Protein–RNA interactions for Protein: P02463

Col4a1, Collagen alpha-1(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a1P02463 Gm25239-201ENSMUST00000174915 86 ntBASIC49.55■■■■■ 5.52
Col4a1P02463 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC46.01■■■■■ 4.96
Col4a1P02463 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC44.96■■■■■ 4.79
Col4a1P02463 Gm24109-201ENSMUST00000175489 103 ntBASIC43.24■■■■■ 4.51
Col4a1P02463 Gm15042-201ENSMUST00000120212 883 ntBASIC43.08■■■■■ 4.49
Col4a1P02463 Gm15045-201ENSMUST00000117359 883 ntBASIC42.35■■■■■ 4.37
Col4a1P02463 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC41.84■■■■■ 4.29
Col4a1P02463 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC41.83■■■■■ 4.29
Col4a1P02463 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC41.67■■■■■ 4.26
Col4a1P02463 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC41.52■■■■■ 4.24
Col4a1P02463 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC41.19■■■■■ 4.18
Col4a1P02463 Gm23366-201ENSMUST00000175022 89 ntBASIC41.17■■■■■ 4.18
Col4a1P02463 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC40.99■■■■■ 4.15
Col4a1P02463 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC40.31■■■■■ 4.04
Col4a1P02463 AC153911.1-202ENSMUST00000218534 1034 ntBASIC40.25■■■■■ 4.03
Col4a1P02463 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC40.1■■■■■ 4.01
Col4a1P02463 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC40.02■■■■■ 4
Col4a1P02463 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC39.65■■■■□ 3.94
Col4a1P02463 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC39.63■■■■□ 3.93
Col4a1P02463 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC39.62■■■■□ 3.93
Col4a1P02463 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC39.58■■■■□ 3.93
Col4a1P02463 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC39.56■■■■□ 3.92
Col4a1P02463 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC39.56■■■■□ 3.92
Col4a1P02463 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC39.39■■■■□ 3.9
Col4a1P02463 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC39.38■■■■□ 3.89
Col4a1P02463 Gm25238-201ENSMUST00000174914 89 ntBASIC39.23■■■■□ 3.87
Col4a1P02463 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC39.19■■■■□ 3.86
Col4a1P02463 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC39.18■■■■□ 3.86
Col4a1P02463 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC39.13■■■■□ 3.86
Col4a1P02463 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC39.11■■■■□ 3.85
Col4a1P02463 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC38.98■■■■□ 3.83
Col4a1P02463 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC38.93■■■■□ 3.82
Col4a1P02463 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC38.82■■■■□ 3.8
Col4a1P02463 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC38.6■■■■□ 3.77
Col4a1P02463 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC38.58■■■■□ 3.77
Col4a1P02463 Psd-208ENSMUST00000224556 2034 ntBASIC38.41■■■■□ 3.74
Col4a1P02463 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC38.35■■■■□ 3.73
Col4a1P02463 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC38.27■■■■□ 3.72
Col4a1P02463 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC38.09■■■■□ 3.69
Col4a1P02463 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC38■■■■□ 3.67
Col4a1P02463 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC37.9■■■■□ 3.66
Col4a1P02463 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC37.82■■■■□ 3.64
Col4a1P02463 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC37.76■■■■□ 3.64
Col4a1P02463 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC37.71■■■■□ 3.63
Col4a1P02463 Gm27325-201ENSMUST00000175467 74 ntBASIC37.71■■■■□ 3.63
Col4a1P02463 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC37.7■■■■□ 3.63
Col4a1P02463 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC37.6■■■■□ 3.61
Col4a1P02463 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC37.42■■■■□ 3.58
Col4a1P02463 Gm25262-201ENSMUST00000174934 133 ntBASIC37.34■■■■□ 3.57
Col4a1P02463 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC37.31■■■■□ 3.56
Col4a1P02463 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC37.26■■■■□ 3.55
Col4a1P02463 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC37.19■■■■□ 3.54
Col4a1P02463 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC37.15■■■■□ 3.54
Col4a1P02463 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC37.14■■■■□ 3.54
Col4a1P02463 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC37.1■■■■□ 3.53
Col4a1P02463 Rab21-202ENSMUST00000218831 843 ntBASIC37.06■■■■□ 3.52
Col4a1P02463 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC37.04■■■■□ 3.52
Col4a1P02463 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC37.02■■■■□ 3.52
Col4a1P02463 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC37■■■■□ 3.51
Col4a1P02463 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC36.96■■■■□ 3.51
Col4a1P02463 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC36.92■■■■□ 3.5
Col4a1P02463 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC36.92■■■■□ 3.5
Col4a1P02463 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC36.83■■■■□ 3.49
Col4a1P02463 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC36.8■■■■□ 3.48
Col4a1P02463 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC36.8■■■■□ 3.48
Col4a1P02463 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC36.74■■■■□ 3.47
Col4a1P02463 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC36.69■■■■□ 3.46
Col4a1P02463 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC36.69■■■■□ 3.46
Col4a1P02463 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC36.68■■■■□ 3.46
Col4a1P02463 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC36.64■■■■□ 3.46
Col4a1P02463 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC36.63■■■■□ 3.45
Col4a1P02463 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC36.62■■■■□ 3.45
Col4a1P02463 Gm8109-201ENSMUST00000194076 746 ntBASIC36.54■■■■□ 3.44
Col4a1P02463 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC36.52■■■■□ 3.44
Col4a1P02463 Gm26115-201ENSMUST00000175605 87 ntBASIC36.5■■■■□ 3.43
Col4a1P02463 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC36.43■■■■□ 3.42
Col4a1P02463 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC36.42■■■■□ 3.42
Col4a1P02463 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC36.38■■■■□ 3.41
Col4a1P02463 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC36.38■■■■□ 3.41
Col4a1P02463 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC36.34■■■■□ 3.41
Col4a1P02463 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC36.32■■■■□ 3.4
Col4a1P02463 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC36.32■■■■□ 3.4
Col4a1P02463 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC36.27■■■■□ 3.4
Col4a1P02463 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC36.19■■■■□ 3.38
Col4a1P02463 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC36.19■■■■□ 3.38
Col4a1P02463 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC36.18■■■■□ 3.38
Col4a1P02463 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC36.16■■■■□ 3.38
Col4a1P02463 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC36.08■■■■□ 3.37
Col4a1P02463 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC36.08■■■■□ 3.37
Col4a1P02463 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC36.04■■■■□ 3.36
Col4a1P02463 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC36.04■■■■□ 3.36
Col4a1P02463 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC36■■■■□ 3.35
Col4a1P02463 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC35.99■■■■□ 3.35
Col4a1P02463 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC35.96■■■■□ 3.35
Col4a1P02463 Gm17082-201ENSMUST00000166043 1091 ntBASIC35.94■■■■□ 3.34
Col4a1P02463 Gm42596-201ENSMUST00000196305 1958 ntBASIC35.92■■■■□ 3.34
Col4a1P02463 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC35.85■■■■□ 3.33
Col4a1P02463 Gm10524-201ENSMUST00000181931 1893 ntBASIC35.83■■■■□ 3.33
Col4a1P02463 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC35.82■■■■□ 3.32
Col4a1P02463 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC35.81■■■■□ 3.32
Retrieved 100 of 76,532 protein–RNA pairs in 11.9 ms