RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 RNF20Q5VTR2 975 aa22.03■■□□□ 1.12
USP39-201ENST00000323701 IRS2Q9Y4H2 1338 aa22.03■■□□□ 1.12
USP39-201ENST00000323701 DOCK2Q92608 1830 aa22.03■■□□□ 1.12
USP39-201ENST00000323701 MCM2P49736 904 aa22.02■■□□□ 1.12
USP39-201ENST00000323701 RPGRQ92834 1020 aaKnown RBP22.02■■□□□ 1.12
USP39-201ENST00000323701 CYP46A1Q9Y6A2 500 aa22.02■■□□□ 1.12
USP39-201ENST00000323701 LARGE1O95461 756 aa22.02■■□□□ 1.12
USP39-201ENST00000323701 PKP1Q13835 747 aa22.02■■□□□ 1.12
USP39-201ENST00000323701 UBE3CQ15386 1083 aa22.02■■□□□ 1.12
USP39-201ENST00000323701 LRRFIP1Q32MZ4 808 aaKnown RBP22.02■■□□□ 1.12
USP39-201ENST00000323701 FBXO33Q7Z6M2 555 aa22.02■■□□□ 1.12
USP39-201ENST00000323701 NLGN1Q8N2Q7 840 aa22.02■■□□□ 1.12
USP39-201ENST00000323701 PDRG1Q9NUG6 133 aa22.02■■□□□ 1.12
USP39-201ENST00000323701 CUL4AQ13619 759 aa22.01■■□□□ 1.11
USP39-201ENST00000323701 MAGEB6Q8N7X4 407 aa22.01■■□□□ 1.11
USP39-201ENST00000323701 GPR101Q96P66 508 aaPredicted RBP22.01■■□□□ 1.11
USP39-201ENST00000323701 ANKRD2Q9GZV1 360 aa22.01■■□□□ 1.11
USP39-201ENST00000323701 ANKRD31Q8N7Z5 1873 aa22.01■■□□□ 1.11
USP39-201ENST00000323701 RGPD3A6NKT7 1758 aaPredicted RBP22■■□□□ 1.11
USP39-201ENST00000323701 RGPD4Q7Z3J3 1758 aa22■■□□□ 1.11
USP39-201ENST00000323701 KLRG2A4D1S0 409 aaPredicted RBP22■■□□□ 1.11
USP39-201ENST00000323701 DTNBO60941 627 aa22■■□□□ 1.11
USP39-201ENST00000323701 MMP10P09238 476 aa22■■□□□ 1.11
USP39-201ENST00000323701 CAVIN4Q5BKX8 364 aa22■■□□□ 1.11
USP39-201ENST00000323701 ZSCAN25Q6NSZ9 544 aa21.99■■□□□ 1.11
USP39-201ENST00000323701 ANKIB1Q9P2G1 1089 aa21.99■■□□□ 1.11
USP39-201ENST00000323701 FGAP02671 866 aa21.99■■□□□ 1.11
USP39-201ENST00000323701 VPS37DQ86XT2 251 aa21.99■■□□□ 1.11
USP39-201ENST00000323701 RPS6KB1P23443 525 aa21.98■■□□□ 1.11
USP39-201ENST00000323701 HMGB2P26583 209 aaKnown RBP21.98■■□□□ 1.11
USP39-201ENST00000323701 ADGRA1Q86SQ6 560 aa21.98■■□□□ 1.11
USP39-201ENST00000323701 CIZ1Q9ULV3 898 aaPredicted RBP21.98■■□□□ 1.11
USP39-201ENST00000323701 HOXA10P31260 410 aaPredicted RBP21.98■■□□□ 1.11
USP39-201ENST00000323701 GPSM2P81274 684 aa21.98■■□□□ 1.11
USP39-201ENST00000323701 MAP3K12Q12852 859 aa21.98■■□□□ 1.11
USP39-201ENST00000323701 BLOC1S2Q6QNY1 142 aa21.98■■□□□ 1.11
USP39-201ENST00000323701 ABCF2Q9UG63 623 aa21.98■■□□□ 1.11
USP39-201ENST00000323701 LIMCH1Q9UPQ0 1083 aa21.98■■□□□ 1.11
USP39-201ENST00000323701 NRXN2Q9P2S2 1712 aa21.97■■□□□ 1.11
USP39-201ENST00000323701 PSMA5P28066 241 aa21.97■■□□□ 1.11
USP39-201ENST00000323701 HAND2P61296 217 aa21.97■■□□□ 1.11
USP39-201ENST00000323701 RAB3GAP1Q15042 981 aa21.97■■□□□ 1.11
USP39-201ENST00000323701 DEFB132Q7Z7B7 95 aa21.97■■□□□ 1.11
USP39-201ENST00000323701 ZNF384Q8TF68 577 aa21.97■■□□□ 1.11
USP39-201ENST00000323701 PDGFDQ9GZP0 370 aaPredicted RBP21.97■■□□□ 1.11
USP39-201ENST00000323701 JAG2Q9Y219 1238 aa21.97■■□□□ 1.11
USP39-201ENST00000323701 HIBADHP31937 336 aaKnown RBP21.97■■□□□ 1.11
USP39-201ENST00000323701 TOB2Q14106 344 aaPredicted RBP21.97■■□□□ 1.11
USP39-201ENST00000323701 SLC15A2Q16348 729 aa21.97■■□□□ 1.11
USP39-201ENST00000323701 FLAD1Q8NFF5 587 aa21.97■■□□□ 1.11
USP39-201ENST00000323701 TNPO1Q92973 898 aaKnown RBP21.97■■□□□ 1.11
USP39-201ENST00000323701 RBM17Q96I25 401 aaKnown RBP21.97■■□□□ 1.11
USP39-201ENST00000323701 NEK1Q96PY6 1258 aa21.97■■□□□ 1.11
USP39-201ENST00000323701 GNL3LQ9NVN8 582 aaKnown RBP21.97■■□□□ 1.11
USP39-201ENST00000323701 LRP2BPQ9P2M1 347 aa21.97■■□□□ 1.11
USP39-201ENST00000323701 ST3GAL1Q11201 340 aa21.96■■□□□ 1.11
USP39-201ENST00000323701 STRBPQ96SI9 672 aaKnown RBP21.96■■□□□ 1.11
USP39-201ENST00000323701 TPCN1Q9ULQ1 816 aa21.96■■□□□ 1.11
USP39-201ENST00000323701 LAMA4Q16363 1823 aa21.95■■□□□ 1.1
USP39-201ENST00000323701 E7EWF7 191 aa21.95■■□□□ 1.1
USP39-201ENST00000323701 ME3Q16798 604 aa21.95■■□□□ 1.1
USP39-201ENST00000323701 BRIP1Q9BX63 1249 aa21.95■■□□□ 1.1
USP39-201ENST00000323701 LRRC2Q9BYS8 371 aa21.95■■□□□ 1.1
USP39-201ENST00000323701 ARMT1Q9H993 441 aa21.95■■□□□ 1.1
USP39-201ENST00000323701 NSFL1CQ9UNZ2 370 aaKnown RBP21.95■■□□□ 1.1
USP39-201ENST00000323701 XDHP47989 1333 aa21.94■■□□□ 1.1
USP39-201ENST00000323701 MBD4O95243 580 aa21.94■■□□□ 1.1
USP39-201ENST00000323701 OLFM4Q6UX06 510 aa21.94■■□□□ 1.1
USP39-201ENST00000323701 MIGA1Q8NAN2 632 aa21.94■■□□□ 1.1
USP39-201ENST00000323701 ZDHHC9Q9Y397 364 aa21.94■■□□□ 1.1
USP39-201ENST00000323701 KRT32Q14532 448 aa21.94■■□□□ 1.1
USP39-201ENST00000323701 NBPF3Q9H094 633 aa21.94■■□□□ 1.1
USP39-201ENST00000323701 DENND2AQ9ULE3 1009 aa21.94■■□□□ 1.1
USP39-201ENST00000323701 PRKAB2O43741 272 aa21.93■■□□□ 1.1
USP39-201ENST00000323701 SRGNP10124 158 aa21.93■■□□□ 1.1
USP39-201ENST00000323701 LCORLQ8N3X6 602 aa21.93■■□□□ 1.1
USP39-201ENST00000323701 NKX2-3Q8TAU0 364 aa21.93■■□□□ 1.1
USP39-201ENST00000323701 AIDAQ96BJ3 306 aa21.93■■□□□ 1.1
USP39-201ENST00000323701 CRAMP1Q96RY5 1269 aa21.93■■□□□ 1.1
USP39-201ENST00000323701 CHAF1AQ13111 956 aaPredicted RBP21.92■■□□□ 1.1
USP39-201ENST00000323701 CACNA1SQ13698 1873 aa21.92■■□□□ 1.1
USP39-201ENST00000323701 NECAB1Q8N987 351 aa21.92■■□□□ 1.1
USP39-201ENST00000323701 INTS4Q96HW7 963 aaKnown RBP21.92■■□□□ 1.1
USP39-201ENST00000323701 CWC22Q9HCG8 908 aaKnown RBP21.92■■□□□ 1.1
USP39-201ENST00000323701 EPB41L4AQ9HCS5 686 aaPredicted RBP21.92■■□□□ 1.1
USP39-201ENST00000323701 RAI14Q9P0K7 980 aa21.92■■□□□ 1.1
USP39-201ENST00000323701 LEMD3Q9Y2U8 911 aa21.92■■□□□ 1.1
USP39-201ENST00000323701 PARP3Q9Y6F1 533 aa21.92■■□□□ 1.1
USP39-201ENST00000323701 IL27Q8NEV9 243 aa21.92■■□□□ 1.1
USP39-201ENST00000323701 BBOX1O75936 387 aa21.91■■□□□ 1.1
USP39-201ENST00000323701 CHST3Q7LGC8 479 aa21.91■■□□□ 1.1
USP39-201ENST00000323701 POLLQ9UGP5 575 aa21.91■■□□□ 1.1
USP39-201ENST00000323701 COL11A2P13942 1736 aaPredicted RBP21.91■■□□□ 1.1
USP39-201ENST00000323701 APPP05067 770 aa21.91■■□□□ 1.1
USP39-201ENST00000323701 CYP7A1P22680 504 aa21.91■■□□□ 1.1
USP39-201ENST00000323701 CCDC83Q8IWF9 413 aa21.91■■□□□ 1.1
USP39-201ENST00000323701 ALDH8A1Q9H2A2 487 aaPredicted RBP21.91■■□□□ 1.1
USP39-201ENST00000323701 MYH13Q9UKX3 1938 aa21.9■■□□□ 1.1
USP39-201ENST00000323701 UFL1O94874 794 aa21.9■■□□□ 1.1
USP39-201ENST00000323701 Q6ZUG5 572 aa21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms