RNA–Protein interactions for RNA: ENST00000512656.1

USP46-208, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 3

Gene USP46, Length 467 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-208ENST00000512656 SLX4Q8IY92 1834 aa9.41□□□□□ -0.9
USP46-208ENST00000512656 MOXD2PA6NHM9 499 aa9.41□□□□□ -0.9
USP46-208ENST00000512656 POTECB2RU33 542 aa9.41□□□□□ -0.9
USP46-208ENST00000512656 DDNO94850 711 aaPredicted RBP9.41□□□□□ -0.9
USP46-208ENST00000512656 MYL6BP14649 208 aa9.41□□□□□ -0.9
USP46-208ENST00000512656 RIPK4P57078 832 aa9.41□□□□□ -0.9
USP46-208ENST00000512656 PARP9Q8IXQ6 854 aa9.41□□□□□ -0.9
USP46-208ENST00000512656 RPGRQ92834 1020 aaKnown RBP9.41□□□□□ -0.9
USP46-208ENST00000512656 THUMPD2Q9BTF0 503 aaKnown RBP9.41□□□□□ -0.9
USP46-208ENST00000512656 MS4A1P11836 297 aa9.4□□□□□ -0.9
USP46-208ENST00000512656 PTPRNQ16849 979 aa9.4□□□□□ -0.9
USP46-208ENST00000512656 CRY2Q49AN0 593 aa9.4□□□□□ -0.9
USP46-208ENST00000512656 PARP10Q53GL7 1025 aa9.4□□□□□ -0.9
USP46-208ENST00000512656 TTLL7Q6ZT98 887 aa9.4□□□□□ -0.9
USP46-208ENST00000512656 PPP1R42Q7Z4L9 355 aa9.4□□□□□ -0.9
USP46-208ENST00000512656 JDP2Q8WYK2 163 aa9.4□□□□□ -0.9
USP46-208ENST00000512656 MRGPRX2Q96LB1 330 aa9.4□□□□□ -0.9
USP46-208ENST00000512656 PSMD1Q99460 953 aa9.4□□□□□ -0.9
USP46-208ENST00000512656 TMX4Q9H1E5 349 aaPredicted RBP9.4□□□□□ -0.9
USP46-208ENST00000512656 ZBTB3Q9H5J0 574 aa9.4□□□□□ -0.9
USP46-208ENST00000512656 ZNF277Q9NRM2 450 aaPredicted RBP9.4□□□□□ -0.9
USP46-208ENST00000512656 CCDC88AQ3V6T2 1871 aa9.4□□□□□ -0.91
USP46-208ENST00000512656 LAMB4A4D0S4 1761 aa9.4□□□□□ -0.91
USP46-208ENST00000512656 DICER1Q9UPY3 1922 aaKnown RBP9.39□□□□□ -0.91
USP46-208ENST00000512656 AXIN1O15169 862 aa9.39□□□□□ -0.91
USP46-208ENST00000512656 ST8SIA5O15466 376 aa9.39□□□□□ -0.91
USP46-208ENST00000512656 GPTP24298 496 aa9.39□□□□□ -0.91
USP46-208ENST00000512656 HOXA10P31260 410 aaPredicted RBP9.39□□□□□ -0.91
USP46-208ENST00000512656 IARSP41252 1262 aaKnown RBP9.39□□□□□ -0.91
USP46-208ENST00000512656 MTMR2Q13614 643 aa9.39□□□□□ -0.91
USP46-208ENST00000512656 LDHDQ86WU2 507 aa9.39□□□□□ -0.91
USP46-208ENST00000512656 SYNE4Q8N205 404 aa9.39□□□□□ -0.91
USP46-208ENST00000512656 RBM17Q96I25 401 aaKnown RBP9.39□□□□□ -0.91
USP46-208ENST00000512656 ARFGEF2Q9Y6D5 1785 aa9.39□□□□□ -0.91
USP46-208ENST00000512656 RIC1Q4ADV7 1423 aa9.39□□□□□ -0.91
USP46-208ENST00000512656 RNF123Q5XPI4 1314 aa9.38□□□□□ -0.91
USP46-208ENST00000512656 KDM3BQ7LBC6 1761 aa9.38□□□□□ -0.91
USP46-208ENST00000512656 CCNYL3P0C7X3 344 aa9.38□□□□□ -0.91
USP46-208ENST00000512656 SMPD1P17405 629 aa9.38□□□□□ -0.91
USP46-208ENST00000512656 NDUFV2P19404 249 aa9.38□□□□□ -0.91
USP46-208ENST00000512656 EIF2S2P20042 333 aaKnown RBP9.38□□□□□ -0.91
USP46-208ENST00000512656 TMPOP42166 694 aaKnown RBP9.38□□□□□ -0.91
USP46-208ENST00000512656 SKOR1P84550 965 aa9.38□□□□□ -0.91
USP46-208ENST00000512656 HSP90AB3PQ58FF7 597 aa9.38□□□□□ -0.91
USP46-208ENST00000512656 ZNF34Q8IZ26 560 aa9.38□□□□□ -0.91
USP46-208ENST00000512656 NLRP3Q96P20 1036 aa9.38□□□□□ -0.91
USP46-208ENST00000512656 CRAMP1Q96RY5 1269 aa9.38□□□□□ -0.91
USP46-208ENST00000512656 TBC1D2Q9BYX2 928 aa9.38□□□□□ -0.91
USP46-208ENST00000512656 TAF1DQ9H5J8 278 aaPredicted RBP9.38□□□□□ -0.91
USP46-208ENST00000512656 HACL1Q9UJ83 578 aa9.38□□□□□ -0.91
USP46-208ENST00000512656 ABCC12Q96J65 1359 aa9.37□□□□□ -0.91
USP46-208ENST00000512656 UBN2Q6ZU65 1347 aa9.37□□□□□ -0.91
USP46-208ENST00000512656 MYBBP1AQ9BQG0 1328 aaKnown RBP9.37□□□□□ -0.91
USP46-208ENST00000512656 FZD9O00144 591 aa9.37□□□□□ -0.91
USP46-208ENST00000512656 NTSR2O95665 410 aa9.37□□□□□ -0.91
USP46-208ENST00000512656 EIF6P56537 245 aaKnown RBP9.37□□□□□ -0.91
USP46-208ENST00000512656 WDR43Q15061 677 aaKnown RBP eCLIP9.37□□□□□ -0.91
USP46-208ENST00000512656 EAPPQ56P03 285 aaPredicted RBP9.37□□□□□ -0.91
USP46-208ENST00000512656 SUSD4Q5VX71 490 aa9.37□□□□□ -0.91
USP46-208ENST00000512656 OLFM4Q6UX06 510 aa9.37□□□□□ -0.91
USP46-208ENST00000512656 PNMA8AQ86V59 439 aaPredicted RBP9.37□□□□□ -0.91
USP46-208ENST00000512656 GPC2Q8N158 579 aa9.37□□□□□ -0.91
USP46-208ENST00000512656 UTP14AQ9BVJ6 771 aaKnown RBP9.37□□□□□ -0.91
USP46-208ENST00000512656 EVA1BQ9NVM1 165 aa9.37□□□□□ -0.91
USP46-208ENST00000512656 DLG5Q8TDM6 1919 aa9.37□□□□□ -0.91
USP46-208ENST00000512656 ZNF541Q9H0D2 1346 aa9.36□□□□□ -0.91
USP46-208ENST00000512656 SPTLC1O15269 473 aa9.36□□□□□ -0.91
USP46-208ENST00000512656 EPHX2P34913 555 aa9.36□□□□□ -0.91
USP46-208ENST00000512656 RSBN1LQ6PCB5 846 aaPredicted RBP9.36□□□□□ -0.91
USP46-208ENST00000512656 LARGE2Q8N3Y3 721 aa9.36□□□□□ -0.91
USP46-208ENST00000512656 PRR7Q8TB68 274 aa9.36□□□□□ -0.91
USP46-208ENST00000512656 ZNF775Q96BV0 537 aaPredicted RBP9.36□□□□□ -0.91
USP46-208ENST00000512656 RUNDC1Q96C34 613 aa9.36□□□□□ -0.91
USP46-208ENST00000512656 CACNA1SQ13698 1873 aa9.36□□□□□ -0.91
USP46-208ENST00000512656 LMOD1P29536 600 aaPredicted RBP9.35□□□□□ -0.91
USP46-208ENST00000512656 DDX10Q13206 875 aaKnown RBP9.35□□□□□ -0.91
USP46-208ENST00000512656 NEUROD2Q15784 382 aa9.35□□□□□ -0.91
USP46-208ENST00000512656 SLC10A5Q5PT55 438 aa9.35□□□□□ -0.91
USP46-208ENST00000512656 PRPF38BQ5VTL8 546 aaKnown RBP9.35□□□□□ -0.91
USP46-208ENST00000512656 COPS6Q7L5N1 327 aa9.35□□□□□ -0.91
USP46-208ENST00000512656 VPS33BQ9H267 617 aa9.35□□□□□ -0.91
USP46-208ENST00000512656 SCN4AP35499 1836 aa9.35□□□□□ -0.91
USP46-208ENST00000512656 NUP98P52948 1817 aa9.35□□□□□ -0.91
USP46-208ENST00000512656 TMEM88BA6NKF7 163 aa9.34□□□□□ -0.91
USP46-208ENST00000512656 CHL1O00533 1208 aa9.34□□□□□ -0.91
USP46-208ENST00000512656 BBOX1O75936 387 aa9.34□□□□□ -0.91
USP46-208ENST00000512656 HOXB7P09629 217 aa9.34□□□□□ -0.91
USP46-208ENST00000512656 HSPA1AP0DMV8 641 aaKnown RBP9.34□□□□□ -0.91
USP46-208ENST00000512656 HSPA1BP0DMV9 641 aaKnown RBP9.34□□□□□ -0.91
USP46-208ENST00000512656 AIMP1Q12904 312 aaKnown RBP9.34□□□□□ -0.91
USP46-208ENST00000512656 COL13A1Q5TAT6 717 aaPredicted RBP9.34□□□□□ -0.91
USP46-208ENST00000512656 PTCRAQ6ISU1 281 aaPredicted RBP9.34□□□□□ -0.91
USP46-208ENST00000512656 LRP10Q7Z4F1 713 aa9.34□□□□□ -0.91
USP46-208ENST00000512656 NIM1KQ8IY84 436 aa9.34□□□□□ -0.91
USP46-208ENST00000512656 TNS4Q8IZW8 715 aa9.34□□□□□ -0.91
USP46-208ENST00000512656 SUPT20HQ8NEM7 779 aa9.34□□□□□ -0.91
USP46-208ENST00000512656 XAGE3Q8WTP9 111 aa9.34□□□□□ -0.91
USP46-208ENST00000512656 DDX21Q9NR30 783 aaKnown RBP eCLIP9.34□□□□□ -0.91
USP46-208ENST00000512656 GJA3Q9Y6H8 435 aa9.34□□□□□ -0.91
USP46-208ENST00000512656 PASKQ96RG2 1323 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms