RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 IL2RBP14784 551 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 ALDH3A1P30838 453 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 ERFEQ4G0M1 354 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 PPP1R12CQ9BZL4 782 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 C14orf93Q9H972 538 aaKnown RBP3.76□□□□□ -1.81
CSMD3-202ENST00000339701 PFDN4Q9NQP4 134 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 ITGB1BP2Q9UKP3 347 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 DYNC1I1O14576 645 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 GNPATO15228 680 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 PTCD1O75127 700 aaKnown RBP3.76□□□□□ -1.81
CSMD3-202ENST00000339701 COA7Q96BR5 231 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 PRAM1Q96QH2 718 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 HTATIP2Q9BUP3 242 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 JRKLQ9Y4A0 524 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 AATKQ6ZMQ8 1374 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 NRKQ7Z2Y5 1582 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 DIP2BQ9P265 1576 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 GTPBP6O43824 516 aaPredicted RBP3.76□□□□□ -1.81
CSMD3-202ENST00000339701 DCAF15Q66K64 600 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 RAET1EQ8TD07 263 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 GFM2Q969S9 779 aaKnown RBP3.76□□□□□ -1.81
CSMD3-202ENST00000339701 NEUROD6Q96NK8 337 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 SH2D4AQ9H788 454 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 UBR1Q8IWV7 1749 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 ARHGAP24Q8N264 748 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 TSC1Q92574 1164 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 ATF5Q9Y2D1 282 aaPredicted RBP3.75□□□□□ -1.81
CSMD3-202ENST00000339701 ZFYP08048 801 aaPredicted RBP3.75□□□□□ -1.81
CSMD3-202ENST00000339701 NBPF7P0C2Y1 421 aaPredicted RBP3.75□□□□□ -1.81
CSMD3-202ENST00000339701 ATP5DP30049 168 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 ZNF530Q6P9A1 599 aaPredicted RBP3.75□□□□□ -1.81
CSMD3-202ENST00000339701 CCDC148Q8NFR7 591 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 FSD1Q9BTV5 496 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 RGPD3A6NKT7 1758 aaPredicted RBP3.75□□□□□ -1.81
CSMD3-202ENST00000339701 RGPD4Q7Z3J3 1758 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 HSPA8P11142 646 aaKnown RBP3.75□□□□□ -1.81
CSMD3-202ENST00000339701 LIG1P18858 919 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 RANBP1P43487 201 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 KRT85P78386 507 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 PPP2R5DQ14738 602 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 AKAP4Q5JQC9 854 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 ZNF804AQ7Z570 1209 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 KIRREL3Q8IZU9 778 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 CCDC12Q8WUD4 166 aaPredicted RBP3.75□□□□□ -1.81
CSMD3-202ENST00000339701 OPTNQ96CV9 577 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 NWD2Q9ULI1 1742 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 DDX60Q8IY21 1712 aaKnown RBP3.75□□□□□ -1.81
CSMD3-202ENST00000339701 GON4LQ3T8J9 2241 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 DIAPH1O60610 1272 aaKnown RBP3.75□□□□□ -1.81
CSMD3-202ENST00000339701 MAP3K11Q16584 847 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 CCDC96Q2M329 555 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 ERCC6LQ2NKX8 1250 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 CCDC30Q5VVM6 783 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 ZNF830Q96NB3 372 aaPredicted RBP3.75□□□□□ -1.81
CSMD3-202ENST00000339701 CTAGE1Q96RT6 745 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 PIM2Q9P1W9 311 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 THEGQ9P2T0 379 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 RIMBP3CA6NJZ7 1639 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 RIMBP3BA6NNM3 1639 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 RIMBP3Q9UFD9 1639 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 IFIT2P09913 472 aaKnown RBP3.75□□□□□ -1.81
CSMD3-202ENST00000339701 SMC1BQ8NDV3 1235 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 CDK5RAP3Q96JB5 506 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 AS3MTQ9HBK9 375 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 LRP2BPQ9P2M1 347 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 PNMA3Q9UL41 463 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 PTPRTO14522 1441 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 SPATA31E1Q6ZUB1 1445 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 SNX16P57768 344 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 DEUP1Q05D60 604 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 GBP6Q6ZN66 633 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 CNBD1Q8NA66 436 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 PIBF1Q8WXW3 757 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 NAP1L3Q99457 506 aaPredicted RBP3.75□□□□□ -1.81
CSMD3-202ENST00000339701 EDEM3Q9BZQ6 932 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 STIM2Q9P246 746 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 ADGRB1O14514 1584 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 LAMB4A4D0S4 1761 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 IFIT1P09914 478 aaKnown RBP3.75□□□□□ -1.81
CSMD3-202ENST00000339701 CCNA1P78396 465 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 CKAP4Q07065 602 aaKnown RBP3.75□□□□□ -1.81
CSMD3-202ENST00000339701 PPP1R2P3Q6NXS1 205 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 GLT8D2Q9H1C3 349 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 NOL7Q9UMY1 257 aaKnown RBP3.75□□□□□ -1.81
CSMD3-202ENST00000339701 ERCC6L2Q5T890 1561 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 POLR3DP05423 398 aaPredicted RBP3.75□□□□□ -1.81
CSMD3-202ENST00000339701 IRX3P78415 501 aaPredicted RBP3.75□□□□□ -1.81
CSMD3-202ENST00000339701 UVSSAQ2YD98 709 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 SPECC1Q5M775 1068 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 C1orf228Q6PIY5 440 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 IFT74Q96LB3 600 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 CCDC77Q9BR77 488 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 VCXQ9H320 206 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 MYOM1P52179 1685 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 NRXN1Q9ULB1 1477 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 KCNA6P17658 529 aa3.75□□□□□ -1.81
CSMD3-202ENST00000339701 RNF168Q8IYW5 571 aaPredicted RBP3.75□□□□□ -1.81
CSMD3-202ENST00000339701 EIF2AQ9BY44 585 aaKnown RBP3.75□□□□□ -1.81
CSMD3-202ENST00000339701 TACC1O75410 805 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 TTC39AQ5SRH9 613 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms