RNA–Protein interactions for RNA: ENST00000228251.8

YBX3-201, Transcript of Y-box binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene YBX3, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-201ENST00000228251 HSP90B1P14625 803 aaKnown RBP22.66■■□□□ 1.22
YBX3-201ENST00000228251 HELBQ8NG08 1087 aaPredicted RBP22.66■■□□□ 1.22
YBX3-201ENST00000228251 SALL1Q9NSC2 1324 aa22.65■■□□□ 1.22
YBX3-201ENST00000228251 TAF1P21675 1872 aa22.65■■□□□ 1.22
YBX3-201ENST00000228251 MB21D2Q8IYB1 491 aaPredicted RBP22.65■■□□□ 1.22
YBX3-201ENST00000228251 NSUN7Q8NE18 718 aaKnown RBP22.65■■□□□ 1.22
YBX3-201ENST00000228251 ZNF274Q96GC6 653 aaPredicted RBP22.65■■□□□ 1.22
YBX3-201ENST00000228251 ZNF652Q9Y2D9 606 aa22.65■■□□□ 1.22
YBX3-201ENST00000228251 ELP1O95163 1332 aa22.64■■□□□ 1.22
YBX3-201ENST00000228251 SBF2Q86WG5 1849 aa22.64■■□□□ 1.22
YBX3-201ENST00000228251 CHD4Q14839 1912 aa22.64■■□□□ 1.22
YBX3-201ENST00000228251 FIBPO43427 364 aa22.64■■□□□ 1.22
YBX3-201ENST00000228251 SLC5A1P13866 664 aa22.64■■□□□ 1.22
YBX3-201ENST00000228251 APOBRQ0VD83 1088 aa22.64■■□□□ 1.22
YBX3-201ENST00000228251 IMMTQ16891 758 aaKnown RBP22.64■■□□□ 1.22
YBX3-201ENST00000228251 CSPP1Q1MSJ5 1256 aa22.64■■□□□ 1.22
YBX3-201ENST00000228251 FAM177BA6PVY3 158 aa22.63■■□□□ 1.21
YBX3-201ENST00000228251 PDE6AP16499 860 aa22.63■■□□□ 1.21
YBX3-201ENST00000228251 SLC9C2Q5TAH2 1124 aa22.63■■□□□ 1.21
YBX3-201ENST00000228251 NBPF3Q9H094 633 aa22.63■■□□□ 1.21
YBX3-201ENST00000228251 RTN4Q9NQC3 1192 aaKnown RBP22.63■■□□□ 1.21
YBX3-201ENST00000228251 C4AP0C0L4 1744 aa22.63■■□□□ 1.21
YBX3-201ENST00000228251 C4BP0C0L5 1744 aa22.63■■□□□ 1.21
YBX3-201ENST00000228251 CCDC173Q0VFZ6 552 aa22.63■■□□□ 1.21
YBX3-201ENST00000228251 PTF1AQ7RTS3 328 aa22.63■■□□□ 1.21
YBX3-201ENST00000228251 KLHL34Q8N239 644 aa22.63■■□□□ 1.21
YBX3-201ENST00000228251 NGLY1Q96IV0 654 aa22.63■■□□□ 1.21
YBX3-201ENST00000228251 C8orf37Q96NL8 207 aa22.63■■□□□ 1.21
YBX3-201ENST00000228251 WDR19Q8NEZ3 1342 aa22.62■■□□□ 1.21
YBX3-201ENST00000228251 TIAM2Q8IVF5 1701 aa22.62■■□□□ 1.21
YBX3-201ENST00000228251 SNAP23O00161 211 aa22.62■■□□□ 1.21
YBX3-201ENST00000228251 PDIA3P30101 505 aaKnown RBP22.62■■□□□ 1.21
YBX3-201ENST00000228251 RESTQ13127 1097 aa22.62■■□□□ 1.21
YBX3-201ENST00000228251 RASGRF1Q13972 1273 aa22.62■■□□□ 1.21
YBX3-201ENST00000228251 TTC6Q86TZ1 520 aa22.62■■□□□ 1.21
YBX3-201ENST00000228251 SPATA5Q8NB90 893 aa22.62■■□□□ 1.21
YBX3-201ENST00000228251 MPHOSPH8Q99549 860 aa22.62■■□□□ 1.21
YBX3-201ENST00000228251 WWC3Q9ULE0 1092 aa22.62■■□□□ 1.21
YBX3-201ENST00000228251 ZNF532Q9HCE3 1301 aa22.62■■□□□ 1.21
YBX3-201ENST00000228251 SF3B3Q15393 1217 aaKnown RBP22.61■■□□□ 1.21
YBX3-201ENST00000228251 CCDC183Q5T5S1 534 aa22.61■■□□□ 1.21
YBX3-201ENST00000228251 FERMT3Q86UX7 667 aa22.61■■□□□ 1.21
YBX3-201ENST00000228251 CERKQ8TCT0 537 aa22.61■■□□□ 1.21
YBX3-201ENST00000228251 BCL2L12Q9HB09 334 aa22.61■■□□□ 1.21
YBX3-201ENST00000228251 ZMYM6O95789 1325 aa22.61■■□□□ 1.21
YBX3-201ENST00000228251 PHF14O94880 888 aa22.61■■□□□ 1.21
YBX3-201ENST00000228251 ANTXR2P58335 489 aa22.61■■□□□ 1.21
YBX3-201ENST00000228251 HAND2P61296 217 aa22.61■■□□□ 1.21
YBX3-201ENST00000228251 KRT85P78386 507 aa22.61■■□□□ 1.21
YBX3-201ENST00000228251 RC3H1Q5TC82 1133 aaKnown RBP22.61■■□□□ 1.21
YBX3-201ENST00000228251 RRAGDQ9NQL2 400 aaPredicted RBP22.61■■□□□ 1.21
YBX3-201ENST00000228251 PDLIM2Q96JY6 352 aa22.6■■□□□ 1.21
YBX3-201ENST00000228251 IDH1O75874 414 aaKnown RBP22.59■■□□□ 1.21
YBX3-201ENST00000228251 IGHMBP2P38935 993 aaKnown RBP22.59■■□□□ 1.21
YBX3-201ENST00000228251 HMGN5P82970 282 aaKnown RBP22.59■■□□□ 1.21
YBX3-201ENST00000228251 FGD1P98174 961 aa22.59■■□□□ 1.21
YBX3-201ENST00000228251 ALX1Q15699 326 aa22.59■■□□□ 1.21
YBX3-201ENST00000228251 FAM173BQ6P4H8 233 aa22.59■■□□□ 1.21
YBX3-201ENST00000228251 C3orf67Q6ZVT6 689 aa22.59■■□□□ 1.21
YBX3-201ENST00000228251 CHRNDQ07001 517 aa22.58■■□□□ 1.21
YBX3-201ENST00000228251 SLC10A5Q5PT55 438 aa22.58■■□□□ 1.21
YBX3-201ENST00000228251 NAA16Q6N069 864 aaPredicted RBP22.58■■□□□ 1.21
YBX3-201ENST00000228251 CHST3Q7LGC8 479 aa22.58■■□□□ 1.21
YBX3-201ENST00000228251 STRBPQ96SI9 672 aaKnown RBP22.58■■□□□ 1.21
YBX3-201ENST00000228251 GPHNQ9NQX3 736 aaPredicted RBP22.58■■□□□ 1.21
YBX3-201ENST00000228251 ZNF804BA4D1E1 1349 aa22.58■■□□□ 1.21
YBX3-201ENST00000228251 PTPDC1A2A3K4 754 aa22.58■■□□□ 1.2
YBX3-201ENST00000228251 ERFEQ4G0M1 354 aa22.58■■□□□ 1.2
YBX3-201ENST00000228251 TSPY26PQ9H489 355 aa22.58■■□□□ 1.2
YBX3-201ENST00000228251 ZNF213O14771 459 aa22.57■■□□□ 1.2
YBX3-201ENST00000228251 MCM5P33992 734 aa22.57■■□□□ 1.2
YBX3-201ENST00000228251 NCOA7Q8NI08 942 aa22.57■■□□□ 1.2
YBX3-201ENST00000228251 SPATA31A6Q5VVP1 1343 aa22.57■■□□□ 1.2
YBX3-201ENST00000228251 PRC1O43663 620 aa22.56■■□□□ 1.2
YBX3-201ENST00000228251 KCNQ4P56696 695 aa22.56■■□□□ 1.2
YBX3-201ENST00000228251 TBC1D10CQ8IV04 446 aa22.56■■□□□ 1.2
YBX3-201ENST00000228251 DDX11Q96FC9 970 aa22.56■■□□□ 1.2
YBX3-201ENST00000228251 CDC5LQ99459 802 aaKnown RBP22.56■■□□□ 1.2
YBX3-201ENST00000228251 SCAND2PQ9GZW5 306 aaPredicted RBP22.56■■□□□ 1.2
YBX3-201ENST00000228251 NCOA5Q9HCD5 579 aaKnown RBP22.56■■□□□ 1.2
YBX3-201ENST00000228251 HPS5Q9UPZ3 1129 aa22.56■■□□□ 1.2
YBX3-201ENST00000228251 RPS6KA4O75676 772 aa22.55■■□□□ 1.2
YBX3-201ENST00000228251 LETM1O95202 739 aaPredicted RBP22.55■■□□□ 1.2
YBX3-201ENST00000228251 NKX2-3Q8TAU0 364 aa22.55■■□□□ 1.2
YBX3-201ENST00000228251 FUCA2Q9BTY2 467 aa22.55■■□□□ 1.2
YBX3-201ENST00000228251 ZSCAN16Q9H4T2 348 aaPredicted RBP22.55■■□□□ 1.2
YBX3-201ENST00000228251 BCAMP50895 628 aa22.55■■□□□ 1.2
YBX3-201ENST00000228251 CCT2P78371 535 aaKnown RBP22.55■■□□□ 1.2
YBX3-201ENST00000228251 LEO1Q8WVC0 666 aaPredicted RBP22.55■■□□□ 1.2
YBX3-201ENST00000228251 CHMP4CQ96CF2 233 aa22.55■■□□□ 1.2
YBX3-201ENST00000228251 NARFQ9UHQ1 456 aa22.55■■□□□ 1.2
YBX3-201ENST00000228251 CACNA1SQ13698 1873 aa22.55■■□□□ 1.2
YBX3-201ENST00000228251 FDPSP14324 419 aaKnown RBP22.54■■□□□ 1.2
YBX3-201ENST00000228251 ADD1P35611 737 aaKnown RBP22.54■■□□□ 1.2
YBX3-201ENST00000228251 TBC1D9BQ66K14 1250 aa22.54■■□□□ 1.2
YBX3-201ENST00000228251 EPB41L4AQ9HCS5 686 aaPredicted RBP22.54■■□□□ 1.2
YBX3-201ENST00000228251 COL1A1P02452 1464 aaPredicted RBP22.54■■□□□ 1.2
YBX3-201ENST00000228251 ECM29Q5VYK3 1845 aa22.54■■□□□ 1.2
YBX3-201ENST00000228251 MAP3K12Q12852 859 aa22.53■■□□□ 1.2
YBX3-201ENST00000228251 FAM184AQ8NB25 1140 aa22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms