RNA–Protein interactions for RNA: ENST00000541513.2

DDB1-219, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 4

Gene DDB1, Length 958 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-219ENST00000541513 ATCAYQ86WG3 371 aa6.97□□□□□ -1.29
DDB1-219ENST00000541513 SEPT12Q8IYM1 358 aa6.97□□□□□ -1.29
DDB1-219ENST00000541513 MYO1HQ8N1T3 1032 aa6.97□□□□□ -1.29
DDB1-219ENST00000541513 CHAC2Q8WUX2 184 aa6.97□□□□□ -1.29
DDB1-219ENST00000541513 NT5C1AQ9BXI3 368 aa6.97□□□□□ -1.29
DDB1-219ENST00000541513 LDHAL6BQ9BYZ2 381 aaPredicted RBP6.97□□□□□ -1.29
DDB1-219ENST00000541513 KCNQ5Q9NR82 932 aa6.97□□□□□ -1.29
DDB1-219ENST00000541513 MCM8Q9UJA3 840 aa6.97□□□□□ -1.29
DDB1-219ENST00000541513 CDV3Q9UKY7 258 aaKnown RBP6.97□□□□□ -1.29
DDB1-219ENST00000541513 MBD5Q9P267 1494 aa6.97□□□□□ -1.29
DDB1-219ENST00000541513 WASHC2CQ9Y4E1 1318 aa6.97□□□□□ -1.29
DDB1-219ENST00000541513 CROCC2H7BZ55 1655 aa6.96□□□□□ -1.29
DDB1-219ENST00000541513 A0A1W2PRU2 124 aa6.96□□□□□ -1.3
DDB1-219ENST00000541513 SHTN1A0MZ66 631 aa6.96□□□□□ -1.3
DDB1-219ENST00000541513 TBX3O15119 743 aa6.96□□□□□ -1.3
DDB1-219ENST00000541513 CPNE3O75131 537 aaKnown RBP6.96□□□□□ -1.3
DDB1-219ENST00000541513 USP17L7P0C7H9 530 aa6.96□□□□□ -1.3
DDB1-219ENST00000541513 CCNYL3P0C7X3 344 aa6.96□□□□□ -1.3
DDB1-219ENST00000541513 ATF3P18847 181 aa6.96□□□□□ -1.3
DDB1-219ENST00000541513 CNGA1P29973 690 aa6.96□□□□□ -1.3
DDB1-219ENST00000541513 LRRC41Q15345 812 aa6.96□□□□□ -1.3
DDB1-219ENST00000541513 INO80DQ53TQ3 878 aaPredicted RBP6.96□□□□□ -1.3
DDB1-219ENST00000541513 ACBD5Q5T8D3 534 aaPredicted RBP6.96□□□□□ -1.3
DDB1-219ENST00000541513 BRICD5Q6PL45 260 aa6.96□□□□□ -1.3
DDB1-219ENST00000541513 CELF2-AS1Q8N7Q2 184 aa6.96□□□□□ -1.3
DDB1-219ENST00000541513 EAF1Q96JC9 268 aaPredicted RBP6.96□□□□□ -1.3
DDB1-219ENST00000541513 C2orf49Q9BVC5 232 aaPredicted RBP6.96□□□□□ -1.3
DDB1-219ENST00000541513 LRFN2Q9ULH4 789 aa6.96□□□□□ -1.3
DDB1-219ENST00000541513 LZTS1Q9Y250 596 aa6.96□□□□□ -1.3
DDB1-219ENST00000541513 PCDHB11Q9Y5F2 797 aa6.96□□□□□ -1.3
DDB1-219ENST00000541513 DNMT1P26358 1616 aaKnown RBP6.96□□□□□ -1.3
DDB1-219ENST00000541513 MAGI2Q86UL8 1455 aa6.96□□□□□ -1.3
DDB1-219ENST00000541513 ARHGEF40Q8TER5 1519 aa6.96□□□□□ -1.3
DDB1-219ENST00000541513 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.95□□□□□ -1.3
DDB1-219ENST00000541513 HECW2Q9P2P5 1572 aa6.95□□□□□ -1.3
DDB1-219ENST00000541513 INO80Q9ULG1 1556 aaPredicted RBP6.95□□□□□ -1.3
DDB1-219ENST00000541513 MAST1Q9Y2H9 1570 aa6.95□□□□□ -1.3
DDB1-219ENST00000541513 KIDINS220Q9ULH0 1771 aa6.95□□□□□ -1.3
DDB1-219ENST00000541513 RRBP1Q9P2E9 1410 aaKnown RBP6.95□□□□□ -1.3
DDB1-219ENST00000541513 TRAPPC8Q9Y2L5 1435 aa6.95□□□□□ -1.3
DDB1-219ENST00000541513 ACTN4O43707 911 aaKnown RBP6.95□□□□□ -1.3
DDB1-219ENST00000541513 RASGRP1O95267 797 aa6.95□□□□□ -1.3
DDB1-219ENST00000541513 FAM163BP0C2L3 166 aa6.95□□□□□ -1.3
DDB1-219ENST00000541513 HDGFP51858 240 aaKnown RBP6.95□□□□□ -1.3
DDB1-219ENST00000541513 RASSF7Q02833 373 aa6.95□□□□□ -1.3
DDB1-219ENST00000541513 FAM26DQ5JW98 314 aa6.95□□□□□ -1.3
DDB1-219ENST00000541513 SH3RF1Q7Z6J0 888 aa6.95□□□□□ -1.3
DDB1-219ENST00000541513 SDR16C5Q8N3Y7 309 aa6.95□□□□□ -1.3
DDB1-219ENST00000541513 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.95□□□□□ -1.3
DDB1-219ENST00000541513 TTC8Q8TAM2 541 aa6.95□□□□□ -1.3
DDB1-219ENST00000541513 EDEM1Q92611 657 aa6.95□□□□□ -1.3
DDB1-219ENST00000541513 MFSD3Q96ES6 412 aa6.95□□□□□ -1.3
DDB1-219ENST00000541513 SHDQ96IW2 340 aa6.95□□□□□ -1.3
DDB1-219ENST00000541513 ZBED2Q9BTP6 218 aa6.95□□□□□ -1.3
DDB1-219ENST00000541513 TMX4Q9H1E5 349 aaPredicted RBP6.95□□□□□ -1.3
DDB1-219ENST00000541513 TSPAN10Q9H1Z9 355 aaPredicted RBP6.95□□□□□ -1.3
DDB1-219ENST00000541513 CAAP1Q9H8G2 361 aa6.95□□□□□ -1.3
DDB1-219ENST00000541513 ARHGEF10LQ9HCE6 1279 aa6.95□□□□□ -1.3
DDB1-219ENST00000541513 CCDC141Q6ZP82 1450 aa6.95□□□□□ -1.3
DDB1-219ENST00000541513 MLH3Q9UHC1 1453 aa6.94□□□□□ -1.3
DDB1-219ENST00000541513 RAPGEF3O95398 923 aa6.94□□□□□ -1.3
DDB1-219ENST00000541513 DNM1Q05193 864 aaKnown RBP6.94□□□□□ -1.3
DDB1-219ENST00000541513 PROX2Q3B8N5 592 aa6.94□□□□□ -1.3
DDB1-219ENST00000541513 C10orf62Q5T681 223 aaPredicted RBP6.94□□□□□ -1.3
DDB1-219ENST00000541513 PCNX4Q63HM2 1172 aa6.94□□□□□ -1.3
DDB1-219ENST00000541513 NXNQ6DKJ4 435 aa6.94□□□□□ -1.3
DDB1-219ENST00000541513 CCDC174Q6PII3 467 aa6.94□□□□□ -1.3
DDB1-219ENST00000541513 BLOC1S3Q6QNY0 202 aa6.94□□□□□ -1.3
DDB1-219ENST00000541513 POTEAQ6S8J7 498 aa6.94□□□□□ -1.3
DDB1-219ENST00000541513 C14orf80Q86SX3 495 aa6.94□□□□□ -1.3
DDB1-219ENST00000541513 TNS4Q8IZW8 715 aa6.94□□□□□ -1.3
DDB1-219ENST00000541513 ZNF644Q9H582 1327 aaPredicted RBP6.94□□□□□ -1.3
DDB1-219ENST00000541513 RTEL1-TNFRSF6BF6WH68 1400 aa6.93□□□□□ -1.3
DDB1-219ENST00000541513 SHANK2Q9UPX8 1470 aa6.93□□□□□ -1.3
DDB1-219ENST00000541513 ATP7AQ04656 1500 aa6.93□□□□□ -1.3
DDB1-219ENST00000541513 ZFYVE16Q7Z3T8 1539 aa6.93□□□□□ -1.3
DDB1-219ENST00000541513 SMAD7O15105 426 aaKnown RBP6.93□□□□□ -1.3
DDB1-219ENST00000541513 EPB41L2O43491 1005 aaKnown RBP6.93□□□□□ -1.3
DDB1-219ENST00000541513 TIMM44O43615 452 aa6.93□□□□□ -1.3
DDB1-219ENST00000541513 MYCP01106 439 aaPredicted RBP6.93□□□□□ -1.3
DDB1-219ENST00000541513 SOX5P35711 763 aa6.93□□□□□ -1.3
DDB1-219ENST00000541513 EIF4A3P38919 411 aaKnown RBP6.93□□□□□ -1.3
DDB1-219ENST00000541513 SCNN1DP51172 638 aa6.93□□□□□ -1.3
DDB1-219ENST00000541513 HNRNPMP52272 730 aaKnown RBP eCLIP6.93□□□□□ -1.3
DDB1-219ENST00000541513 FOXK2Q01167 660 aa6.93□□□□□ -1.3
DDB1-219ENST00000541513 GRAMD1BQ3KR37 738 aa6.93□□□□□ -1.3
DDB1-219ENST00000541513 CHPFQ8IZ52 775 aa6.93□□□□□ -1.3
DDB1-219ENST00000541513 CPLX3Q8WVH0 158 aa6.93□□□□□ -1.3
DDB1-219ENST00000541513 E2F7Q96AV8 911 aa6.93□□□□□ -1.3
DDB1-219ENST00000541513 ANAPC16Q96DE5 110 aa6.93□□□□□ -1.3
DDB1-219ENST00000541513 CAMKK2Q96RR4 588 aa6.93□□□□□ -1.3
DDB1-219ENST00000541513 SRRTQ9BXP5 876 aaKnown RBP6.93□□□□□ -1.3
DDB1-219ENST00000541513 RBSNQ9H1K0 784 aa6.93□□□□□ -1.3
DDB1-219ENST00000541513 MAPK8IP1Q9UQF2 711 aa6.93□□□□□ -1.3
DDB1-219ENST00000541513 CD2APQ9Y5K6 639 aa6.93□□□□□ -1.3
DDB1-219ENST00000541513 PTCH2Q9Y6C5 1203 aa6.93□□□□□ -1.3
DDB1-219ENST00000541513 ABCA6Q8N139 1617 aa6.93□□□□□ -1.3
DDB1-219ENST00000541513 ADGBQ8N7X0 1667 aa6.93□□□□□ -1.3
DDB1-219ENST00000541513 PLXNC1O60486 1568 aa6.92□□□□□ -1.3
DDB1-219ENST00000541513 REREQ9P2R6 1566 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms