RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 GPAA1O43292 621 aa9.02□□□□□ -0.97
COL6A3-208ENST00000468792 ZPR1O75312 459 aa9.02□□□□□ -0.97
COL6A3-208ENST00000468792 LARGE1O95461 756 aa9.02□□□□□ -0.97
COL6A3-208ENST00000468792 F13A1P00488 732 aa9.02□□□□□ -0.97
COL6A3-208ENST00000468792 FGAP02671 866 aa9.02□□□□□ -0.97
COL6A3-208ENST00000468792 GNAT2P19087 354 aa9.02□□□□□ -0.97
COL6A3-208ENST00000468792 PHKA1P46020 1223 aa9.02□□□□□ -0.97
COL6A3-208ENST00000468792 CHRNDQ07001 517 aa9.02□□□□□ -0.97
COL6A3-208ENST00000468792 SLC27A3Q5K4L6 730 aa9.02□□□□□ -0.97
COL6A3-208ENST00000468792 SLC9C2Q5TAH2 1124 aa9.02□□□□□ -0.97
COL6A3-208ENST00000468792 TPTE2Q6XPS3 522 aa9.02□□□□□ -0.97
COL6A3-208ENST00000468792 Q6ZUG5 572 aa9.02□□□□□ -0.97
COL6A3-208ENST00000468792 STOX1Q6ZVD7 989 aa9.02□□□□□ -0.97
COL6A3-208ENST00000468792 ANKRD18AQ8IVF6 992 aa9.02□□□□□ -0.97
COL6A3-208ENST00000468792 CCDC83Q8IWF9 413 aa9.02□□□□□ -0.97
COL6A3-208ENST00000468792 SMARCC2Q8TAQ2 1214 aa9.02□□□□□ -0.97
COL6A3-208ENST00000468792 SETDB2Q96T68 719 aa9.02□□□□□ -0.97
COL6A3-208ENST00000468792 MTA3Q9BTC8 594 aa9.02□□□□□ -0.97
COL6A3-208ENST00000468792 SEC31BQ9NQW1 1179 aa9.02□□□□□ -0.97
COL6A3-208ENST00000468792 CCNL1Q9UK58 526 aaPredicted RBP9.02□□□□□ -0.97
COL6A3-208ENST00000468792 KIF3AQ9Y496 699 aa9.02□□□□□ -0.97
COL6A3-208ENST00000468792 TAF6LQ9Y6J9 622 aa9.02□□□□□ -0.97
COL6A3-208ENST00000468792 TAF1LQ8IZX4 1826 aa9.02□□□□□ -0.97
COL6A3-208ENST00000468792 DOCK2Q92608 1830 aa9.02□□□□□ -0.97
COL6A3-208ENST00000468792 AFF2P51816 1311 aa9.02□□□□□ -0.97
COL6A3-208ENST00000468792 PNPLA7Q6ZV29 1317 aa9.02□□□□□ -0.97
COL6A3-208ENST00000468792 A0A0G2JS52 829 aa9.01□□□□□ -0.97
COL6A3-208ENST00000468792 PRPF40AO75400 957 aaKnown RBP9.01□□□□□ -0.97
COL6A3-208ENST00000468792 CHGBP05060 677 aa9.01□□□□□ -0.97
COL6A3-208ENST00000468792 PDE6AP16499 860 aa9.01□□□□□ -0.97
COL6A3-208ENST00000468792 HMGN5P82970 282 aaKnown RBP9.01□□□□□ -0.97
COL6A3-208ENST00000468792 WASHC4Q2M389 1173 aa9.01□□□□□ -0.97
COL6A3-208ENST00000468792 ERFEQ4G0M1 354 aa9.01□□□□□ -0.97
COL6A3-208ENST00000468792 TBC1D9BQ66K14 1250 aa9.01□□□□□ -0.97
COL6A3-208ENST00000468792 NOL8Q76FK4 1167 aaKnown RBP9.01□□□□□ -0.97
COL6A3-208ENST00000468792 NLRP3Q96P20 1036 aa9.01□□□□□ -0.97
COL6A3-208ENST00000468792 STRBPQ96SI9 672 aaKnown RBP9.01□□□□□ -0.97
COL6A3-208ENST00000468792 ANKRD2Q9GZV1 360 aa9.01□□□□□ -0.97
COL6A3-208ENST00000468792 PUS7LQ9H0K6 701 aaKnown RBP9.01□□□□□ -0.97
COL6A3-208ENST00000468792 PIH1D3Q9NQM4 214 aaKnown RBP9.01□□□□□ -0.97
COL6A3-208ENST00000468792 GNL3LQ9NVN8 582 aaKnown RBP9.01□□□□□ -0.97
COL6A3-208ENST00000468792 ELP1O95163 1332 aa9.01□□□□□ -0.97
COL6A3-208ENST00000468792 C4BP0C0L5 1744 aa9□□□□□ -0.97
COL6A3-208ENST00000468792 PATL2C9JE40 543 aaKnown RBP9□□□□□ -0.97
COL6A3-208ENST00000468792 ZNF213O14771 459 aa9□□□□□ -0.97
COL6A3-208ENST00000468792 MCM5P33992 734 aa9□□□□□ -0.97
COL6A3-208ENST00000468792 HSPA1LP34931 641 aa9□□□□□ -0.97
COL6A3-208ENST00000468792 NT5C2P49902 561 aa9□□□□□ -0.97
COL6A3-208ENST00000468792 RASGRF1Q13972 1273 aa9□□□□□ -0.97
COL6A3-208ENST00000468792 TRAPPC3LQ5T215 181 aa9□□□□□ -0.97
COL6A3-208ENST00000468792 MEX3CQ5U5Q3 659 aaKnown RBP9□□□□□ -0.97
COL6A3-208ENST00000468792 LARP1BQ659C4 914 aaKnown RBP9□□□□□ -0.97
COL6A3-208ENST00000468792 ATL3Q6DD88 541 aa9□□□□□ -0.97
COL6A3-208ENST00000468792 FAM196AQ6ZSG2 479 aa9□□□□□ -0.97
COL6A3-208ENST00000468792 MB21D2Q8IYB1 491 aaPredicted RBP9□□□□□ -0.97
COL6A3-208ENST00000468792 SEPT12Q8IYM1 358 aa9□□□□□ -0.97
COL6A3-208ENST00000468792 NCOA7Q8NI08 942 aa9□□□□□ -0.97
COL6A3-208ENST00000468792 GPT2Q8TD30 523 aa9□□□□□ -0.97
COL6A3-208ENST00000468792 ARHGEF1Q92888 912 aaKnown RBP9□□□□□ -0.97
COL6A3-208ENST00000468792 SYAP1Q96A49 352 aaPredicted RBP9□□□□□ -0.97
COL6A3-208ENST00000468792 ZNF532Q9HCE3 1301 aa9□□□□□ -0.97
COL6A3-208ENST00000468792 A0A1B0GUL6 1792 aa8.99□□□□□ -0.97
COL6A3-208ENST00000468792 LAMA4Q16363 1823 aa8.99□□□□□ -0.97
COL6A3-208ENST00000468792 GNPATO15228 680 aa8.99□□□□□ -0.97
COL6A3-208ENST00000468792 DHX16O60231 1041 aaKnown RBP8.99□□□□□ -0.97
COL6A3-208ENST00000468792 LETM1O95202 739 aaPredicted RBP8.99□□□□□ -0.97
COL6A3-208ENST00000468792 XRCC6P12956 609 aaKnown RBP eCLIP8.99□□□□□ -0.97
COL6A3-208ENST00000468792 NCLP19338 710 aaKnown RBP8.99□□□□□ -0.97
COL6A3-208ENST00000468792 RPS8P62241 208 aaKnown RBP8.99□□□□□ -0.97
COL6A3-208ENST00000468792 UBE2HP62256 183 aa8.99□□□□□ -0.97
COL6A3-208ENST00000468792 NAA16Q6N069 864 aaPredicted RBP8.99□□□□□ -0.97
COL6A3-208ENST00000468792 PI16Q6UXB8 463 aa8.99□□□□□ -0.97
COL6A3-208ENST00000468792 PTF1AQ7RTS3 328 aa8.99□□□□□ -0.97
COL6A3-208ENST00000468792 FBXO33Q7Z6M2 555 aa8.99□□□□□ -0.97
COL6A3-208ENST00000468792 NBPF5PQ86XG9 351 aaPredicted RBP8.99□□□□□ -0.97
COL6A3-208ENST00000468792 PLCD3Q8N3E9 789 aa8.99□□□□□ -0.97
COL6A3-208ENST00000468792 NECAB1Q8N987 351 aa8.99□□□□□ -0.97
COL6A3-208ENST00000468792 ZSCAN16Q9H4T2 348 aaPredicted RBP8.99□□□□□ -0.97
COL6A3-208ENST00000468792 GRPEL1Q9HAV7 217 aa8.99□□□□□ -0.97
COL6A3-208ENST00000468792 DENND2AQ9ULE3 1009 aa8.99□□□□□ -0.97
COL6A3-208ENST00000468792 MINPP1Q9UNW1 487 aa8.99□□□□□ -0.97
COL6A3-208ENST00000468792 SALL1Q9NSC2 1324 aa8.99□□□□□ -0.97
COL6A3-208ENST00000468792 IDH1O75874 414 aaKnown RBP8.98□□□□□ -0.97
COL6A3-208ENST00000468792 PHF14O94880 888 aa8.98□□□□□ -0.97
COL6A3-208ENST00000468792 PCP11498 1178 aaKnown RBP8.98□□□□□ -0.97
COL6A3-208ENST00000468792 GTF2E1P29083 439 aaPredicted RBP8.98□□□□□ -0.97
COL6A3-208ENST00000468792 PDIA3P30101 505 aaKnown RBP8.98□□□□□ -0.97
COL6A3-208ENST00000468792 TM4SF1P30408 202 aa8.98□□□□□ -0.97
COL6A3-208ENST00000468792 RFC4P35249 363 aa8.98□□□□□ -0.97
COL6A3-208ENST00000468792 FGD1P98174 961 aa8.98□□□□□ -0.97
COL6A3-208ENST00000468792 SCRN1Q12765 414 aa8.98□□□□□ -0.97
COL6A3-208ENST00000468792 COL9A3Q14050 684 aaPredicted RBP8.98□□□□□ -0.97
COL6A3-208ENST00000468792 ZSCAN23Q3MJ62 389 aa8.98□□□□□ -0.97
COL6A3-208ENST00000468792 SLFNL1Q499Z3 407 aa8.98□□□□□ -0.97
COL6A3-208ENST00000468792 CAVIN4Q5BKX8 364 aa8.98□□□□□ -0.97
COL6A3-208ENST00000468792 GIMAP6Q6P9H5 292 aa8.98□□□□□ -0.97
COL6A3-208ENST00000468792 C15orf52Q6ZUT6 534 aaKnown RBP8.98□□□□□ -0.97
COL6A3-208ENST00000468792 USP48Q86UV5 1035 aa8.98□□□□□ -0.97
COL6A3-208ENST00000468792 HELBQ8NG08 1087 aaPredicted RBP8.98□□□□□ -0.97
COL6A3-208ENST00000468792 BRF1Q92994 677 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms