RNA–Protein interactions for RNA: ENSMUST00000005705.7

Trim28-201, Transcript of Transcription intermediary factor 1-beta, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim28, Length 3,245 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28-201ENSMUST00000005705 Dnm1P39053 867 aa18.82■□□□□ 0.6
Trim28-201ENSMUST00000005705 Mkrn3Q60764 544 aa18.82■□□□□ 0.6
Trim28-201ENSMUST00000005705 Atg9aQ68FE2 551 aa18.82■□□□□ 0.6
Trim28-201ENSMUST00000005705 Nrxn3Q6P9K9 1571 aa18.82■□□□□ 0.6
Trim28-201ENSMUST00000005705 Fsd2Q8BZ52 692 aa18.82■□□□□ 0.6
Trim28-201ENSMUST00000005705 Krt25Q8VCW2 446 aa18.82■□□□□ 0.6
Trim28-201ENSMUST00000005705 Slc4a1P04919 929 aa18.81■□□□□ 0.6
Trim28-201ENSMUST00000005705 Ddx41Q91VN6 622 aaKnown RBP18.81■□□□□ 0.6
Trim28-201ENSMUST00000005705 Nip7Q9CXK8 180 aaKnown RBP18.81■□□□□ 0.6
Trim28-201ENSMUST00000005705 Efcc1Q9JJF6 558 aa18.81■□□□□ 0.6
Trim28-201ENSMUST00000005705 Magi2Q9WVQ1 1275 aa18.81■□□□□ 0.6
Trim28-201ENSMUST00000005705 Cfap99A0A140LIX9 648 aa18.81■□□□□ 0.6
Trim28-201ENSMUST00000005705 Me1P06801 572 aa18.81■□□□□ 0.6
Trim28-201ENSMUST00000005705 XpcP51612 930 aa18.81■□□□□ 0.6
Trim28-201ENSMUST00000005705 Ddx58Q6Q899 926 aa18.81■□□□□ 0.6
Trim28-201ENSMUST00000005705 Zkscan8Q8BSL0 588 aa18.81■□□□□ 0.6
Trim28-201ENSMUST00000005705 Bmp2kQ91Z96 1138 aa18.81■□□□□ 0.6
Trim28-201ENSMUST00000005705 Luzp1Q8R4U7 1068 aaKnown RBP18.8■□□□□ 0.6
Trim28-201ENSMUST00000005705 Zkscan5Q9Z1D8 819 aa18.8■□□□□ 0.6
Trim28-201ENSMUST00000005705 Clec11aO88200 328 aa18.8■□□□□ 0.6
Trim28-201ENSMUST00000005705 Pla2g4fQ50L41 855 aa18.8■□□□□ 0.6
Trim28-201ENSMUST00000005705 Prpf4bQ61136 1007 aaKnown RBP18.8■□□□□ 0.6
Trim28-201ENSMUST00000005705 Znf532Q6NXK2 1036 aa18.8■□□□□ 0.6
Trim28-201ENSMUST00000005705 Snw1Q9CSN1 536 aaKnown RBP18.8■□□□□ 0.6
Trim28-201ENSMUST00000005705 Xpo4Q9ESJ0 1151 aa18.8■□□□□ 0.6
Trim28-201ENSMUST00000005705 Gli3Q61602 1583 aa18.8■□□□□ 0.6
Trim28-201ENSMUST00000005705 Dhx40Q6PE54 779 aaKnown RBP18.79■□□□□ 0.6
Trim28-201ENSMUST00000005705 Q8BZJ8 459 aa18.79■□□□□ 0.6
Trim28-201ENSMUST00000005705 Mtmr3Q8K296 1196 aa18.79■□□□□ 0.6
Trim28-201ENSMUST00000005705 Cnot6lQ8VEG6 555 aa18.79■□□□□ 0.6
Trim28-201ENSMUST00000005705 Lonrf3Q9D4H7 753 aa18.79■□□□□ 0.6
Trim28-201ENSMUST00000005705 Tpm1P58771 284 aa18.79■□□□□ 0.6
Trim28-201ENSMUST00000005705 Washc4Q3UMB9 1173 aa18.79■□□□□ 0.6
Trim28-201ENSMUST00000005705 Ints5Q8CHT3 1018 aa18.79■□□□□ 0.6
Trim28-201ENSMUST00000005705 Odf2lQ9D478 642 aa18.79■□□□□ 0.6
Trim28-201ENSMUST00000005705 Ercc6lQ8BHK9 1240 aa18.79■□□□□ 0.6
Trim28-201ENSMUST00000005705 Cep55Q8BT07 462 aa18.79■□□□□ 0.6
Trim28-201ENSMUST00000005705 Vps18Q8R307 973 aa18.79■□□□□ 0.6
Trim28-201ENSMUST00000005705 Tns2Q8CGB6 1400 aa18.78■□□□□ 0.6
Trim28-201ENSMUST00000005705 Trim25Q61510 634 aaKnown RBP18.78■□□□□ 0.6
Trim28-201ENSMUST00000005705 Washc1Q8VDD8 475 aa18.78■□□□□ 0.6
Trim28-201ENSMUST00000005705 Lrrc59Q922Q8 307 aaKnown RBP18.78■□□□□ 0.6
Trim28-201ENSMUST00000005705 Usp44Q8C2S0 711 aa18.78■□□□□ 0.6
Trim28-201ENSMUST00000005705 Large1Q9Z1M7 756 aa18.78■□□□□ 0.6
Trim28-201ENSMUST00000005705 Lcmt1A0A0U1RNF2 332 aa18.78■□□□□ 0.6
Trim28-201ENSMUST00000005705 Eya2O08575 532 aa18.78■□□□□ 0.6
Trim28-201ENSMUST00000005705 Llgl2Q3TJ91 1027 aa18.78■□□□□ 0.6
Trim28-201ENSMUST00000005705 Zbtb40Q6PCS8 1258 aa18.78■□□□□ 0.6
Trim28-201ENSMUST00000005705 Rec8Q8C5S7 591 aa18.78■□□□□ 0.6
Trim28-201ENSMUST00000005705 SnrkQ8VDU5 748 aa18.78■□□□□ 0.6
Trim28-201ENSMUST00000005705 Hmg20bQ9Z104 317 aa18.78■□□□□ 0.6
Trim28-201ENSMUST00000005705 Rgs9O54828 675 aa18.77■□□□□ 0.6
Trim28-201ENSMUST00000005705 Kcnj14Q8JZN3 434 aa18.77■□□□□ 0.6
Trim28-201ENSMUST00000005705 Klhl34A2AI76 644 aa18.77■□□□□ 0.59
Trim28-201ENSMUST00000005705 Gpr182P43142 395 aa18.77■□□□□ 0.59
Trim28-201ENSMUST00000005705 Smc4Q8CG47 1286 aa18.77■□□□□ 0.59
Trim28-201ENSMUST00000005705 Tmc2Q8R4P4 888 aa18.76■□□□□ 0.59
Trim28-201ENSMUST00000005705 Vps16Q920Q4 839 aa18.76■□□□□ 0.59
Trim28-201ENSMUST00000005705 Pik3ap1Q9EQ32 811 aa18.76■□□□□ 0.59
Trim28-201ENSMUST00000005705 Paxbp1P58501 919 aa18.76■□□□□ 0.59
Trim28-201ENSMUST00000005705 Mcm6P97311 821 aa18.76■□□□□ 0.59
Trim28-201ENSMUST00000005705 Mei4Q8BRM6 389 aa18.76■□□□□ 0.59
Trim28-201ENSMUST00000005705 Krtap5-3Q9D226 196 aa18.76■□□□□ 0.59
Trim28-201ENSMUST00000005705 Bicdl1A0JNT9 577 aa18.76■□□□□ 0.59
Trim28-201ENSMUST00000005705 Plekhd1B2RPU2 505 aa18.76■□□□□ 0.59
Trim28-201ENSMUST00000005705 Lipo1J3QME6 396 aa18.76■□□□□ 0.59
Trim28-201ENSMUST00000005705 LyarQ08288 388 aaKnown RBP18.76■□□□□ 0.59
Trim28-201ENSMUST00000005705 Agtpbp1Q641K1 1218 aa18.76■□□□□ 0.59
Trim28-201ENSMUST00000005705 Dnm3Q8BZ98 863 aa18.76■□□□□ 0.59
Trim28-201ENSMUST00000005705 CoblQ5NBX1 1337 aaKnown RBP18.76■□□□□ 0.59
Trim28-201ENSMUST00000005705 Unc13bQ9Z1N9 1602 aa18.75■□□□□ 0.59
Trim28-201ENSMUST00000005705 Ddx60E9PZQ1 1711 aa18.75■□□□□ 0.59
Trim28-201ENSMUST00000005705 Wdr3Q8BHB4 942 aaKnown RBP18.75■□□□□ 0.59
Trim28-201ENSMUST00000005705 Clic6Q8BHB9 596 aa18.75■□□□□ 0.59
Trim28-201ENSMUST00000005705 Acot9Q9R0X4 439 aaKnown RBP18.75■□□□□ 0.59
Trim28-201ENSMUST00000005705 Ces1hD3Z298 562 aa18.75■□□□□ 0.59
Trim28-201ENSMUST00000005705 Gsdma2Q32M21 443 aa18.75■□□□□ 0.59
Trim28-201ENSMUST00000005705 Ankrd40Q5SUE8 363 aa18.75■□□□□ 0.59
Trim28-201ENSMUST00000005705 Ssfa2Q922B9 1252 aa18.75■□□□□ 0.59
Trim28-201ENSMUST00000005705 Col4a3bpQ9EQG9 624 aa18.75■□□□□ 0.59
Trim28-201ENSMUST00000005705 Col4a1P02463 1669 aa18.75■□□□□ 0.59
Trim28-201ENSMUST00000005705 Diaph1O08808 1255 aa18.74■□□□□ 0.59
Trim28-201ENSMUST00000005705 Actn3O88990 900 aaKnown RBP18.74■□□□□ 0.59
Trim28-201ENSMUST00000005705 Eif5P59325 429 aaKnown RBP18.74■□□□□ 0.59
Trim28-201ENSMUST00000005705 NfkbibQ60778 359 aa18.74■□□□□ 0.59
Trim28-201ENSMUST00000005705 Pnpla2Q8BJ56 486 aa18.74■□□□□ 0.59
Trim28-201ENSMUST00000005705 Shisa4Q8CA71 197 aa18.74■□□□□ 0.59
Trim28-201ENSMUST00000005705 Myl3P09542 204 aa18.74■□□□□ 0.59
Trim28-201ENSMUST00000005705 Surf1P09925 306 aa18.74■□□□□ 0.59
Trim28-201ENSMUST00000005705 Ccdc102aQ3TMW1 549 aa18.74■□□□□ 0.59
Trim28-201ENSMUST00000005705 Cyp7a1Q64505 503 aa18.74■□□□□ 0.59
Trim28-201ENSMUST00000005705 Zmynd15Q8C0R7 736 aa18.74■□□□□ 0.59
Trim28-201ENSMUST00000005705 Ugt1a6bK9J7B2 531 aa18.74■□□□□ 0.59
Trim28-201ENSMUST00000005705 Rrp1P56183 494 aaKnown RBP18.74■□□□□ 0.59
Trim28-201ENSMUST00000005705 Ugt1a6Q64435 531 aa18.74■□□□□ 0.59
Trim28-201ENSMUST00000005705 Q66JV7 365 aa18.74■□□□□ 0.59
Trim28-201ENSMUST00000005705 Ugt1a7cQ6ZQM8 531 aa18.74■□□□□ 0.59
Trim28-201ENSMUST00000005705 Cep120Q7TSG1 988 aa18.74■□□□□ 0.59
Trim28-201ENSMUST00000005705 CpvlQ9D3S9 478 aa18.74■□□□□ 0.59
Trim28-201ENSMUST00000005705 9230110C19RikQ8CC70 267 aa18.73■□□□□ 0.59
Retrieved 100 of 22,080 RNA–protein pairs in 33.4 ms