RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 KIFC2Q96AC6 838 aa7.86□□□□□ -1.15
VPS39-202ENST00000348544 NBPF4Q96M43 638 aa7.86□□□□□ -1.15
VPS39-202ENST00000348544 PPP2R2CQ9Y2T4 447 aa7.86□□□□□ -1.15
VPS39-202ENST00000348544 CLIC4Q9Y696 253 aa7.86□□□□□ -1.15
VPS39-202ENST00000348544 NDUFB9Q9Y6M9 179 aa7.86□□□□□ -1.15
VPS39-202ENST00000348544 ZNF609O15014 1411 aa7.86□□□□□ -1.15
VPS39-202ENST00000348544 MAP2K7O14733 419 aa7.86□□□□□ -1.15
VPS39-202ENST00000348544 AMPHP49418 695 aa7.86□□□□□ -1.15
VPS39-202ENST00000348544 GNL2Q13823 731 aaKnown RBP7.86□□□□□ -1.15
VPS39-202ENST00000348544 NCAPD2Q15021 1401 aa7.86□□□□□ -1.15
VPS39-202ENST00000348544 LINC00301Q8NCQ3 95 aa7.86□□□□□ -1.15
VPS39-202ENST00000348544 RGS22Q8NE09 1264 aa7.86□□□□□ -1.15
VPS39-202ENST00000348544 KLHDC4Q8TBB5 520 aa7.86□□□□□ -1.15
VPS39-202ENST00000348544 SIRT1Q96EB6 747 aa7.86□□□□□ -1.15
VPS39-202ENST00000348544 SUCLG2Q96I99 432 aa7.86□□□□□ -1.15
VPS39-202ENST00000348544 AK7Q96M32 723 aa7.86□□□□□ -1.15
VPS39-202ENST00000348544 MPHOSPH8Q99549 860 aa7.86□□□□□ -1.15
VPS39-202ENST00000348544 C9orf78Q9NZ63 289 aaPredicted RBP7.86□□□□□ -1.15
VPS39-202ENST00000348544 RTEL1Q9NZ71 1219 aa7.86□□□□□ -1.15
VPS39-202ENST00000348544 CWC15Q9P013 229 aaKnown RBP7.86□□□□□ -1.15
VPS39-202ENST00000348544 SLC3A2P08195 630 aaKnown RBP7.85□□□□□ -1.15
VPS39-202ENST00000348544 FDPSP14324 419 aaKnown RBP7.85□□□□□ -1.15
VPS39-202ENST00000348544 GNG11P61952 73 aa7.85□□□□□ -1.15
VPS39-202ENST00000348544 DHX8Q14562 1220 aaKnown RBP7.85□□□□□ -1.15
VPS39-202ENST00000348544 OTUD7BQ6GQQ9 843 aa7.85□□□□□ -1.15
VPS39-202ENST00000348544 RABGGTAQ92696 567 aa7.85□□□□□ -1.15
VPS39-202ENST00000348544 DHX58Q96C10 678 aa7.85□□□□□ -1.15
VPS39-202ENST00000348544 INTS13Q9NVM9 706 aa7.85□□□□□ -1.15
VPS39-202ENST00000348544 MAP3K2Q9Y2U5 619 aa7.85□□□□□ -1.15
VPS39-202ENST00000348544 MED1Q15648 1581 aaPredicted RBP7.85□□□□□ -1.15
VPS39-202ENST00000348544 A0A0G2JLW4 131 aa7.85□□□□□ -1.15
VPS39-202ENST00000348544 IKBKBO14920 756 aa7.85□□□□□ -1.15
VPS39-202ENST00000348544 MLECQ14165 292 aa7.85□□□□□ -1.15
VPS39-202ENST00000348544 PROSER3Q2NL68 480 aa7.85□□□□□ -1.15
VPS39-202ENST00000348544 ICE2Q659A1 982 aa7.85□□□□□ -1.15
VPS39-202ENST00000348544 PAXIP1Q6ZW49 1069 aaPredicted RBP7.85□□□□□ -1.15
VPS39-202ENST00000348544 PACS2Q86VP3 889 aa7.85□□□□□ -1.15
VPS39-202ENST00000348544 FCHSD1Q86WN1 690 aa7.85□□□□□ -1.15
VPS39-202ENST00000348544 VSTM4Q8IW00 320 aa7.85□□□□□ -1.15
VPS39-202ENST00000348544 BICC1Q9H694 974 aaKnown RBP7.85□□□□□ -1.15
VPS39-202ENST00000348544 YY1AP1Q9H869 796 aa7.85□□□□□ -1.15
VPS39-202ENST00000348544 CARMIL3Q8ND23 1372 aa7.85□□□□□ -1.15
VPS39-202ENST00000348544 CEMIPQ8WUJ3 1361 aa7.85□□□□□ -1.15
VPS39-202ENST00000348544 MROH7-TTC4A0A0A0MT08 1334 aa7.85□□□□□ -1.15
VPS39-202ENST00000348544 KDM3BQ7LBC6 1761 aa7.85□□□□□ -1.15
VPS39-202ENST00000348544 N4BP1O75113 896 aaKnown RBP7.85□□□□□ -1.15
VPS39-202ENST00000348544 ZNF202O95125 648 aa7.85□□□□□ -1.15
VPS39-202ENST00000348544 UBASH3AP57075 661 aa7.85□□□□□ -1.15
VPS39-202ENST00000348544 G3BP1Q13283 466 aaKnown RBP eCLIP7.85□□□□□ -1.15
VPS39-202ENST00000348544 ZRSR1Q15695 479 aaKnown RBP7.85□□□□□ -1.15
VPS39-202ENST00000348544 TOGARAM2Q6ZUX3 1019 aa7.85□□□□□ -1.15
VPS39-202ENST00000348544 CHMP4CQ96CF2 233 aa7.85□□□□□ -1.15
VPS39-202ENST00000348544 PDE11AQ9HCR9 933 aa7.85□□□□□ -1.15
VPS39-202ENST00000348544 MRC1P22897 1456 aa7.84□□□□□ -1.15
VPS39-202ENST00000348544 CCDC151A5D8V7 595 aa7.84□□□□□ -1.15
VPS39-202ENST00000348544 ARHGAP6O43182 974 aa7.84□□□□□ -1.15
VPS39-202ENST00000348544 ZSCAN12O43309 604 aa7.84□□□□□ -1.15
VPS39-202ENST00000348544 TXLNAP40222 546 aa7.84□□□□□ -1.15
VPS39-202ENST00000348544 AXDND1Q5T1B0 1012 aaPredicted RBP7.84□□□□□ -1.15
VPS39-202ENST00000348544 USHBP1Q8N6Y0 703 aa7.84□□□□□ -1.15
VPS39-202ENST00000348544 AGXT2Q9BYV1 514 aa7.84□□□□□ -1.15
VPS39-202ENST00000348544 LGR6Q9HBX8 967 aa7.84□□□□□ -1.15
VPS39-202ENST00000348544 VPS18Q9P253 973 aa7.84□□□□□ -1.15
VPS39-202ENST00000348544 HOXB7P09629 217 aa7.84□□□□□ -1.16
VPS39-202ENST00000348544 PFKFB1P16118 471 aa7.84□□□□□ -1.16
VPS39-202ENST00000348544 EXOSC10Q01780 885 aaKnown RBP7.84□□□□□ -1.16
VPS39-202ENST00000348544 STK38Q15208 465 aa7.84□□□□□ -1.16
VPS39-202ENST00000348544 CFAP100Q494V2 611 aa7.84□□□□□ -1.16
VPS39-202ENST00000348544 BEND6Q5SZJ8 279 aaPredicted RBP7.84□□□□□ -1.16
VPS39-202ENST00000348544 DHX32Q7L7V1 743 aaKnown RBP7.84□□□□□ -1.16
VPS39-202ENST00000348544 GOLGA1Q92805 767 aa7.84□□□□□ -1.16
VPS39-202ENST00000348544 ZSWIM4Q9H7M6 989 aa7.84□□□□□ -1.16
VPS39-202ENST00000348544 ANKZF1Q9H8Y5 726 aa7.84□□□□□ -1.16
VPS39-202ENST00000348544 SUGCTQ9HAC7 445 aa7.84□□□□□ -1.16
VPS39-202ENST00000348544 PTPRUQ92729 1446 aa7.83□□□□□ -1.16
VPS39-202ENST00000348544 PIK3C2AO00443 1686 aa7.83□□□□□ -1.16
VPS39-202ENST00000348544 SERPINC1P01008 464 aa7.83□□□□□ -1.16
VPS39-202ENST00000348544 POLR3DP05423 398 aaPredicted RBP7.83□□□□□ -1.16
VPS39-202ENST00000348544 NPM1P06748 294 aaKnown RBP eCLIP7.83□□□□□ -1.16
VPS39-202ENST00000348544 TOP1P11387 765 aaKnown RBP7.83□□□□□ -1.16
VPS39-202ENST00000348544 PDIA3P30101 505 aaKnown RBP7.83□□□□□ -1.16
VPS39-202ENST00000348544 HOXC9P31274 260 aa7.83□□□□□ -1.16
VPS39-202ENST00000348544 GTF2A1P52655 376 aaPredicted RBP7.83□□□□□ -1.16
VPS39-202ENST00000348544 TBX2Q13207 712 aaPredicted RBP7.83□□□□□ -1.16
VPS39-202ENST00000348544 PNKPQ96T60 521 aa7.83□□□□□ -1.16
VPS39-202ENST00000348544 IRX2Q9BZI1 471 aaPredicted RBP7.83□□□□□ -1.16
VPS39-202ENST00000348544 GJB4Q9NTQ9 266 aa7.83□□□□□ -1.16
VPS39-202ENST00000348544 DBNLQ9UJU6 430 aaKnown RBP7.83□□□□□ -1.16
VPS39-202ENST00000348544 GRM8O00222 908 aa7.83□□□□□ -1.16
VPS39-202ENST00000348544 SPTLC2O15270 562 aa7.83□□□□□ -1.16
VPS39-202ENST00000348544 RPS6KA5O75582 802 aa7.83□□□□□ -1.16
VPS39-202ENST00000348544 WDHD1O75717 1129 aaPredicted RBP7.83□□□□□ -1.16
VPS39-202ENST00000348544 MYL5Q02045 173 aa7.83□□□□□ -1.16
VPS39-202ENST00000348544 MCM6Q14566 821 aa7.83□□□□□ -1.16
VPS39-202ENST00000348544 BRD3Q15059 726 aa7.83□□□□□ -1.16
VPS39-202ENST00000348544 SF3A1Q15459 793 aaKnown RBP7.83□□□□□ -1.16
VPS39-202ENST00000348544 CTR9Q6PD62 1173 aa7.83□□□□□ -1.16
VPS39-202ENST00000348544 CHST3Q7LGC8 479 aa7.83□□□□□ -1.16
VPS39-202ENST00000348544 KCNG4Q8TDN1 519 aa7.83□□□□□ -1.16
VPS39-202ENST00000348544 LTV1Q96GA3 475 aaPredicted RBP7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms