RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 CNNM1Q9NRU3 951 aa19.4■□□□□ 0.7
CCDC88B-210ENST00000494566 TTLL11Q8NHH1 800 aa19.4■□□□□ 0.7
CCDC88B-210ENST00000494566 TRMT112Q9UI30 125 aaKnown RBP19.4■□□□□ 0.7
CCDC88B-210ENST00000494566 MCAMP43121 646 aa19.39■□□□□ 0.7
CCDC88B-210ENST00000494566 KDM4FA0A1W2PPD8 638 aa19.39■□□□□ 0.69
CCDC88B-210ENST00000494566 FGAP02671 866 aa19.39■□□□□ 0.69
CCDC88B-210ENST00000494566 NKX2-3Q8TAU0 364 aa19.39■□□□□ 0.69
CCDC88B-210ENST00000494566 SCAND2PQ9GZW5 306 aaPredicted RBP19.39■□□□□ 0.69
CCDC88B-210ENST00000494566 TRMT1Q9NXH9 659 aaKnown RBP19.39■□□□□ 0.69
CCDC88B-210ENST00000494566 IRS4O14654 1257 aaPredicted RBP19.38■□□□□ 0.69
CCDC88B-210ENST00000494566 PDIA3P30101 505 aaKnown RBP19.38■□□□□ 0.69
CCDC88B-210ENST00000494566 FILIP1Q7Z7B0 1213 aa19.38■□□□□ 0.69
CCDC88B-210ENST00000494566 FAM200AQ8TCP9 573 aa19.38■□□□□ 0.69
CCDC88B-210ENST00000494566 GJB4Q9NTQ9 266 aa19.38■□□□□ 0.69
CCDC88B-210ENST00000494566 CSF1RP07333 972 aa19.38■□□□□ 0.69
CCDC88B-210ENST00000494566 CYP19A1P11511 503 aaPredicted RBP19.38■□□□□ 0.69
CCDC88B-210ENST00000494566 SMARCC2Q8TAQ2 1214 aa19.38■□□□□ 0.69
CCDC88B-210ENST00000494566 AKAP2Q9Y2D5 859 aa19.38■□□□□ 0.69
CCDC88B-210ENST00000494566 RIC1Q4ADV7 1423 aa19.38■□□□□ 0.69
CCDC88B-210ENST00000494566 ZNF165P49910 485 aa19.38■□□□□ 0.69
CCDC88B-210ENST00000494566 CHAF1AQ13111 956 aaPredicted RBP19.38■□□□□ 0.69
CCDC88B-210ENST00000494566 MAP7D2Q96T17 732 aa19.38■□□□□ 0.69
CCDC88B-210ENST00000494566 HMGB1P09429 215 aaKnown RBP19.37■□□□□ 0.69
CCDC88B-210ENST00000494566 CCDC144BQ3MJ40 725 aa19.37■□□□□ 0.69
CCDC88B-210ENST00000494566 CCDC144CPQ8IYA2 1237 aa19.37■□□□□ 0.69
CCDC88B-210ENST00000494566 CCDC94Q9BW85 323 aaPredicted RBP19.37■□□□□ 0.69
CCDC88B-210ENST00000494566 RIPOR2Q9Y4F9 1068 aa19.37■□□□□ 0.69
CCDC88B-210ENST00000494566 ITGB4P16144 1822 aa19.37■□□□□ 0.69
CCDC88B-210ENST00000494566 ELP1O95163 1332 aa19.37■□□□□ 0.69
CCDC88B-210ENST00000494566 ACSBG1Q96GR2 724 aa19.37■□□□□ 0.69
CCDC88B-210ENST00000494566 IDH1O75874 414 aaKnown RBP19.36■□□□□ 0.69
CCDC88B-210ENST00000494566 CTSWP56202 376 aa19.36■□□□□ 0.69
CCDC88B-210ENST00000494566 TRIM28Q13263 835 aaKnown RBP19.36■□□□□ 0.69
CCDC88B-210ENST00000494566 PDCL2Q8N4E4 241 aa19.36■□□□□ 0.69
CCDC88B-210ENST00000494566 GPAA1O43292 621 aa19.36■□□□□ 0.69
CCDC88B-210ENST00000494566 ISM2Q6H9L7 571 aa19.36■□□□□ 0.69
CCDC88B-210ENST00000494566 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.36■□□□□ 0.69
CCDC88B-210ENST00000494566 PRDM4Q9UKN5 801 aa19.35■□□□□ 0.69
CCDC88B-210ENST00000494566 UBN2Q6ZU65 1347 aa19.35■□□□□ 0.69
CCDC88B-210ENST00000494566 MYO5AQ9Y4I1 1855 aaKnown RBP19.35■□□□□ 0.69
CCDC88B-210ENST00000494566 PHKA1P46020 1223 aa19.35■□□□□ 0.69
CCDC88B-210ENST00000494566 DZIP3Q86Y13 1208 aaKnown RBP19.35■□□□□ 0.69
CCDC88B-210ENST00000494566 TEX13AQ9BXU3 409 aaPredicted RBP19.35■□□□□ 0.69
CCDC88B-210ENST00000494566 NWD2Q9ULI1 1742 aa19.35■□□□□ 0.69
CCDC88B-210ENST00000494566 USP27XA6NNY8 438 aa19.35■□□□□ 0.69
CCDC88B-210ENST00000494566 PTPN21Q16825 1174 aa19.35■□□□□ 0.69
CCDC88B-210ENST00000494566 C11orf57Q6ZUT1 292 aaPredicted RBP19.35■□□□□ 0.69
CCDC88B-210ENST00000494566 USP28Q96RU2 1077 aa19.35■□□□□ 0.69
CCDC88B-210ENST00000494566 CLIP2Q9UDT6 1046 aa19.35■□□□□ 0.69
CCDC88B-210ENST00000494566 ANKRD18BA2A2Z9 1011 aa19.34■□□□□ 0.69
CCDC88B-210ENST00000494566 RXRAP19793 462 aa19.34■□□□□ 0.69
CCDC88B-210ENST00000494566 ADD1P35611 737 aaKnown RBP19.34■□□□□ 0.69
CCDC88B-210ENST00000494566 TPD52L1Q16890 204 aaPredicted RBP19.34■□□□□ 0.69
CCDC88B-210ENST00000494566 SLC9C2Q5TAH2 1124 aa19.34■□□□□ 0.69
CCDC88B-210ENST00000494566 PRIMPOLQ96LW4 560 aa19.34■□□□□ 0.69
CCDC88B-210ENST00000494566 PIH1D3Q9NQM4 214 aaKnown RBP19.34■□□□□ 0.69
CCDC88B-210ENST00000494566 PRC1O43663 620 aa19.34■□□□□ 0.69
CCDC88B-210ENST00000494566 ADAMTS2O95450 1211 aa19.34■□□□□ 0.69
CCDC88B-210ENST00000494566 FDPSP14324 419 aaKnown RBP19.34■□□□□ 0.69
CCDC88B-210ENST00000494566 IMMTQ16891 758 aaKnown RBP19.34■□□□□ 0.69
CCDC88B-210ENST00000494566 CACTINQ8WUQ7 758 aaKnown RBP19.34■□□□□ 0.69
CCDC88B-210ENST00000494566 INCENPQ9NQS7 918 aa19.34■□□□□ 0.69
CCDC88B-210ENST00000494566 GOLGA6L6A8MZA4 724 aa19.33■□□□□ 0.69
CCDC88B-210ENST00000494566 EXOC5O00471 708 aa19.33■□□□□ 0.69
CCDC88B-210ENST00000494566 APPP05067 770 aa19.33■□□□□ 0.69
CCDC88B-210ENST00000494566 HMGN5P82970 282 aaKnown RBP19.33■□□□□ 0.69
CCDC88B-210ENST00000494566 APPBP2Q92624 585 aa19.33■□□□□ 0.69
CCDC88B-210ENST00000494566 PLA2G12BQ9BX93 195 aa19.33■□□□□ 0.69
CCDC88B-210ENST00000494566 AGXT2Q9BYV1 514 aa19.33■□□□□ 0.69
CCDC88B-210ENST00000494566 DNAJC5Q9H3Z4 198 aa19.33■□□□□ 0.69
CCDC88B-210ENST00000494566 KLF18A0A0U1RQI7 1052 aa19.33■□□□□ 0.68
CCDC88B-210ENST00000494566 TNNT1P13805 278 aa19.33■□□□□ 0.68
CCDC88B-210ENST00000494566 SPTLC3Q9NUV7 552 aa19.33■□□□□ 0.68
CCDC88B-210ENST00000494566 ANTXR2P58335 489 aa19.32■□□□□ 0.68
CCDC88B-210ENST00000494566 ILDR1Q86SU0 546 aaPredicted RBP19.32■□□□□ 0.68
CCDC88B-210ENST00000494566 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.32■□□□□ 0.68
CCDC88B-210ENST00000494566 BCL9O00512 1426 aa19.32■□□□□ 0.68
CCDC88B-210ENST00000494566 ZBTB9Q96C00 473 aa19.32■□□□□ 0.68
CCDC88B-210ENST00000494566 GOLPH3LQ9H4A5 285 aa19.32■□□□□ 0.68
CCDC88B-210ENST00000494566 WWC3Q9ULE0 1092 aa19.32■□□□□ 0.68
CCDC88B-210ENST00000494566 GOLGA8BA8MQT2 603 aa19.31■□□□□ 0.68
CCDC88B-210ENST00000494566 BIN1O00499 593 aa19.31■□□□□ 0.68
CCDC88B-210ENST00000494566 POLR3DP05423 398 aaPredicted RBP19.31■□□□□ 0.68
CCDC88B-210ENST00000494566 STK11IPQ8N1F8 1099 aa19.31■□□□□ 0.68
CCDC88B-210ENST00000494566 LLPHQ9BRT6 129 aaKnown RBP19.31■□□□□ 0.68
CCDC88B-210ENST00000494566 CLSTN2Q9H4D0 955 aa19.31■□□□□ 0.68
CCDC88B-210ENST00000494566 CARMIL3Q8ND23 1372 aa19.31■□□□□ 0.68
CCDC88B-210ENST00000494566 ZSCAN16Q9H4T2 348 aaPredicted RBP19.31■□□□□ 0.68
CCDC88B-210ENST00000494566 SEC31BQ9NQW1 1179 aa19.31■□□□□ 0.68
CCDC88B-210ENST00000494566 ZNF213O14771 459 aa19.31■□□□□ 0.68
CCDC88B-210ENST00000494566 ZNF75DP51815 510 aa19.31■□□□□ 0.68
CCDC88B-210ENST00000494566 ZSCAN25Q6NSZ9 544 aa19.31■□□□□ 0.68
CCDC88B-210ENST00000494566 NBPF3Q9H094 633 aa19.31■□□□□ 0.68
CCDC88B-210ENST00000494566 SALL1Q9NSC2 1324 aa19.3■□□□□ 0.68
CCDC88B-210ENST00000494566 CCDC102BQ68D86 513 aa19.3■□□□□ 0.68
CCDC88B-210ENST00000494566 VGLL2Q8N8G2 317 aa19.3■□□□□ 0.68
CCDC88B-210ENST00000494566 PDIA4P13667 645 aaKnown RBP19.3■□□□□ 0.68
CCDC88B-210ENST00000494566 CCAR1Q8IX12 1150 aaKnown RBP19.3■□□□□ 0.68
CCDC88B-210ENST00000494566 MB21D2Q8IYB1 491 aaPredicted RBP19.3■□□□□ 0.68
CCDC88B-210ENST00000494566 SENP2Q9HC62 589 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms