RNA–Protein interactions for RNA: ENST00000368545.7

TPM3-213, Transcript of tropomyosin 3, humanhuman

TSL 1 (best)

Gene TPM3, Length 2,147 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-213ENST00000368545 MSL1Q68DK7 614 aa11.02□□□□□ -0.64
TPM3-213ENST00000368545 MRPL50Q8N5N7 158 aaKnown RBP11.02□□□□□ -0.64
TPM3-213ENST00000368545 OCSTAMPQ9BR26 566 aa11.02□□□□□ -0.64
TPM3-213ENST00000368545 NOB1Q9ULX3 412 aaKnown RBP11.02□□□□□ -0.64
TPM3-213ENST00000368545 ABL1P00519 1130 aa11.02□□□□□ -0.65
TPM3-213ENST00000368545 HSPA8P11142 646 aaKnown RBP11.02□□□□□ -0.65
TPM3-213ENST00000368545 MRC1P22897 1456 aa11.02□□□□□ -0.65
TPM3-213ENST00000368545 MVPQ14764 893 aaKnown RBP11.02□□□□□ -0.65
TPM3-213ENST00000368545 TSGA10IPQ3SY00 556 aa11.02□□□□□ -0.65
TPM3-213ENST00000368545 PANK1Q8TE04 598 aa11.02□□□□□ -0.65
TPM3-213ENST00000368545 CHMP4AQ9BY43 222 aa11.02□□□□□ -0.65
TPM3-213ENST00000368545 RNF181Q9P0P0 153 aa11.02□□□□□ -0.65
TPM3-213ENST00000368545 PIM2Q9P1W9 311 aa11.02□□□□□ -0.65
TPM3-213ENST00000368545 ELL2O00472 640 aaPredicted RBP11.01□□□□□ -0.65
TPM3-213ENST00000368545 HSP90AB1P08238 724 aaKnown RBP11.01□□□□□ -0.65
TPM3-213ENST00000368545 POTEJP0CG39 1038 aa11.01□□□□□ -0.65
TPM3-213ENST00000368545 ZNF211Q13398 564 aaPredicted RBP11.01□□□□□ -0.65
TPM3-213ENST00000368545 KMT5BQ4FZB7 885 aa11.01□□□□□ -0.65
TPM3-213ENST00000368545 ANO2Q9NQ90 1003 aa11.01□□□□□ -0.65
TPM3-213ENST00000368545 LZTS3O60299 673 aaPredicted RBP11□□□□□ -0.65
TPM3-213ENST00000368545 CDK11BP21127 795 aaKnown RBP11□□□□□ -0.65
TPM3-213ENST00000368545 TRAF7Q6Q0C0 670 aa11□□□□□ -0.65
TPM3-213ENST00000368545 IFNL2Q8IZJ0 200 aa11□□□□□ -0.65
TPM3-213ENST00000368545 USB1Q9BQ65 265 aaKnown RBP11□□□□□ -0.65
TPM3-213ENST00000368545 BRCA1P38398 1863 aaKnown RBP11□□□□□ -0.65
TPM3-213ENST00000368545 PCDH11XQ9BZA7 1347 aa11□□□□□ -0.65
TPM3-213ENST00000368545 PCDH11YQ9BZA8 1340 aa11□□□□□ -0.65
TPM3-213ENST00000368545 H3BRB1 525 aa11□□□□□ -0.65
TPM3-213ENST00000368545 DKK1O94907 266 aa11□□□□□ -0.65
TPM3-213ENST00000368545 HOXB7P09629 217 aa11□□□□□ -0.65
TPM3-213ENST00000368545 RLBP1P12271 317 aa11□□□□□ -0.65
TPM3-213ENST00000368545 PHKG2P15735 406 aa11□□□□□ -0.65
TPM3-213ENST00000368545 EML3Q32P44 896 aa11□□□□□ -0.65
TPM3-213ENST00000368545 FBXO33Q7Z6M2 555 aa11□□□□□ -0.65
TPM3-213ENST00000368545 TUT1Q9H6E5 874 aaKnown RBP11□□□□□ -0.65
TPM3-213ENST00000368545 LGR6Q9HBX8 967 aa11□□□□□ -0.65
TPM3-213ENST00000368545 MIS18AQ9NYP9 233 aa11□□□□□ -0.65
TPM3-213ENST00000368545 DDX19BQ9UMR2 479 aa11□□□□□ -0.65
TPM3-213ENST00000368545 PCDHB9Q9Y5E1 797 aa11□□□□□ -0.65
TPM3-213ENST00000368545 KAT6BQ8WYB5 2073 aa11□□□□□ -0.65
TPM3-213ENST00000368545 PTPRCP08575 1304 aa10.99□□□□□ -0.65
TPM3-213ENST00000368545 CCDC85CA6NKD9 419 aa10.99□□□□□ -0.65
TPM3-213ENST00000368545 VAMP1P23763 118 aa10.99□□□□□ -0.65
TPM3-213ENST00000368545 DALRD3Q5D0E6 543 aaKnown RBP10.99□□□□□ -0.65
TPM3-213ENST00000368545 MPRIPQ6WCQ1 1025 aa10.99□□□□□ -0.65
TPM3-213ENST00000368545 API5Q9BZZ5 524 aaKnown RBP10.99□□□□□ -0.65
TPM3-213ENST00000368545 CHMP4BQ9H444 224 aaKnown RBP10.99□□□□□ -0.65
TPM3-213ENST00000368545 DNAAF2Q9NVR5 837 aaKnown RBP10.99□□□□□ -0.65
TPM3-213ENST00000368545 KIAA1024Q9UPX6 916 aa10.99□□□□□ -0.65
TPM3-213ENST00000368545 UBR3Q6ZT12 1888 aa10.99□□□□□ -0.65
TPM3-213ENST00000368545 THSD7BQ9C0I4 1608 aa10.99□□□□□ -0.65
TPM3-213ENST00000368545 BTBD11A6QL63 1104 aa10.99□□□□□ -0.65
TPM3-213ENST00000368545 OCLNQ16625 522 aa10.99□□□□□ -0.65
TPM3-213ENST00000368545 KRT24Q2M2I5 525 aa10.99□□□□□ -0.65
TPM3-213ENST00000368545 N4BP2Q86UW6 1770 aaPredicted RBP10.98□□□□□ -0.65
TPM3-213ENST00000368545 ACTN4O43707 911 aaKnown RBP10.98□□□□□ -0.65
TPM3-213ENST00000368545 LBX1P52954 281 aa10.98□□□□□ -0.65
TPM3-213ENST00000368545 CENPQQ7L2Z9 268 aaPredicted RBP10.98□□□□□ -0.65
TPM3-213ENST00000368545 PRIMPOLQ96LW4 560 aa10.98□□□□□ -0.65
TPM3-213ENST00000368545 ABCC4O15439 1325 aa10.98□□□□□ -0.65
TPM3-213ENST00000368545 CCDC30Q5VVM6 783 aa10.97□□□□□ -0.65
TPM3-213ENST00000368545 TAS1R3Q7RTX0 852 aa10.97□□□□□ -0.65
TPM3-213ENST00000368545 ITPRIPQ8IWB1 547 aa10.97□□□□□ -0.65
TPM3-213ENST00000368545 STK31Q9BXU1 1019 aa10.97□□□□□ -0.65
TPM3-213ENST00000368545 EGFL7Q9UHF1 273 aa10.97□□□□□ -0.65
TPM3-213ENST00000368545 TNNQ9UQP3 1299 aa10.97□□□□□ -0.65
TPM3-213ENST00000368545 C4AP0C0L4 1744 aa10.97□□□□□ -0.65
TPM3-213ENST00000368545 RECKO95980 971 aa10.97□□□□□ -0.65
TPM3-213ENST00000368545 LMNB1P20700 586 aa10.97□□□□□ -0.65
TPM3-213ENST00000368545 CTHP32929 405 aa10.97□□□□□ -0.65
TPM3-213ENST00000368545 MAP7D1Q3KQU3 841 aa10.97□□□□□ -0.65
TPM3-213ENST00000368545 ZCRB1Q8TBF4 217 aaKnown RBP10.97□□□□□ -0.65
TPM3-213ENST00000368545 DRC1Q96MC2 740 aa10.97□□□□□ -0.65
TPM3-213ENST00000368545 CXXC1Q9P0U4 656 aaPredicted RBP10.97□□□□□ -0.65
TPM3-213ENST00000368545 PDZRN3Q9UPQ7 1066 aa10.97□□□□□ -0.65
TPM3-213ENST00000368545 ZNF831Q5JPB2 1677 aa10.97□□□□□ -0.65
TPM3-213ENST00000368545 HOXB1P14653 301 aaPredicted RBP10.96□□□□□ -0.65
TPM3-213ENST00000368545 ECE1P42892 770 aa10.96□□□□□ -0.65
TPM3-213ENST00000368545 EIF4A1P60842 406 aaKnown RBP10.96□□□□□ -0.65
TPM3-213ENST00000368545 SLC52A2Q9HAB3 445 aa10.96□□□□□ -0.65
TPM3-213ENST00000368545 PALLDQ8WX93 1383 aa10.96□□□□□ -0.65
TPM3-213ENST00000368545 ZBTB7BO15156 539 aaPredicted RBP10.96□□□□□ -0.66
TPM3-213ENST00000368545 CYP27B1O15528 508 aa10.96□□□□□ -0.66
TPM3-213ENST00000368545 ICMTO60725 284 aa10.96□□□□□ -0.66
TPM3-213ENST00000368545 PTK2Q05397 1052 aa10.96□□□□□ -0.66
TPM3-213ENST00000368545 PTPRNQ16849 979 aa10.96□□□□□ -0.66
TPM3-213ENST00000368545 BRICD5Q6PL45 260 aa10.96□□□□□ -0.66
TPM3-213ENST00000368545 LARGE2Q8N3Y3 721 aa10.96□□□□□ -0.66
TPM3-213ENST00000368545 TMEM57Q8N5G2 664 aa10.96□□□□□ -0.66
TPM3-213ENST00000368545 SREK1Q8WXA9 508 aaKnown RBP10.96□□□□□ -0.66
TPM3-213ENST00000368545 SYTL4Q96C24 671 aaPredicted RBP10.96□□□□□ -0.66
TPM3-213ENST00000368545 GPSM3Q9Y4H4 160 aa10.96□□□□□ -0.66
TPM3-213ENST00000368545 PARP3Q9Y6F1 533 aa10.96□□□□□ -0.66
TPM3-213ENST00000368545 IQCA1LA6NCM1 817 aa10.95□□□□□ -0.66
TPM3-213ENST00000368545 ATP1A2P50993 1020 aa10.95□□□□□ -0.66
TPM3-213ENST00000368545 TRIM50Q86XT4 487 aa10.95□□□□□ -0.66
TPM3-213ENST00000368545 GLYCTKQ8IVS8 523 aa10.95□□□□□ -0.66
TPM3-213ENST00000368545 RASSF10A6NK89 507 aa10.94□□□□□ -0.66
TPM3-213ENST00000368545 MAPK1P28482 360 aa10.94□□□□□ -0.66
TPM3-213ENST00000368545 ECM1Q16610 540 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms