RNA–Protein interactions for RNA: ENST00000510737.1

USP53-206, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 5

Gene USP53, Length 534 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-206ENST00000510737 NFIAQ12857 509 aa13.13□□□□□ -0.31
USP53-206ENST00000510737 ZNF211Q13398 564 aaPredicted RBP13.13□□□□□ -0.31
USP53-206ENST00000510737 FAM20CQ8IXL6 584 aa13.13□□□□□ -0.31
USP53-206ENST00000510737 TTC16Q8NEE8 873 aa13.13□□□□□ -0.31
USP53-206ENST00000510737 AAMPQ13685 434 aa13.12□□□□□ -0.31
USP53-206ENST00000510737 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.12□□□□□ -0.31
USP53-206ENST00000510737 SNX29Q8TEQ0 813 aa13.12□□□□□ -0.31
USP53-206ENST00000510737 BSNDQ8WZ55 320 aa13.12□□□□□ -0.31
USP53-206ENST00000510737 GSC2O15499 205 aa13.11□□□□□ -0.31
USP53-206ENST00000510737 FAM13AO94988 1023 aa13.11□□□□□ -0.31
USP53-206ENST00000510737 C19orf57Q0VDD7 668 aa13.11□□□□□ -0.31
USP53-206ENST00000510737 GJD3Q8N144 294 aa13.11□□□□□ -0.31
USP53-206ENST00000510737 RUSC1Q9BVN2 902 aa13.11□□□□□ -0.31
USP53-206ENST00000510737 RNF208Q9H0X6 261 aa13.11□□□□□ -0.31
USP53-206ENST00000510737 DLGAP3O95886 979 aa13.1□□□□□ -0.31
USP53-206ENST00000510737 BMP3P12645 472 aa13.1□□□□□ -0.31
USP53-206ENST00000510737 FKBP4Q02790 459 aaKnown RBP eCLIP13.1□□□□□ -0.31
USP53-206ENST00000510737 RNF43Q68DV7 783 aa13.1□□□□□ -0.31
USP53-206ENST00000510737 PRR19A6NJB7 356 aa13.09□□□□□ -0.31
USP53-206ENST00000510737 ANKRD34AQ69YU3 496 aa13.09□□□□□ -0.31
USP53-206ENST00000510737 BHLHE41Q9C0J9 482 aaPredicted RBP13.09□□□□□ -0.31
USP53-206ENST00000510737 METTL12A8MUP2 240 aa13.08□□□□□ -0.32
USP53-206ENST00000510737 KIAA1324LA8MWY0 1029 aaPredicted RBP13.08□□□□□ -0.32
USP53-206ENST00000510737 ADAMTS4O75173 837 aa13.08□□□□□ -0.32
USP53-206ENST00000510737 ABL1P00519 1130 aa13.08□□□□□ -0.32
USP53-206ENST00000510737 SF3B2Q13435 895 aaKnown RBP13.08□□□□□ -0.32
USP53-206ENST00000510737 IKBKEQ14164 716 aa13.08□□□□□ -0.32
USP53-206ENST00000510737 FAM83CQ9BQN1 747 aa13.08□□□□□ -0.32
USP53-206ENST00000510737 POLR3DP05423 398 aaPredicted RBP13.07□□□□□ -0.32
USP53-206ENST00000510737 EDN3P14138 238 aa13.07□□□□□ -0.32
USP53-206ENST00000510737 CLEC10AQ8IUN9 316 aa13.07□□□□□ -0.32
USP53-206ENST00000510737 ZFYVE28Q9HCC9 887 aa13.07□□□□□ -0.32
USP53-206ENST00000510737 MEGF11A6BM72 1044 aa13.06□□□□□ -0.32
USP53-206ENST00000510737 EHHADHQ08426 723 aa13.06□□□□□ -0.32
USP53-206ENST00000510737 ECM1Q16610 540 aa13.06□□□□□ -0.32
USP53-206ENST00000510737 BEND4Q6ZU67 534 aa13.06□□□□□ -0.32
USP53-206ENST00000510737 ASAP3Q8TDY4 903 aa13.06□□□□□ -0.32
USP53-206ENST00000510737 KRTAP4-12Q9BQ66 201 aa13.06□□□□□ -0.32
USP53-206ENST00000510737 DBNDD2Q9BQY9 259 aa13.06□□□□□ -0.32
USP53-206ENST00000510737 LOC100289279A0A1B0GTE1 492 aa13.05□□□□□ -0.32
USP53-206ENST00000510737 SART1O43290 800 aaKnown RBP13.05□□□□□ -0.32
USP53-206ENST00000510737 COBLO75128 1261 aa13.05□□□□□ -0.32
USP53-206ENST00000510737 ESRRAP11474 423 aaPredicted RBP13.05□□□□□ -0.32
USP53-206ENST00000510737 USP5P45974 858 aa13.05□□□□□ -0.32
USP53-206ENST00000510737 TMPRSS13Q9BYE2 586 aa13.05□□□□□ -0.32
USP53-206ENST00000510737 KCNF1Q9H3M0 494 aa13.05□□□□□ -0.32
USP53-206ENST00000510737 AMOTL2Q9Y2J4 779 aa13.05□□□□□ -0.32
USP53-206ENST00000510737 ARL4DP49703 201 aa13.03□□□□□ -0.32
USP53-206ENST00000510737 SGO2Q562F6 1265 aa13.03□□□□□ -0.32
USP53-206ENST00000510737 FDX2Q6P4F2 183 aa13.03□□□□□ -0.32
USP53-206ENST00000510737 SHKBP1Q8TBC3 707 aa13.03□□□□□ -0.32
USP53-206ENST00000510737 SPINK2P20155 84 aa13.02□□□□□ -0.33
USP53-206ENST00000510737 USP26Q9BXU7 913 aa13.02□□□□□ -0.33
USP53-206ENST00000510737 TIAF1O95411 115 aa13.01□□□□□ -0.33
USP53-206ENST00000510737 NRSN2Q9GZP1 204 aa13.01□□□□□ -0.33
USP53-206ENST00000510737 SOX17Q9H6I2 414 aaPredicted RBP13.01□□□□□ -0.33
USP53-206ENST00000510737 MTMR7Q9Y216 660 aa13□□□□□ -0.33
USP53-206ENST00000510737 HIF3AQ9Y2N7 669 aa13□□□□□ -0.33
USP53-206ENST00000510737 SHROOM4Q9ULL8 1493 aa12.99□□□□□ -0.33
USP53-206ENST00000510737 MCTP1Q6DN14 999 aa12.99□□□□□ -0.33
USP53-206ENST00000510737 SHISA5Q8N114 240 aa12.99□□□□□ -0.33
USP53-206ENST00000510737 SMG8Q8ND04 991 aaKnown RBP12.99□□□□□ -0.33
USP53-206ENST00000510737 SUGCTQ9HAC7 445 aa12.99□□□□□ -0.33
USP53-206ENST00000510737 OAS3Q9Y6K5 1087 aaKnown RBP12.99□□□□□ -0.33
USP53-206ENST00000510737 A0A1W2PP55 124 aa12.98□□□□□ -0.33
USP53-206ENST00000510737 ICMTO60725 284 aa12.98□□□□□ -0.33
USP53-206ENST00000510737 DRD2P14416 443 aa12.98□□□□□ -0.33
USP53-206ENST00000510737 MAP4P27816 1152 aaKnown RBP12.98□□□□□ -0.33
USP53-206ENST00000510737 SERPINB4P48594 390 aa12.98□□□□□ -0.33
USP53-206ENST00000510737 NUTM2GQ5VZR2 741 aa12.98□□□□□ -0.33
USP53-206ENST00000510737 USPL1Q5W0Q7 1092 aa12.98□□□□□ -0.33
USP53-206ENST00000510737 TCF12Q99081 682 aa12.98□□□□□ -0.33
USP53-206ENST00000510737 GRIA4P48058 902 aa12.97□□□□□ -0.33
USP53-206ENST00000510737 ZNF423Q2M1K9 1284 aa12.97□□□□□ -0.33
USP53-206ENST00000510737 SPRED3Q2MJR0 410 aa12.97□□□□□ -0.33
USP53-206ENST00000510737 C12orf50Q8NA57 414 aaPredicted RBP12.97□□□□□ -0.33
USP53-206ENST00000510737 MFSD14AQ96MC6 490 aa12.97□□□□□ -0.33
USP53-206ENST00000510737 EIF4G1Q04637 1599 aaKnown RBP12.97□□□□□ -0.33
USP53-206ENST00000510737 GAS2O43903 313 aaKnown RBP12.96□□□□□ -0.33
USP53-206ENST00000510737 CTSBP07858 339 aa12.96□□□□□ -0.33
USP53-206ENST00000510737 HOXA10P31260 410 aaPredicted RBP12.96□□□□□ -0.33
USP53-206ENST00000510737 GSTM4Q03013 218 aa12.96□□□□□ -0.33
USP53-206ENST00000510737 CCNJLQ8IV13 435 aa12.96□□□□□ -0.33
USP53-206ENST00000510737 GALNT12Q8IXK2 581 aa12.96□□□□□ -0.33
USP53-206ENST00000510737 EGFL7Q9UHF1 273 aa12.96□□□□□ -0.33
USP53-206ENST00000510737 WDR64B1ANS9 1081 aa12.95□□□□□ -0.34
USP53-206ENST00000510737 GP2P55259 537 aaKnown RBP12.95□□□□□ -0.34
USP53-206ENST00000510737 DTX1Q86Y01 620 aa12.95□□□□□ -0.34
USP53-206ENST00000510737 A0A096LPE4 126 aa12.94□□□□□ -0.34
USP53-206ENST00000510737 A0A1W2PPZ6 126 aa12.94□□□□□ -0.34
USP53-206ENST00000510737 ARHGAP4P98171 946 aa12.94□□□□□ -0.34
USP53-206ENST00000510737 CDPF1Q6NVV7 123 aa12.94□□□□□ -0.34
USP53-206ENST00000510737 INTS5Q6P9B9 1019 aaKnown RBP12.94□□□□□ -0.34
USP53-206ENST00000510737 KRTAP1-3Q8IUG1 177 aa12.94□□□□□ -0.34
USP53-206ENST00000510737 COL17A1Q9UMD9 1497 aaPredicted RBP12.93□□□□□ -0.34
USP53-206ENST00000510737 H3BRB1 525 aa12.93□□□□□ -0.34
USP53-206ENST00000510737 EXOSC6Q5RKV6 272 aaKnown RBP12.93□□□□□ -0.34
USP53-206ENST00000510737 C2CD4AQ8NCU7 369 aaPredicted RBP12.93□□□□□ -0.34
USP53-206ENST00000510737 TUT1Q9H6E5 874 aaKnown RBP12.93□□□□□ -0.34
USP53-206ENST00000510737 F13BP05160 661 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms