RNA–Protein interactions for RNA: ENST00000541513.2

DDB1-219, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 4

Gene DDB1, Length 958 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-219ENST00000541513 AEBP2Q6ZN18 517 aaPredicted RBP18.04■□□□□ 0.48
DDB1-219ENST00000541513 CHIC1Q5VXU3 224 aa16.68■□□□□ 0.26
DDB1-219ENST00000541513 SENP3Q9H4L4 574 aaPredicted RBP15.35■□□□□ 0.05
DDB1-219ENST00000541513 PHF23Q9BUL5 403 aaPredicted RBP15.11■□□□□ 0.01
DDB1-219ENST00000541513 POTEDQ86YR6 584 aa14.65□□□□□ -0.06
DDB1-219ENST00000541513 FOXD1Q16676 465 aa14.49□□□□□ -0.09
DDB1-219ENST00000541513 MSH5O43196 834 aa13.7□□□□□ -0.22
DDB1-219ENST00000541513 PIAS4Q8N2W9 510 aaPredicted RBP13.31□□□□□ -0.28
DDB1-219ENST00000541513 PPP6R1Q9UPN7 881 aa13.07□□□□□ -0.32
DDB1-219ENST00000541513 ADRA2BP18089 450 aa12.95□□□□□ -0.34
DDB1-219ENST00000541513 PLPPR3Q6T4P5 718 aa12.83□□□□□ -0.36
DDB1-219ENST00000541513 SLC24A1O60721 1099 aa12.48□□□□□ -0.41
DDB1-219ENST00000541513 EHMT2Q96KQ7 1210 aa12.43□□□□□ -0.42
DDB1-219ENST00000541513 CACNB1Q02641 598 aaPredicted RBP12.19□□□□□ -0.46
DDB1-219ENST00000541513 MAPK8IP2Q13387 824 aaPredicted RBP12.12□□□□□ -0.47
DDB1-219ENST00000541513 DMRT2Q9Y5R5 561 aa12.11□□□□□ -0.47
DDB1-219ENST00000541513 KCNA4P22459 653 aa11.92□□□□□ -0.5
DDB1-219ENST00000541513 CSRNP3Q8WYN3 585 aa11.87□□□□□ -0.51
DDB1-219ENST00000541513 RNF39Q9H2S5 420 aa11.71□□□□□ -0.53
DDB1-219ENST00000541513 AMER1Q5JTC6 1135 aaPredicted RBP11.7□□□□□ -0.54
DDB1-219ENST00000541513 SCAF1Q9H7N4 1312 aaKnown RBP11.67□□□□□ -0.54
DDB1-219ENST00000541513 RTN4Q9NQC3 1192 aaKnown RBP11.67□□□□□ -0.54
DDB1-219ENST00000541513 DCAF8L1A6NGE4 600 aa11.58□□□□□ -0.56
DDB1-219ENST00000541513 SLC4A1APQ9BWU0 796 aaKnown RBP11.54□□□□□ -0.56
DDB1-219ENST00000541513 C1QBPQ07021 282 aaKnown RBP11.43□□□□□ -0.58
DDB1-219ENST00000541513 HOXD11P31277 338 aaPredicted RBP11.4□□□□□ -0.58
DDB1-219ENST00000541513 POTEHQ6S545 545 aa11.31□□□□□ -0.6
DDB1-219ENST00000541513 NCBP3Q53F19 620 aaKnown RBP11.25□□□□□ -0.61
DDB1-219ENST00000541513 PPP4R3CPQ6ZMV5 832 aa11.25□□□□□ -0.61
DDB1-219ENST00000541513 RNF216Q9NWF9 866 aaPredicted RBP11.1□□□□□ -0.63
DDB1-219ENST00000541513 DNAJC5BQ9UF47 199 aa11.09□□□□□ -0.63
DDB1-219ENST00000541513 CNKSR2Q8WXI2 1034 aa11.05□□□□□ -0.64
DDB1-219ENST00000541513 ZBTB22O15209 634 aa11.02□□□□□ -0.65
DDB1-219ENST00000541513 DAXXQ9UER7 740 aaPredicted RBP10.89□□□□□ -0.67
DDB1-219ENST00000541513 NISCHQ9Y2I1 1504 aa10.84□□□□□ -0.67
DDB1-219ENST00000541513 NPM3O75607 178 aaKnown RBP10.8□□□□□ -0.68
DDB1-219ENST00000541513 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.79□□□□□ -0.681e-8■□□□□ 9.1
DDB1-219ENST00000541513 BCANQ96GW7 911 aa10.75□□□□□ -0.69
DDB1-219ENST00000541513 PRKCSHP14314 528 aaPredicted RBP10.74□□□□□ -0.69
DDB1-219ENST00000541513 DSG3P32926 999 aa10.74□□□□□ -0.69
DDB1-219ENST00000541513 PLCB2Q00722 1185 aa10.7□□□□□ -0.7
DDB1-219ENST00000541513 TAOK2Q9UL54 1235 aa10.7□□□□□ -0.7
DDB1-219ENST00000541513 FOXD4L1Q9NU39 408 aa10.68□□□□□ -0.7
DDB1-219ENST00000541513 SPINK5Q9NQ38 1064 aaPredicted RBP10.65□□□□□ -0.7
DDB1-219ENST00000541513 ARXQ96QS3 562 aa10.62□□□□□ -0.71
DDB1-219ENST00000541513 FKBP8Q14318 412 aa10.6□□□□□ -0.71
DDB1-219ENST00000541513 U3KPZ7 1027 aaPredicted RBP10.58□□□□□ -0.72
DDB1-219ENST00000541513 CAPN15O75808 1086 aa10.57□□□□□ -0.72
DDB1-219ENST00000541513 HAP1P54257 671 aaPredicted RBP10.46□□□□□ -0.73
DDB1-219ENST00000541513 TIMELESSQ9UNS1 1208 aa10.45□□□□□ -0.74
DDB1-219ENST00000541513 TPRNQ4KMQ1 711 aa10.44□□□□□ -0.74
DDB1-219ENST00000541513 VSIG10Q8N0Z9 540 aa10.44□□□□□ -0.74
DDB1-219ENST00000541513 ERICH6Q7L0X2 663 aa10.35□□□□□ -0.75
DDB1-219ENST00000541513 TULP1O00294 542 aaPredicted RBP10.32□□□□□ -0.76
DDB1-219ENST00000541513 ABCB7O75027 752 aa10.32□□□□□ -0.76
DDB1-219ENST00000541513 CHRDL2Q6WN34 429 aa10.28□□□□□ -0.76
DDB1-219ENST00000541513 ATXN8OSP0DMR3 200 aa10.27□□□□□ -0.77
DDB1-219ENST00000541513 HOMEZQ8IX15 550 aa10.27□□□□□ -0.77
DDB1-219ENST00000541513 SP7Q8TDD2 431 aaPredicted RBP10.27□□□□□ -0.77
DDB1-219ENST00000541513 TRHP20396 242 aaPredicted RBP10.25□□□□□ -0.77
DDB1-219ENST00000541513 GTF3C3Q9Y5Q9 886 aa10.21□□□□□ -0.77
DDB1-219ENST00000541513 SLC4A2P04920 1241 aa10.18□□□□□ -0.78
DDB1-219ENST00000541513 ZNF219Q9P2Y4 722 aaPredicted RBP10.16□□□□□ -0.78
DDB1-219ENST00000541513 RBM42Q9BTD8 480 aaKnown RBP10.15□□□□□ -0.78
DDB1-219ENST00000541513 KDM2AQ9Y2K7 1162 aa10.14□□□□□ -0.79
DDB1-219ENST00000541513 TMEM132AQ24JP5 1023 aa10.02□□□□□ -0.81
