RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 BICDL1Q6ZP65 573 aa13.34□□□□□ -0.27
SYNPO-202ENST00000394243 WDR70Q9NW82 654 aa13.34□□□□□ -0.27
SYNPO-202ENST00000394243 ATP6V0A2Q9Y487 856 aa13.34□□□□□ -0.27
SYNPO-202ENST00000394243 PPFIA1Q13136 1202 aa13.34□□□□□ -0.27
SYNPO-202ENST00000394243 UAP1Q16222 522 aaPredicted RBP13.34□□□□□ -0.27
SYNPO-202ENST00000394243 SMC1BQ8NDV3 1235 aa13.34□□□□□ -0.27
SYNPO-202ENST00000394243 KIAA1524Q8TCG1 905 aa13.34□□□□□ -0.27
SYNPO-202ENST00000394243 JAKMIP2Q96AA8 810 aa13.34□□□□□ -0.27
SYNPO-202ENST00000394243 ATP2A2P16615 1042 aaKnown RBP13.34□□□□□ -0.27
SYNPO-202ENST00000394243 TPX2Q9ULW0 747 aaKnown RBP13.34□□□□□ -0.27
SYNPO-202ENST00000394243 TTF2Q9UNY4 1162 aaKnown RBP13.34□□□□□ -0.27
SYNPO-202ENST00000394243 BICDL2A1A5D9 508 aa13.34□□□□□ -0.27
SYNPO-202ENST00000394243 RTN1Q16799 776 aa13.34□□□□□ -0.27
SYNPO-202ENST00000394243 BICD1Q96G01 975 aa13.34□□□□□ -0.27
SYNPO-202ENST00000394243 TCHPQ9BT92 498 aa13.34□□□□□ -0.27
SYNPO-202ENST00000394243 MTUS1Q9ULD2 1270 aa13.34□□□□□ -0.27
SYNPO-202ENST00000394243 MAP3K2Q9Y2U5 619 aa13.34□□□□□ -0.27
SYNPO-202ENST00000394243 RABGAP1Q9Y3P9 1069 aa13.34□□□□□ -0.27
SYNPO-202ENST00000394243 NCOA1Q15788 1441 aa13.34□□□□□ -0.27
SYNPO-202ENST00000394243 NDC80O14777 642 aa13.34□□□□□ -0.27
SYNPO-202ENST00000394243 RUFY4Q6ZNE9 571 aa13.33□□□□□ -0.27
SYNPO-202ENST00000394243 ZNF365Q70YC5 407 aa13.33□□□□□ -0.27
SYNPO-202ENST00000394243 PPANQ9NQ55 473 aaKnown RBP13.33□□□□□ -0.27
SYNPO-202ENST00000394243 PHLDB2Q86SQ0 1253 aa13.33□□□□□ -0.28
SYNPO-202ENST00000394243 UTP11Q9Y3A2 253 aaKnown RBP13.33□□□□□ -0.28
SYNPO-202ENST00000394243 CADPSQ9ULU8 1353 aa13.33□□□□□ -0.28
SYNPO-202ENST00000394243 SLC4A8Q2Y0W8 1093 aa13.33□□□□□ -0.28
SYNPO-202ENST00000394243 MEIS3Q99687 375 aa13.33□□□□□ -0.28
SYNPO-202ENST00000394243 PABPN1LA6NDY0 278 aaKnown RBP13.33□□□□□ -0.28
SYNPO-202ENST00000394243 DDX27Q96GQ7 796 aaKnown RBP13.33□□□□□ -0.28
SYNPO-202ENST00000394243 TXNDC16Q9P2K2 825 aa13.33□□□□□ -0.28
SYNPO-202ENST00000394243 CETN3O15182 167 aa13.33□□□□□ -0.28
SYNPO-202ENST00000394243 CYP26C1Q6V0L0 522 aa13.33□□□□□ -0.28
SYNPO-202ENST00000394243 MRRFQ96E11 262 aaKnown RBP13.33□□□□□ -0.28
SYNPO-202ENST00000394243 FANCCQ00597 558 aa13.32□□□□□ -0.28
SYNPO-202ENST00000394243 GDAP1L1Q96MZ0 367 aa13.32□□□□□ -0.28
SYNPO-202ENST00000394243 SAMM50Q9Y512 469 aa13.32□□□□□ -0.28
SYNPO-202ENST00000394243 C9orf84Q5VXU9 1444 aa13.32□□□□□ -0.28
SYNPO-202ENST00000394243 TRIM75PA6NK02 468 aa13.32□□□□□ -0.28
SYNPO-202ENST00000394243 TTC36A6NLP5 189 aa13.32□□□□□ -0.28
SYNPO-202ENST00000394243 HSPA1LP34931 641 aa13.32□□□□□ -0.28
SYNPO-202ENST00000394243 PSMD6Q15008 389 aa13.32□□□□□ -0.28
SYNPO-202ENST00000394243 MUM1Q2TAK8 710 aa13.32□□□□□ -0.28
SYNPO-202ENST00000394243 CCDC62Q6P9F0 684 aa13.32□□□□□ -0.28
SYNPO-202ENST00000394243 EHMT1Q9H9B1 1298 aa13.32□□□□□ -0.28
SYNPO-202ENST00000394243 MBIPQ9NS73 344 aa13.32□□□□□ -0.28
SYNPO-202ENST00000394243 SSX2IPQ9Y2D8 614 aa13.32□□□□□ -0.28
SYNPO-202ENST00000394243 DDX21Q9NR30 783 aaKnown RBP eCLIP13.32□□□□□ -0.28
SYNPO-202ENST00000394243 IMPACTQ9P2X3 320 aa13.32□□□□□ -0.28
SYNPO-202ENST00000394243 SND1Q7KZF4 910 aaKnown RBP eCLIP13.32□□□□□ -0.28
SYNPO-202ENST00000394243 SDCCAG8Q86SQ7 713 aaPredicted RBP13.32□□□□□ -0.28
SYNPO-202ENST00000394243 NUF2Q9BZD4 464 aa13.32□□□□□ -0.28
SYNPO-202ENST00000394243 VPS16Q9H269 839 aa13.32□□□□□ -0.28
SYNPO-202ENST00000394243 RAD54L2Q9Y4B4 1467 aa13.32□□□□□ -0.28
SYNPO-202ENST00000394243 AFAP1Q8N556 730 aa13.32□□□□□ -0.28
SYNPO-202ENST00000394243 GPR161Q8N6U8 529 aaKnown RBP13.32□□□□□ -0.28
SYNPO-202ENST00000394243 USP26Q9BXU7 913 aa13.32□□□□□ -0.28
SYNPO-202ENST00000394243 GNGT1P63211 74 aa13.31□□□□□ -0.28
SYNPO-202ENST00000394243 ERCC6LQ2NKX8 1250 aa13.31□□□□□ -0.28
SYNPO-202ENST00000394243 SH2D4BQ5SQS7 431 aa13.31□□□□□ -0.28
SYNPO-202ENST00000394243 SEL1L2Q5TEA6 688 aa13.31□□□□□ -0.28
SYNPO-202ENST00000394243 CHST3Q7LGC8 479 aa13.31□□□□□ -0.28
SYNPO-202ENST00000394243 VPS52Q8N1B4 723 aa13.31□□□□□ -0.28
SYNPO-202ENST00000394243 EPSTI1Q96J88 318 aa13.31□□□□□ -0.28
SYNPO-202ENST00000394243 MAP3K1Q13233 1512 aa13.31□□□□□ -0.28
SYNPO-202ENST00000394243 GOLGA5Q8TBA6 731 aa13.31□□□□□ -0.28
SYNPO-202ENST00000394243 ZNF500O60304 480 aaPredicted RBP13.31□□□□□ -0.28
SYNPO-202ENST00000394243 APOBRQ0VD83 1088 aa13.31□□□□□ -0.28
SYNPO-202ENST00000394243 MCMDC2Q4G0Z9 681 aa13.31□□□□□ -0.28
SYNPO-202ENST00000394243 TAOK1Q7L7X3 1001 aa13.31□□□□□ -0.28
SYNPO-202ENST00000394243 TRIM31Q9BZY9 425 aa13.31□□□□□ -0.28
SYNPO-202ENST00000394243 CTNND2Q9UQB3 1225 aa13.31□□□□□ -0.28
SYNPO-202ENST00000394243 PDE4BQ07343 736 aa13.31□□□□□ -0.28
SYNPO-202ENST00000394243 LONRF3Q496Y0 759 aa13.31□□□□□ -0.28
SYNPO-202ENST00000394243 DBF4Q9UBU7 674 aaPredicted RBP13.31□□□□□ -0.28
SYNPO-202ENST00000394243 PTCD1O75127 700 aaKnown RBP13.31□□□□□ -0.28
SYNPO-202ENST00000394243 MCM7P33993 719 aa13.31□□□□□ -0.28
SYNPO-202ENST00000394243 RBBP5Q15291 538 aaKnown RBP13.31□□□□□ -0.28
SYNPO-202ENST00000394243 GSDMBQ8TAX9 411 aa13.31□□□□□ -0.28
SYNPO-202ENST00000394243 ELP1O95163 1332 aa13.31□□□□□ -0.28
SYNPO-202ENST00000394243 ACTN4O43707 911 aaKnown RBP13.31□□□□□ -0.28
SYNPO-202ENST00000394243 ARHGAP24Q8N264 748 aa13.31□□□□□ -0.28
SYNPO-202ENST00000394243 PTPDC1A2A3K4 754 aa13.3□□□□□ -0.28
SYNPO-202ENST00000394243 ERCC5P28715 1186 aaPredicted RBP13.3□□□□□ -0.28
SYNPO-202ENST00000394243 RUFY3Q7L099 469 aa13.3□□□□□ -0.28
SYNPO-202ENST00000394243 ANKRD44Q8N8A2 993 aa13.3□□□□□ -0.28
SYNPO-202ENST00000394243 SPATS2LQ9NUQ6 558 aaKnown RBP13.3□□□□□ -0.28
SYNPO-202ENST00000394243 STARD3NLO95772 234 aa13.3□□□□□ -0.28
SYNPO-202ENST00000394243 RLBP1P12271 317 aa13.3□□□□□ -0.28
SYNPO-202ENST00000394243 IFIT1BQ5T764 474 aaKnown RBP13.3□□□□□ -0.28
SYNPO-202ENST00000394243 MAP7Q14244 749 aa13.3□□□□□ -0.28
SYNPO-202ENST00000394243 NMIQ13287 307 aaPredicted RBP13.3□□□□□ -0.28
SYNPO-202ENST00000394243 TRIM4Q9C037 500 aa13.3□□□□□ -0.28
SYNPO-202ENST00000394243 KRT23Q9C075 422 aa13.3□□□□□ -0.28
SYNPO-202ENST00000394243 GADD45BO75293 160 aaPredicted RBP13.29□□□□□ -0.28
SYNPO-202ENST00000394243 GMNNO75496 209 aa13.29□□□□□ -0.28
SYNPO-202ENST00000394243 RPSAP08865 295 aaKnown RBP13.29□□□□□ -0.28
SYNPO-202ENST00000394243 CREB3L3Q68CJ9 461 aa13.29□□□□□ -0.28
SYNPO-202ENST00000394243 ERMNQ8TAM6 284 aa13.29□□□□□ -0.28
SYNPO-202ENST00000394243 PSMB7Q99436 277 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms