RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 CARD10Q9BWT7 1032 aa13.28□□□□□ -0.28
SYNE1-204ENST00000367248 IVNS1ABPQ9Y6Y0 642 aa13.28□□□□□ -0.28
SYNE1-204ENST00000367248 BIN1O00499 593 aa13.28□□□□□ -0.28
SYNE1-204ENST00000367248 CCDC112Q8NEF3 446 aa13.28□□□□□ -0.28
SYNE1-204ENST00000367248 RXRAP19793 462 aa13.28□□□□□ -0.28
SYNE1-204ENST00000367248 ZNF397Q8NF99 534 aaPredicted RBP13.28□□□□□ -0.28
SYNE1-204ENST00000367248 PNMA6EA0A0J9YXQ4 647 aa13.28□□□□□ -0.28
SYNE1-204ENST00000367248 KANK3Q6NY19 840 aa13.28□□□□□ -0.28
SYNE1-204ENST00000367248 LRRC27Q9C0I9 530 aa13.28□□□□□ -0.28
SYNE1-204ENST00000367248 HOMER2Q9NSB8 354 aa13.28□□□□□ -0.28
SYNE1-204ENST00000367248 MYOM2P54296 1465 aa13.28□□□□□ -0.28
SYNE1-204ENST00000367248 C6orf50Q9HD87 102 aa13.28□□□□□ -0.28
SYNE1-204ENST00000367248 IGSF1Q8N6C5 1336 aa13.27□□□□□ -0.28
SYNE1-204ENST00000367248 GPCPD1Q9NPB8 672 aa13.27□□□□□ -0.28
SYNE1-204ENST00000367248 CPXCR1Q8N123 301 aa13.27□□□□□ -0.28
SYNE1-204ENST00000367248 SMCR8Q8TEV9 937 aaPredicted RBP13.27□□□□□ -0.28
SYNE1-204ENST00000367248 DNAI2Q9GZS0 605 aa13.27□□□□□ -0.28
SYNE1-204ENST00000367248 BACH1O14867 736 aa13.27□□□□□ -0.29
SYNE1-204ENST00000367248 TNNT3P45378 269 aaPredicted RBP13.27□□□□□ -0.29
SYNE1-204ENST00000367248 UBE2HP62256 183 aa13.27□□□□□ -0.29
SYNE1-204ENST00000367248 SNX21Q969T3 373 aa13.27□□□□□ -0.29
SYNE1-204ENST00000367248 UIMC1Q96RL1 719 aa13.27□□□□□ -0.29
SYNE1-204ENST00000367248 CACNA2D4Q7Z3S7 1137 aa13.27□□□□□ -0.29
SYNE1-204ENST00000367248 NEURL1BA8MQ27 555 aa13.27□□□□□ -0.29
SYNE1-204ENST00000367248 AK2P54819 239 aa13.27□□□□□ -0.29
SYNE1-204ENST00000367248 RPS8P62241 208 aaKnown RBP13.27□□□□□ -0.29
SYNE1-204ENST00000367248 STXBP4Q6ZWJ1 553 aa13.27□□□□□ -0.29
SYNE1-204ENST00000367248 APPBP2Q92624 585 aa13.27□□□□□ -0.29
SYNE1-204ENST00000367248 CFAP74Q9C0B2 1584 aa13.26□□□□□ -0.29
SYNE1-204ENST00000367248 KCNG4Q8TDN1 519 aa13.26□□□□□ -0.29
SYNE1-204ENST00000367248 WDR17Q8IZU2 1322 aa13.26□□□□□ -0.29
SYNE1-204ENST00000367248 WDR66Q8TBY9 1149 aa13.26□□□□□ -0.29
SYNE1-204ENST00000367248 MAST3O60307 1309 aa13.26□□□□□ -0.29
SYNE1-204ENST00000367248 AOX1Q06278 1338 aa13.26□□□□□ -0.29
SYNE1-204ENST00000367248 CALML3P27482 149 aa13.26□□□□□ -0.29
SYNE1-204ENST00000367248 APOBRQ0VD83 1088 aa13.26□□□□□ -0.29
SYNE1-204ENST00000367248 TOP1P11387 765 aaKnown RBP13.26□□□□□ -0.29
SYNE1-204ENST00000367248 ZNF354CQ86Y25 554 aa13.26□□□□□ -0.29
SYNE1-204ENST00000367248 PRDM15P57071 1507 aaPredicted RBP13.26□□□□□ -0.29
SYNE1-204ENST00000367248 TRIM75PA6NK02 468 aa13.25□□□□□ -0.29
SYNE1-204ENST00000367248 TBCAO75347 108 aaKnown RBP13.25□□□□□ -0.29
SYNE1-204ENST00000367248 GTF2IP78347 998 aa13.25□□□□□ -0.29
SYNE1-204ENST00000367248 ERBB3P21860 1342 aa13.25□□□□□ -0.29
SYNE1-204ENST00000367248 RTL1A6NKG5 1358 aa13.25□□□□□ -0.29
SYNE1-204ENST00000367248 SPDYE3A6NKU9 549 aa13.25□□□□□ -0.29
SYNE1-204ENST00000367248 FCHSD1Q86WN1 690 aa13.25□□□□□ -0.29
SYNE1-204ENST00000367248 KBTBD3Q8NAB2 608 aa13.25□□□□□ -0.29
SYNE1-204ENST00000367248 FLAD1Q8NFF5 587 aa13.25□□□□□ -0.29
SYNE1-204ENST00000367248 TAF4BQ92750 862 aa13.25□□□□□ -0.29
SYNE1-204ENST00000367248 USP6P35125 1406 aa13.25□□□□□ -0.29
SYNE1-204ENST00000367248 PLXNC1O60486 1568 aa13.25□□□□□ -0.29
SYNE1-204ENST00000367248 DLGAP5Q15398 846 aa13.25□□□□□ -0.29
SYNE1-204ENST00000367248 CCDC40Q4G0X9 1142 aa13.25□□□□□ -0.29
SYNE1-204ENST00000367248 VPS36Q86VN1 386 aa13.25□□□□□ -0.29
SYNE1-204ENST00000367248 AATFQ9NY61 560 aaKnown RBP eCLIP13.25□□□□□ -0.29
SYNE1-204ENST00000367248 KLHL40Q2TBA0 621 aa13.25□□□□□ -0.29
SYNE1-204ENST00000367248 MKRN3Q13064 507 aaKnown RBP13.25□□□□□ -0.29
SYNE1-204ENST00000367248 STX1AQ16623 288 aa13.25□□□□□ -0.29
SYNE1-204ENST00000367248 KIAA1328Q86T90 577 aa13.25□□□□□ -0.29
SYNE1-204ENST00000367248 SEPT12Q8IYM1 358 aa13.25□□□□□ -0.29
SYNE1-204ENST00000367248 RRP36Q96EU6 259 aaKnown RBP13.25□□□□□ -0.29
SYNE1-204ENST00000367248 GPHNQ9NQX3 736 aaPredicted RBP13.25□□□□□ -0.29
SYNE1-204ENST00000367248 TTC37Q6PGP7 1564 aa13.25□□□□□ -0.29
SYNE1-204ENST00000367248 CAVIN2O95810 425 aa13.25□□□□□ -0.29
SYNE1-204ENST00000367248 MTIF2P46199 727 aaKnown RBP13.25□□□□□ -0.29
SYNE1-204ENST00000367248 ZNF165P49910 485 aa13.25□□□□□ -0.29
SYNE1-204ENST00000367248 TTLL7Q6ZT98 887 aa13.25□□□□□ -0.29
SYNE1-204ENST00000367248 FERMT2Q96AC1 680 aa13.25□□□□□ -0.29
SYNE1-204ENST00000367248 PAGR1Q9BTK6 254 aa13.25□□□□□ -0.29
SYNE1-204ENST00000367248 USP44Q9H0E7 712 aa13.25□□□□□ -0.29
SYNE1-204ENST00000367248 MROH5Q6ZUA9 1318 aa13.25□□□□□ -0.29
SYNE1-204ENST00000367248 SYKP43405 635 aa13.24□□□□□ -0.29
SYNE1-204ENST00000367248 CETN1Q12798 172 aa13.24□□□□□ -0.29
SYNE1-204ENST00000367248 SPA17Q15506 151 aa13.24□□□□□ -0.29
SYNE1-204ENST00000367248 USPL1Q5W0Q7 1092 aa13.24□□□□□ -0.29
SYNE1-204ENST00000367248 MRPS27Q92552 414 aaKnown RBP13.24□□□□□ -0.29
SYNE1-204ENST00000367248 LOC102724428A0A0B4J2F2 783 aa13.24□□□□□ -0.29
SYNE1-204ENST00000367248 PTPDC1A2A3K4 754 aa13.24□□□□□ -0.29
SYNE1-204ENST00000367248 F13A1P00488 732 aa13.24□□□□□ -0.29
SYNE1-204ENST00000367248 SIK1P57059 783 aa13.24□□□□□ -0.29
SYNE1-204ENST00000367248 CPLX3Q8WVH0 158 aa13.24□□□□□ -0.29
SYNE1-204ENST00000367248 ARMT1Q9H993 441 aa13.24□□□□□ -0.29
SYNE1-204ENST00000367248 ARHGAP31Q2M1Z3 1444 aa13.24□□□□□ -0.29
SYNE1-204ENST00000367248 USP26Q9BXU7 913 aa13.24□□□□□ -0.29
SYNE1-204ENST00000367248 CNGA1P29973 690 aa13.24□□□□□ -0.29
SYNE1-204ENST00000367248 ALDH1B1P30837 517 aa13.24□□□□□ -0.29
SYNE1-204ENST00000367248 FAM196AQ6ZSG2 479 aa13.24□□□□□ -0.29
SYNE1-204ENST00000367248 PDE6BP35913 854 aa13.24□□□□□ -0.29
SYNE1-204ENST00000367248 SCNN1DP51172 638 aa13.24□□□□□ -0.29
SYNE1-204ENST00000367248 SUPT20HQ8NEM7 779 aa13.24□□□□□ -0.29
SYNE1-204ENST00000367248 PRDM1O75626 825 aa13.24□□□□□ -0.29
SYNE1-204ENST00000367248 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.24□□□□□ -0.29
SYNE1-204ENST00000367248 CENPHQ9H3R5 247 aa13.24□□□□□ -0.29
SYNE1-204ENST00000367248 SH2D4AQ9H788 454 aa13.24□□□□□ -0.29
SYNE1-204ENST00000367248 KIAA0825Q8IV33 1275 aa13.23□□□□□ -0.29
SYNE1-204ENST00000367248 USP25Q9UHP3 1055 aa13.23□□□□□ -0.29
SYNE1-204ENST00000367248 BLMP54132 1417 aaPredicted RBP13.23□□□□□ -0.29
SYNE1-204ENST00000367248 ERLIN2O94905 339 aa13.23□□□□□ -0.29
SYNE1-204ENST00000367248 CCDC129Q6ZRS4 1044 aa13.23□□□□□ -0.29
SYNE1-204ENST00000367248 PSDA5PKW4 1024 aaPredicted RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms