RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 RNF113AO15541 343 aaKnown RBP15.47■□□□□ 0.07
COL18A1-201ENST00000342220 CCT2P78371 535 aaKnown RBP15.47■□□□□ 0.07
COL18A1-201ENST00000342220 SF3B2Q13435 895 aaKnown RBP15.47■□□□□ 0.07
COL18A1-201ENST00000342220 RASGRF1Q13972 1273 aa15.47■□□□□ 0.07
COL18A1-201ENST00000342220 CAVIN4Q5BKX8 364 aa15.47■□□□□ 0.07
COL18A1-201ENST00000342220 LPIN2Q92539 896 aa15.47■□□□□ 0.07
COL18A1-201ENST00000342220 GDPD2Q9HCC8 539 aa15.47■□□□□ 0.07
COL18A1-201ENST00000342220 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.46■□□□□ 0.07
COL18A1-201ENST00000342220 HSPA4P34932 840 aa15.46■□□□□ 0.07
COL18A1-201ENST00000342220 FERMT3Q86UX7 667 aa15.46■□□□□ 0.07
COL18A1-201ENST00000342220 RBSNQ9H1K0 784 aa15.46■□□□□ 0.07
COL18A1-201ENST00000342220 INCENPQ9NQS7 918 aa15.46■□□□□ 0.07
COL18A1-201ENST00000342220 ABCC12Q96J65 1359 aa15.46■□□□□ 0.07
COL18A1-201ENST00000342220 ARMT1Q9H993 441 aa15.46■□□□□ 0.07
COL18A1-201ENST00000342220 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.45■□□□□ 0.062e-7■■■■□ 26.5
COL18A1-201ENST00000342220 NYXQ9GZU5 481 aa15.45■□□□□ 0.06
COL18A1-201ENST00000342220 ZNF532Q9HCE3 1301 aa15.45■□□□□ 0.06
COL18A1-201ENST00000342220 HMG20BQ9P0W2 317 aa15.45■□□□□ 0.06
COL18A1-201ENST00000342220 TOGARAM1Q9Y4F4 1720 aa15.45■□□□□ 0.06
COL18A1-201ENST00000342220 CIAO1O76071 339 aa15.45■□□□□ 0.06
COL18A1-201ENST00000342220 CCDC144CPQ8IYA2 1237 aa15.45■□□□□ 0.06
COL18A1-201ENST00000342220 SPATA5Q8NB90 893 aa15.45■□□□□ 0.06
COL18A1-201ENST00000342220 GPAA1O43292 621 aa15.44■□□□□ 0.06
COL18A1-201ENST00000342220 MSNP26038 577 aaKnown RBP15.44■□□□□ 0.06
COL18A1-201ENST00000342220 CCDC82Q8N4S0 544 aa15.44■□□□□ 0.06
COL18A1-201ENST00000342220 IPO4Q8TEX9 1081 aaKnown RBP15.44■□□□□ 0.06
COL18A1-201ENST00000342220 CDHR2Q9BYE9 1310 aa15.44■□□□□ 0.06
COL18A1-201ENST00000342220 RXRAP19793 462 aa15.44■□□□□ 0.06
COL18A1-201ENST00000342220 CLEC4GQ6UXB4 293 aa15.44■□□□□ 0.06
COL18A1-201ENST00000342220 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.44■□□□□ 0.06
COL18A1-201ENST00000342220 PROM2Q8N271 834 aa15.44■□□□□ 0.06
COL18A1-201ENST00000342220 BRF1Q92994 677 aa15.44■□□□□ 0.06
COL18A1-201ENST00000342220 MINPP1Q9UNW1 487 aa15.44■□□□□ 0.06
COL18A1-201ENST00000342220 SMC3Q9UQE7 1217 aa15.44■□□□□ 0.06
COL18A1-201ENST00000342220 LARGE1O95461 756 aa15.44■□□□□ 0.06
COL18A1-201ENST00000342220 CYP7A1P22680 504 aa15.44■□□□□ 0.06
COL18A1-201ENST00000342220 ST5P78524 1137 aa15.44■□□□□ 0.06
COL18A1-201ENST00000342220 EZH2Q15910 746 aaKnown RBP15.44■□□□□ 0.06
COL18A1-201ENST00000342220 GPHNQ9NQX3 736 aaPredicted RBP15.44■□□□□ 0.06
COL18A1-201ENST00000342220 TMEM63CQ9P1W3 806 aa15.44■□□□□ 0.06
COL18A1-201ENST00000342220 MAST3O60307 1309 aa15.44■□□□□ 0.06
COL18A1-201ENST00000342220 PRKAB2O43741 272 aa15.43■□□□□ 0.06
COL18A1-201ENST00000342220 OFD1O75665 1012 aa15.43■□□□□ 0.06
COL18A1-201ENST00000342220 MBD4O95243 580 aa15.43■□□□□ 0.06
COL18A1-201ENST00000342220 MMP10P09238 476 aa15.43■□□□□ 0.06
COL18A1-201ENST00000342220 TDO2P48775 406 aa15.43■□□□□ 0.06
COL18A1-201ENST00000342220 PPP4R3BQ5MIZ7 849 aa15.43■□□□□ 0.06
COL18A1-201ENST00000342220 TUBGCP6Q96RT7 1819 aa15.43■□□□□ 0.06
COL18A1-201ENST00000342220 MAP3K12Q12852 859 aa15.43■□□□□ 0.06
COL18A1-201ENST00000342220 ZNF827Q17R98 1081 aa15.43■□□□□ 0.06
COL18A1-201ENST00000342220 TXNRD3Q86VQ6 643 aa15.43■□□□□ 0.06
COL18A1-201ENST00000342220 DOT1LQ8TEK3 1739 aa15.43■□□□□ 0.06
COL18A1-201ENST00000342220 UQCRHLA0A096LP55 91 aa15.42■□□□□ 0.06
COL18A1-201ENST00000342220 UQCRHP07919 91 aa15.42■□□□□ 0.06
COL18A1-201ENST00000342220 CYP21A2P08686 494 aa15.42■□□□□ 0.06
COL18A1-201ENST00000342220 RALYLQ86SE5 291 aaKnown RBP15.42■□□□□ 0.06
COL18A1-201ENST00000342220 PDGFDQ9GZP0 370 aaPredicted RBP15.42■□□□□ 0.06
COL18A1-201ENST00000342220 GYS1P13807 737 aa15.42■□□□□ 0.06
COL18A1-201ENST00000342220 DMTNQ08495 405 aa15.42■□□□□ 0.06
COL18A1-201ENST00000342220 SDR42E1Q8WUS8 393 aa15.42■□□□□ 0.06
COL18A1-201ENST00000342220 GNL3LQ9NVN8 582 aaKnown RBP15.42■□□□□ 0.06
COL18A1-201ENST00000342220 HSPD1P10809 573 aaKnown RBP15.42■□□□□ 0.06
COL18A1-201ENST00000342220 GUCY1B3Q02153 619 aa15.42■□□□□ 0.06
COL18A1-201ENST00000342220 PRR5LQ6MZQ0 368 aa15.42■□□□□ 0.06
COL18A1-201ENST00000342220 NEK1Q96PY6 1258 aa15.42■□□□□ 0.06
COL18A1-201ENST00000342220 ZKSCAN3Q9BRR0 538 aa15.42■□□□□ 0.06
COL18A1-201ENST00000342220 PLA2G12BQ9BX93 195 aa15.42■□□□□ 0.06
COL18A1-201ENST00000342220 MROH5Q6ZUA9 1318 aa15.42■□□□□ 0.06
COL18A1-201ENST00000342220 USP42Q9H9J4 1324 aaKnown RBP15.42■□□□□ 0.06
COL18A1-201ENST00000342220 SYCE3A1L190 88 aa15.41■□□□□ 0.06
COL18A1-201ENST00000342220 UFL1O94874 794 aa15.41■□□□□ 0.06
COL18A1-201ENST00000342220 ZSCAN30Q86W11 494 aa15.41■□□□□ 0.06
COL18A1-201ENST00000342220 CNTNAP4Q9C0A0 1308 aa15.41■□□□□ 0.06
COL18A1-201ENST00000342220 DENND2AQ9ULE3 1009 aa15.41■□□□□ 0.06
COL18A1-201ENST00000342220 BRD1O95696 1058 aa15.41■□□□□ 0.06
COL18A1-201ENST00000342220 MCM2P49736 904 aa15.41■□□□□ 0.06
COL18A1-201ENST00000342220 CUL4AQ13619 759 aa15.41■□□□□ 0.06
COL18A1-201ENST00000342220 PRDM1O75626 825 aa15.41■□□□□ 0.06
COL18A1-201ENST00000342220 LRRFIP1Q32MZ4 808 aaKnown RBP15.41■□□□□ 0.06
COL18A1-201ENST00000342220 Q6ZUG5 572 aa15.41■□□□□ 0.06
COL18A1-201ENST00000342220 COL23A1Q86Y22 540 aaPredicted RBP15.41■□□□□ 0.06
COL18A1-201ENST00000342220 MAP4K1Q92918 833 aa15.41■□□□□ 0.06
COL18A1-201ENST00000342220 TMX4Q9H1E5 349 aaPredicted RBP15.41■□□□□ 0.06
COL18A1-201ENST00000342220 ZNF609O15014 1411 aa15.4■□□□□ 0.06
COL18A1-201ENST00000342220 NWD2Q9ULI1 1742 aa15.4■□□□□ 0.06
COL18A1-201ENST00000342220 PDE6AP16499 860 aa15.4■□□□□ 0.06
COL18A1-201ENST00000342220 PSMA5P28066 241 aa15.4■□□□□ 0.06
COL18A1-201ENST00000342220 NAPBQ9H115 298 aa15.4■□□□□ 0.06
COL18A1-201ENST00000342220 NCOA5Q9HCD5 579 aaKnown RBP15.4■□□□□ 0.06
COL18A1-201ENST00000342220 CEBPZQ03701 1054 aaKnown RBP15.4■□□□□ 0.06
COL18A1-201ENST00000342220 APOBRQ0VD83 1088 aa15.4■□□□□ 0.06
COL18A1-201ENST00000342220 RUFY3Q7L099 469 aa15.4■□□□□ 0.06
COL18A1-201ENST00000342220 PIBF1Q8WXW3 757 aa15.4■□□□□ 0.06
COL18A1-201ENST00000342220 ITGB4P16144 1822 aa15.39■□□□□ 0.06
COL18A1-201ENST00000342220 ZNF213O14771 459 aa15.39■□□□□ 0.05
COL18A1-201ENST00000342220 ANAPC15P60006 121 aa15.39■□□□□ 0.05
COL18A1-201ENST00000342220 TRDNQ13061 729 aa15.39■□□□□ 0.05
COL18A1-201ENST00000342220 NFXL1Q6ZNB6 911 aa15.39■□□□□ 0.05
COL18A1-201ENST00000342220 LIMCH1Q9UPQ0 1083 aa15.39■□□□□ 0.05
COL18A1-201ENST00000342220 AFDNP55196 1824 aaKnown RBP15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms