VD83 1088 aa19.76■□□□□ 0.75
SYNE3-204ENST00000555759 TESK2Q96S53 571 aa19.76■□□□□ 0.75
SYNE3-204ENST00000555759 KAT14Q9H8E8 782 aa19.76■□□□□ 0.75
SYNE3-204ENST00000555759 GRIPAP1Q4V328 841 aa19.75■□□□□ 0.75
SYNE3-204ENST00000555759 SPTY2D1Q68D10 685 aaPredicted RBP19.75■□□□□ 0.75
SYNE3-204ENST00000555759 NKIRAS1Q9NYS0 192 aa19.75■□□□□ 0.75
SYNE3-204ENST00000555759 VIMP08670 466 aaKnown RBP19.75■□□□□ 0.75
SYNE3-204ENST00000555759 SETSIPP0DME0 302 aa19.75■□□□□ 0.75
SYNE3-204ENST00000555759 HPDP32754 393 aaPredicted RBP19.75■□□□□ 0.75
SYNE3-204ENST00000555759 NAP1L3Q99457 506 aaPredicted RBP19.75■□□□□ 0.75
SYNE3-204ENST00000555759 ETF1P62495 437 aaKnown RBP19.75■□□□□ 0.75
SYNE3-204ENST00000555759 PAK2Q13177 524 aa19.75■□□□□ 0.75
SYNE3-204ENST00000555759 FAM71BQ8TC56 605 aa19.75■□□□□ 0.75
SYNE3-204ENST00000555759 SNAPC4Q5SXM2 1469 aa19.74■□□□□ 0.75
SYNE3-204ENST00000555759 IFT140Q96RY7 1462 aa19.74■□□□□ 0.75
SYNE3-204ENST00000555759 CFAP57Q96MR6 1250 aa19.74■□□□□ 0.75
SYNE3-204ENST00000555759 ESR2Q92731 530 aa19.74■□□□□ 0.75
SYNE3-204ENST00000555759 JAKMIP2Q96AA8 810 aa19.74■□□□□ 0.75
SYNE3-204ENST00000555759 CWC25Q9NXE8 425 aaPredicted RBP19.74■□□□□ 0.75
SYNE3-204ENST00000555759 PSDA5PKW4 1024 aaPredicted RBP19.74■□□□□ 0.75
SYNE3-204ENST00000555759 NOS1P29475 1434 aa19.73■□□□□ 0.75
SYNE3-204ENST00000555759 FERP16591 822 aa19.73■□□□□ 0.75
SYNE3-204ENST00000555759 CALCOCO2Q13137 446 aa19.73■□□□□ 0.75
SYNE3-204ENST00000555759 ANO1Q5XXA6 986 aa19.73■□□□□ 0.75
SYNE3-204ENST00000555759 NUP58Q9BVL2 599 aa19.73■□□□□ 0.75
SYNE3-204ENST00000555759 SLC8A1P32418 973 aa19.73■□□□□ 0.75
SYNE3-204ENST00000555759 NAA16Q6N069 864 aaPredicted RBP19.73■□□□□ 0.75
SYNE3-204ENST00000555759 CCDC51Q96ER9 411 aa19.73■□□□□ 0.75
SYNE3-204ENST00000555759 SNRKQ9NRH2 765 aa19.73■□□□□ 0.75
SYNE3-204ENST00000555759 SH3BGRP55822 239 aaPredicted RBP19.73■□□□□ 0.75
SYNE3-204ENST00000555759 TOM1L2Q6ZVM7 507 aa19.73■□□□□ 0.75
SYNE3-204ENST00000555759 CUL5Q93034 780 aa19.73■□□□□ 0.75
SYNE3-204ENST00000555759 TSKSQ9UJT2 592 aa19.73■□□□□ 0.75
SYNE3-204ENST00000555759 KIF3CO14782 793 aa19.73■□□□□ 0.75
SYNE3-204ENST00000555759 CALML3P27482 149 aa19.73■□□□□ 0.75
SYNE3-204ENST00000555759 GNAQP50148 359 aa19.73■□□□□ 0.75
SYNE3-204ENST00000555759 LRRC8AQ8IWT6 810 aa19.73■□□□□ 0.75
SYNE3-204ENST00000555759 SEC62Q99442 399 aaKnown RBP19.73■□□□□ 0.75
SYNE3-204ENST00000555759 KCNK9Q9NPC2 374 aa19.73■□□□□ 0.75
SYNE3-204ENST00000555759 SSH2Q76I76 1423 aa19.73■□□□□ 0.75
SYNE3-204ENST00000555759 UGGT2Q9NYU1 1516 aa19.73■□□□□ 0.75
SYNE3-204ENST00000555759 GPT2Q8TD30 523 aa19.72■□□□□ 0.75
SYNE3-204ENST00000555759 TBCAO75347 108 aaKnown RBP19.72■□□□□ 0.75
SYNE3-204ENST00000555759 UBE3BQ7Z3V4 1068 aa19.72■□□□□ 0.75
SYNE3-204ENST00000555759 EHMT1Q9H9B1 1298 aa19.72■□□□□ 0.75
SYNE3-204ENST00000555759 ZRANB1Q9UGI0 708 aa19.72■□□□□ 0.75
SYNE3-204ENST00000555759 GOLGA8KD6RF30 607 aa19.72■□□□□ 0.75
SYNE3-204ENST00000555759 GRM8O00222 908 aa19.72■□□□□ 0.75
SYNE3-204ENST00000555759 CALM1P0DP23 149 aa19.72■□□□□ 0.75
SYNE3-204ENST00000555759 CALM2P0DP24 149 aa19.72■□□□□ 0.75
SYNE3-204ENST00000555759 CALM3P0DP25 149 aa19.72■□□□□ 0.75
SYNE3-204ENST00000555759 MTMR3Q13615 1198 aa19.72■□□□□ 0.75
SYNE3-204ENST00000555759 TSNARE1Q96NA8 513 aa19.72■□□□□ 0.75
SYNE3-204ENST00000555759 COL17A1Q9UMD9 1497 aaPredicted RBP19.72■□□□□ 0.75
SYNE3-204ENST00000555759 NESP48681 1621 aa19.72■□□□□ 0.75
SYNE3-204ENST00000555759 SGSM2O43147 1006 aa19.72■□□□□ 0.75
SYNE3-204ENST00000555759 RILPL1Q5EBL4 403 aa19.72■□□□□ 0.75
SYNE3-204ENST00000555759 CEP128Q6ZU80 1094 aa19.72■□□□□ 0.75
SYNE3-204ENST00000555759 WAPLQ7Z5K2 1190 aa19.72■□□□□ 0.75
SYNE3-204ENST00000555759 MTUS1Q9ULD2 1270 aa19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms