RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 TNNI3KQ59H18 835 aa16.3■□□□□ 0.2
RTF1-201ENST00000389629 ATL3Q6DD88 541 aa16.3■□□□□ 0.2
RTF1-201ENST00000389629 SEC62Q99442 399 aaKnown RBP16.3■□□□□ 0.2
RTF1-201ENST00000389629 LLPHQ9BRT6 129 aaKnown RBP16.3■□□□□ 0.2
RTF1-201ENST00000389629 PRDM4Q9UKN5 801 aa16.3■□□□□ 0.2
RTF1-201ENST00000389629 FPGT-TNNI3KV9GXZ4 949 aa16.3■□□□□ 0.2
RTF1-201ENST00000389629 MAP4K1Q92918 833 aa16.29■□□□□ 0.2
RTF1-201ENST00000389629 CWC25Q9NXE8 425 aaPredicted RBP16.29■□□□□ 0.2
RTF1-201ENST00000389629 ETF1P62495 437 aaKnown RBP16.29■□□□□ 0.2
RTF1-201ENST00000389629 IFIT5Q13325 482 aaKnown RBP16.29■□□□□ 0.2
RTF1-201ENST00000389629 SPTLC3Q9NUV7 552 aa16.29■□□□□ 0.2
RTF1-201ENST00000389629 SNRPA1P09661 255 aaKnown RBP16.29■□□□□ 0.2
RTF1-201ENST00000389629 ZNF710Q8N1W2 664 aa16.29■□□□□ 0.2
RTF1-201ENST00000389629 MRFAP1L1Q96HT8 127 aa16.29■□□□□ 0.2
RTF1-201ENST00000389629 IMPACTQ9P2X3 320 aa16.29■□□□□ 0.2
RTF1-201ENST00000389629 GUCA1BQ9UMX6 200 aa16.29■□□□□ 0.2
RTF1-201ENST00000389629 RNMTO43148 476 aaKnown RBP16.29■□□□□ 0.2
RTF1-201ENST00000389629 C11orf57Q6ZUT1 292 aaPredicted RBP16.29■□□□□ 0.2
RTF1-201ENST00000389629 DDX21Q9NR30 783 aaKnown RBP eCLIP16.29■□□□□ 0.2
RTF1-201ENST00000389629 CPSF1Q10570 1443 aaKnown RBP16.29■□□□□ 0.2
RTF1-201ENST00000389629 ELP1O95163 1332 aa16.29■□□□□ 0.2
RTF1-201ENST00000389629 RNF17Q9BXT8 1623 aaKnown RBP16.28■□□□□ 0.2
RTF1-201ENST00000389629 MINDY4BA8MYZ0 360 aa16.28■□□□□ 0.2
RTF1-201ENST00000389629 TICAM2Q86XR7 235 aa16.28■□□□□ 0.2
RTF1-201ENST00000389629 ENOX2Q16206 610 aaKnown RBP16.28■□□□□ 0.2
RTF1-201ENST00000389629 TOM1L2Q6ZVM7 507 aa16.28■□□□□ 0.2
RTF1-201ENST00000389629 ATP7BP35670 1465 aa16.28■□□□□ 0.2
RTF1-201ENST00000389629 CT47A1Q5JQC4 288 aaPredicted RBP16.28■□□□□ 0.2
RTF1-201ENST00000389629 NAA16Q6N069 864 aaPredicted RBP16.28■□□□□ 0.2
RTF1-201ENST00000389629 RNF113AO15541 343 aaKnown RBP16.28■□□□□ 0.2
RTF1-201ENST00000389629 ZNF202O95125 648 aa16.28■□□□□ 0.2
RTF1-201ENST00000389629 PAXIP1Q6ZW49 1069 aaPredicted RBP16.28■□□□□ 0.2
RTF1-201ENST00000389629 FTOQ9C0B1 505 aaKnown RBP eCLIP16.28■□□□□ 0.2
RTF1-201ENST00000389629 ZBTB43O43298 467 aa16.27■□□□□ 0.2
RTF1-201ENST00000389629 HOXB7P09629 217 aa16.27■□□□□ 0.2
RTF1-201ENST00000389629 PAFAH1B1P43034 410 aa16.27■□□□□ 0.2
RTF1-201ENST00000389629 PTPN21Q16825 1174 aa16.27■□□□□ 0.2
RTF1-201ENST00000389629 BRAPQ7Z569 592 aa16.27■□□□□ 0.2
RTF1-201ENST00000389629 CDK12Q9NYV4 1490 aaPredicted RBP16.27■□□□□ 0.2
RTF1-201ENST00000389629 GLI2P10070 1586 aa16.27■□□□□ 0.2
RTF1-201ENST00000389629 ERCC6L2Q5T890 1561 aa16.27■□□□□ 0.2
RTF1-201ENST00000389629 MPHOSPH8Q99549 860 aa16.27■□□□□ 0.2
RTF1-201ENST00000389629 STRN4Q9NRL3 753 aa16.27■□□□□ 0.2
RTF1-201ENST00000389629 LRP2BPQ9P2M1 347 aa16.27■□□□□ 0.2
RTF1-201ENST00000389629 AK9Q5TCS8 1911 aa16.27■□□□□ 0.2
RTF1-201ENST00000389629 MTX1Q13505 466 aa16.27■□□□□ 0.2
RTF1-201ENST00000389629 NFATC2IPQ8NCF5 419 aa16.27■□□□□ 0.2
RTF1-201ENST00000389629 TLR7Q9NYK1 1049 aaKnown RBP16.27■□□□□ 0.2
RTF1-201ENST00000389629 TULP4Q9NRJ4 1543 aa16.27■□□□□ 0.19
RTF1-201ENST00000389629 ZEB2O60315 1214 aa16.27■□□□□ 0.19
RTF1-201ENST00000389629 KMT5BQ4FZB7 885 aa16.27■□□□□ 0.19
RTF1-201ENST00000389629 CLCN6P51797 869 aa16.26■□□□□ 0.19
RTF1-201ENST00000389629 GDAP1L1Q96MZ0 367 aa16.26■□□□□ 0.19
RTF1-201ENST00000389629 ZCCHC11Q5TAX3 1644 aaKnown RBP16.26■□□□□ 0.19
RTF1-201ENST00000389629 PLEKHG3A1L390 1219 aa16.26■□□□□ 0.19
RTF1-201ENST00000389629 ANO1Q5XXA6 986 aa16.26■□□□□ 0.19
RTF1-201ENST00000389629 AMOTL1Q8IY63 956 aa16.26■□□□□ 0.19
RTF1-201ENST00000389629 TTC14Q96N46 770 aa16.26■□□□□ 0.19
RTF1-201ENST00000389629 KCNF1Q9H3M0 494 aa16.26■□□□□ 0.19
RTF1-201ENST00000389629 IL15P40933 162 aaPredicted RBP16.26■□□□□ 0.19
RTF1-201ENST00000389629 PIP4K2BP78356 416 aa16.26■□□□□ 0.19
RTF1-201ENST00000389629 DESI2Q9BSY9 194 aa16.26■□□□□ 0.19
RTF1-201ENST00000389629 ABCF2Q9UG63 623 aa16.26■□□□□ 0.19
RTF1-201ENST00000389629 CCDC196A0A1B0GTZ2 297 aa16.25■□□□□ 0.19
RTF1-201ENST00000389629 HLTFQ14527 1009 aaKnown RBP eCLIP16.25■□□□□ 0.19
RTF1-201ENST00000389629 MICALCLQ6ZW33 695 aa16.25■□□□□ 0.19
RTF1-201ENST00000389629 ZNF589Q86UQ0 364 aaPredicted RBP16.25■□□□□ 0.19
RTF1-201ENST00000389629 ATRIPQ8WXE1 791 aa16.25■□□□□ 0.19
RTF1-201ENST00000389629 PPP1R13BQ96KQ4 1090 aa16.25■□□□□ 0.19
RTF1-201ENST00000389629 ST7Q9NRC1 585 aa16.25■□□□□ 0.19
RTF1-201ENST00000389629 ADKP55263 362 aaKnown RBP16.25■□□□□ 0.19
RTF1-201ENST00000389629 GOLGA8FQ08AF8 430 aa16.25■□□□□ 0.19
RTF1-201ENST00000389629 GOLGA8DPQ0D2H9 430 aa16.25■□□□□ 0.19
RTF1-201ENST00000389629 LDHAL6AQ6ZMR3 332 aa16.25■□□□□ 0.19
RTF1-201ENST00000389629 CDK5RAP3Q96JB5 506 aa16.25■□□□□ 0.19
RTF1-201ENST00000389629 KIAA1468Q9P260 1216 aa16.25■□□□□ 0.19
RTF1-201ENST00000389629 CEP152O94986 1710 aa16.25■□□□□ 0.19
RTF1-201ENST00000389629 SPECC1Q5M775 1068 aa16.25■□□□□ 0.19
RTF1-201ENST00000389629 NBPF6Q5VWK0 638 aa16.25■□□□□ 0.19
RTF1-201ENST00000389629 MAATS1Q7Z4T9 603 aa16.25■□□□□ 0.19
RTF1-201ENST00000389629 IFNL2Q8IZJ0 200 aa16.25■□□□□ 0.19
RTF1-201ENST00000389629 NBPF4Q96M43 638 aa16.25■□□□□ 0.19
RTF1-201ENST00000389629 METP08581 1390 aa16.25■□□□□ 0.19
RTF1-201ENST00000389629 ARHGAP6O43182 974 aa16.24■□□□□ 0.19
RTF1-201ENST00000389629 NLRP12P59046 1061 aa16.24■□□□□ 0.19
RTF1-201ENST00000389629 SYCP1Q15431 976 aa16.24■□□□□ 0.19
RTF1-201ENST00000389629 IP6K1Q92551 441 aa16.24■□□□□ 0.19
RTF1-201ENST00000389629 GOLGA6L7A0A1B0GV03 622 aa16.24■□□□□ 0.19
RTF1-201ENST00000389629 NECTIN1Q15223 517 aa16.24■□□□□ 0.19
RTF1-201ENST00000389629 CEP57Q86XR8 500 aa16.24■□□□□ 0.19
RTF1-201ENST00000389629 LUC7LQ9NQ29 371 aaKnown RBP16.24■□□□□ 0.19
RTF1-201ENST00000389629 USP27XA6NNY8 438 aa16.24■□□□□ 0.19
RTF1-201ENST00000389629 SCRN1Q12765 414 aa16.24■□□□□ 0.19
RTF1-201ENST00000389629 FKBP15Q5T1M5 1219 aa16.24■□□□□ 0.19
RTF1-201ENST00000389629 ANKLE2Q86XL3 938 aa16.24■□□□□ 0.19
RTF1-201ENST00000389629 KBTBD3Q8NAB2 608 aa16.24■□□□□ 0.19
RTF1-201ENST00000389629 ZFYP08048 801 aaPredicted RBP16.24■□□□□ 0.19
RTF1-201ENST00000389629 GPTP24298 496 aa16.24■□□□□ 0.19
RTF1-201ENST00000389629 GYS2P54840 703 aa16.24■□□□□ 0.19
RTF1-201ENST00000389629 DHX58Q96C10 678 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 1220.2 ms