DDB1-219ENST00000541513 FBLN2P98095 1184 aa10.01□□□□□ -0.81
DDB1-219ENST00000541513 APLP2Q06481 763 aa10.01□□□□□ -0.81
DDB1-219ENST00000541513 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10□□□□□ -0.81
DDB1-219ENST00000541513 HNRNPUL2Q1KMD3 747 aaKnown RBP10□□□□□ -0.81
DDB1-219ENST00000541513 RANGAP1P46060 587 aaPredicted RBP9.99□□□□□ -0.81
DDB1-219ENST00000541513 DCAF8L2P0C7V8 631 aa9.98□□□□□ -0.81
DDB1-219ENST00000541513 MYCNP04198 464 aaPredicted RBP9.97□□□□□ -0.81
DDB1-219ENST00000541513 FBXO3Q9UK99 471 aa9.97□□□□□ -0.81
DDB1-219ENST00000541513 BBXQ8WY36 941 aaPredicted RBP9.94□□□□□ -0.82
DDB1-219ENST00000541513 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.94□□□□□ -0.82
DDB1-219ENST00000541513 SAMD1Q6SPF0 538 aaPredicted RBP9.93□□□□□ -0.82
DDB1-219ENST00000541513 PIP4P2Q8N4L2 257 aa9.91□□□□□ -0.82
DDB1-219ENST00000541513 C14orf37Q86TY3 774 aa9.88□□□□□ -0.83
DDB1-219ENST00000541513 PKD2Q13563 968 aa9.87□□□□□ -0.83
DDB1-219ENST00000541513 HAX1O00165 279 aa9.86□□□□□ -0.83
DDB1-219ENST00000541513 POLA2Q14181 598 aa9.84□□□□□ -0.83
DDB1-219ENST00000541513 EVX2Q03828 476 aa9.83□□□□□ -0.84
DDB1-219ENST00000541513 PAXIP1Q6ZW49 1069 aaPredicted RBP9.83□□□□□ -0.84
DDB1-219ENST00000541513 PODXL2Q9NZ53 605 aa9.83□□□□□ -0.84
DDB1-219ENST00000541513 NBR1Q14596 966 aa9.82□□□□□ -0.84
DDB1-219ENST00000541513 AKT1S1Q96B36 256 aa9.81□□□□□ -0.84
DDB1-219ENST00000541513 DNAJC5Q9H3Z4 198 aa9.81□□□□□ -0.84
DDB1-219ENST00000541513 VASPP50552 380 aaPredicted RBP9.8□□□□□ -0.84
DDB1-219ENST00000541513 REM2Q8IYK8 340 aaPredicted RBP9.77□□□□□ -0.85
DDB1-219ENST00000541513 CFAP44Q96MT7 982 aa9.77□□□□□ -0.85
DDB1-219ENST00000541513 IFNLR1Q8IU57 520 aaPredicted RBP9.74□□□□□ -0.85
DDB1-219ENST00000541513 TSHZ2Q9NRE2 1034 aa9.74□□□□□ -0.85
DDB1-219ENST00000541513 NPM1P06748 294 aaKnown RBP eCLIP9.73□□□□□ -0.85
DDB1-219ENST00000541513 FXR2P51116 673 aaKnown RBP eCLIP9.73□□□□□ -0.858e-9■■■□□ 18.8
DDB1-219ENST00000541513 SPRYD3Q8NCJ5 442 aa9.7□□□□□ -0.86
DDB1-219ENST00000541513 PITPNM1O00562 1244 aa9.69□□□□□ -0.86
DDB1-219ENST00000541513 PROM2Q8N271 834 aa9.69□□□□□ -0.86
DDB1-219ENST00000541513 CCDC180Q9P1Z9 1646 aa9.64□□□□□ -0.87
DDB1-219ENST00000541513 ATF5Q9Y2D1 282 aaPredicted RBP9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 224.8 ms