Protein–RNA interactions for Protein: P02463

Col4a1, Collagen alpha-1(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a1P02463 Gm25239-201ENSMUST00000174915 86 ntBASIC49,55■■■■■ 5,52
Col4a1P02463 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC46,01■■■■■ 4,96
Col4a1P02463 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC44,96■■■■■ 4,79
Col4a1P02463 Gm24109-201ENSMUST00000175489 103 ntBASIC43,24■■■■■ 4,51
Col4a1P02463 Gm15042-201ENSMUST00000120212 883 ntBASIC43,08■■■■■ 4,49
Col4a1P02463 Gm15045-201ENSMUST00000117359 883 ntBASIC42,35■■■■■ 4,37
Col4a1P02463 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC41,84■■■■■ 4,29
Col4a1P02463 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC41,83■■■■■ 4,29
Col4a1P02463 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC41,67■■■■■ 4,26
Col4a1P02463 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC41,52■■■■■ 4,24
Col4a1P02463 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC41,19■■■■■ 4,18
Col4a1P02463 Gm23366-201ENSMUST00000175022 89 ntBASIC41,17■■■■■ 4,18
Col4a1P02463 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC40,99■■■■■ 4,15
Col4a1P02463 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC40,31■■■■■ 4,04
Col4a1P02463 AC153911.1-202ENSMUST00000218534 1034 ntBASIC40,25■■■■■ 4,03
Col4a1P02463 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC40,1■■■■■ 4,01
Col4a1P02463 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC40,02■■■■■ 4
Col4a1P02463 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC39,65■■■■□ 3,94
Col4a1P02463 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC39,63■■■■□ 3,93
Col4a1P02463 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC39,62■■■■□ 3,93
Col4a1P02463 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC39,58■■■■□ 3,93
Col4a1P02463 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC39,56■■■■□ 3,92
Col4a1P02463 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC39,56■■■■□ 3,92
Col4a1P02463 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC39,39■■■■□ 3,9
Col4a1P02463 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC39,38■■■■□ 3,89
Col4a1P02463 Gm25238-201ENSMUST00000174914 89 ntBASIC39,23■■■■□ 3,87
Col4a1P02463 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC39,19■■■■□ 3,86
Col4a1P02463 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC39,18■■■■□ 3,86
Col4a1P02463 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC39,13■■■■□ 3,86
Col4a1P02463 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC39,11■■■■□ 3,85
Col4a1P02463 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC38,98■■■■□ 3,83
Col4a1P02463 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC38,93■■■■□ 3,82
Col4a1P02463 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC38,82■■■■□ 3,8
Col4a1P02463 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC38,6■■■■□ 3,77
Col4a1P02463 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC38,58■■■■□ 3,77
Col4a1P02463 Psd-208ENSMUST00000224556 2034 ntBASIC38,41■■■■□ 3,74
Col4a1P02463 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC38,35■■■■□ 3,73
Col4a1P02463 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC38,27■■■■□ 3,72
Col4a1P02463 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC38,09■■■■□ 3,69
Col4a1P02463 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC38■■■■□ 3,67
Col4a1P02463 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC37,9■■■■□ 3,66
Col4a1P02463 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC37,82■■■■□ 3,64
Col4a1P02463 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC37,76■■■■□ 3,64
Col4a1P02463 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC37,71■■■■□ 3,63
Col4a1P02463 Gm27325-201ENSMUST00000175467 74 ntBASIC37,71■■■■□ 3,63
Col4a1P02463 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC37,7■■■■□ 3,63
Col4a1P02463 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC37,6■■■■□ 3,61
Col4a1P02463 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC37,42■■■■□ 3,58
Col4a1P02463 Gm25262-201ENSMUST00000174934 133 ntBASIC37,34■■■■□ 3,57
Col4a1P02463 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC37,31■■■■□ 3,56
Col4a1P02463 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC37,26■■■■□ 3,55
Col4a1P02463 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC37,19■■■■□ 3,54
Col4a1P02463 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC37,15■■■■□ 3,54
Col4a1P02463 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC37,14■■■■□ 3,54
Col4a1P02463 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC37,1■■■■□ 3,53
Col4a1P02463 Rab21-202ENSMUST00000218831 843 ntBASIC37,06■■■■□ 3,52
Col4a1P02463 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC37,04■■■■□ 3,52
Col4a1P02463 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC37,02■■■■□ 3,52
Col4a1P02463 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC37■■■■□ 3,51
Col4a1P02463 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC36,96■■■■□ 3,51
Col4a1P02463 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC36,92■■■■□ 3,5
Col4a1P02463 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC36,92■■■■□ 3,5
Col4a1P02463 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC36,83■■■■□ 3,49
Col4a1P02463 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC36,8■■■■□ 3,48
Col4a1P02463 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC36,8■■■■□ 3,48
Col4a1P02463 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC36,74■■■■□ 3,47
Col4a1P02463 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC36,69■■■■□ 3,46
Col4a1P02463 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC36,69■■■■□ 3,46
Col4a1P02463 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC36,68■■■■□ 3,46
Col4a1P02463 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC36,64■■■■□ 3,46
Col4a1P02463 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC36,63■■■■□ 3,45
Col4a1P02463 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC36,62■■■■□ 3,45
Col4a1P02463 Gm8109-201ENSMUST00000194076 746 ntBASIC36,54■■■■□ 3,44
Col4a1P02463 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC36,52■■■■□ 3,44
Col4a1P02463 Gm26115-201ENSMUST00000175605 87 ntBASIC36,5■■■■□ 3,43
Col4a1P02463 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC36,43■■■■□ 3,42
Col4a1P02463 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC36,42■■■■□ 3,42
Col4a1P02463 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC36,38■■■■□ 3,41
Col4a1P02463 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC36,38■■■■□ 3,41
Col4a1P02463 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC36,34■■■■□ 3,41
Col4a1P02463 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC36,32■■■■□ 3,4
Col4a1P02463 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC36,32■■■■□ 3,4
Col4a1P02463 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC36,27■■■■□ 3,4
Col4a1P02463 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC36,19■■■■□ 3,38
Col4a1P02463 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC36,19■■■■□ 3,38
Col4a1P02463 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC36,18■■■■□ 3,38
Col4a1P02463 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC36,16■■■■□ 3,38
Col4a1P02463 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC36,08■■■■□ 3,37
Col4a1P02463 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC36,08■■■■□ 3,37
Col4a1P02463 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC36,04■■■■□ 3,36
Col4a1P02463 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC36,04■■■■□ 3,36
Col4a1P02463 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC36■■■■□ 3,35
Col4a1P02463 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC35,99■■■■□ 3,35
Col4a1P02463 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC35,96■■■■□ 3,35
Col4a1P02463 Gm17082-201ENSMUST00000166043 1091 ntBASIC35,94■■■■□ 3,34
Col4a1P02463 Gm42596-201ENSMUST00000196305 1958 ntBASIC35,92■■■■□ 3,34
Col4a1P02463 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC35,85■■■■□ 3,33
Col4a1P02463 Gm10524-201ENSMUST00000181931 1893 ntBASIC35,83■■■■□ 3,33
Col4a1P02463 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC35,82■■■■□ 3,32
Col4a1P02463 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC35,81■■■■□ 3,32
Retrieved 100 of 76,532 protein–RNA pairs in 11,3 ms