RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 NOL3O60936 208 aaKnown RBP16.34■□□□□ 0.21
UPF3A-211ENST00000618700 TK1P04183 234 aa16.34■□□□□ 0.21
UPF3A-211ENST00000618700 MSMBP08118 114 aa16.34■□□□□ 0.21
UPF3A-211ENST00000618700 ZNF44P15621 663 aa16.34■□□□□ 0.21
UPF3A-211ENST00000618700 LCN2P80188 198 aa16.34■□□□□ 0.21
UPF3A-211ENST00000618700 PLA2G7Q13093 441 aa16.34■□□□□ 0.21
UPF3A-211ENST00000618700 SPCS2Q15005 226 aa16.34■□□□□ 0.21
UPF3A-211ENST00000618700 TAF9Q16594 264 aa16.34■□□□□ 0.21
UPF3A-211ENST00000618700 OR8H2Q8N162 312 aa16.34■□□□□ 0.21
UPF3A-211ENST00000618700 ASCC1Q8N9N2 400 aaKnown RBP16.34■□□□□ 0.21
UPF3A-211ENST00000618700 SNX22Q96L94 193 aa16.34■□□□□ 0.21
UPF3A-211ENST00000618700 SHARPINQ9H0F6 387 aa16.34■□□□□ 0.21
UPF3A-211ENST00000618700 LPAR5Q9H1C0 372 aa16.34■□□□□ 0.21
UPF3A-211ENST00000618700 RCC2Q9P258 522 aaKnown RBP16.34■□□□□ 0.21
UPF3A-211ENST00000618700 ABCA1O95477 2261 aa16.34■□□□□ 0.21
UPF3A-211ENST00000618700 CSPG4Q6UVK1 2322 aa16.33■□□□□ 0.2
UPF3A-211ENST00000618700 TRAV24A0A0B4J272 114 aa16.33■□□□□ 0.2
UPF3A-211ENST00000618700 C22orf46C9J442 243 aa16.33■□□□□ 0.2
UPF3A-211ENST00000618700 DEGS1O15121 323 aa16.33■□□□□ 0.2
UPF3A-211ENST00000618700 OR7C1O76099 320 aaPredicted RBP16.33■□□□□ 0.2
UPF3A-211ENST00000618700 SNRPBP14678 240 aaKnown RBP16.33■□□□□ 0.2
UPF3A-211ENST00000618700 RAB6AP20340 208 aa16.33■□□□□ 0.2
UPF3A-211ENST00000618700 OR3A1P47881 315 aa16.33■□□□□ 0.2
UPF3A-211ENST00000618700 SMCPP49901 116 aaPredicted RBP16.33■□□□□ 0.2
UPF3A-211ENST00000618700 SCAND1P57086 179 aa16.33■□□□□ 0.2
UPF3A-211ENST00000618700 PAX2Q02962 417 aa16.33■□□□□ 0.2
UPF3A-211ENST00000618700 C11orf91Q3C1V1 193 aa16.33■□□□□ 0.2
UPF3A-211ENST00000618700 IDNKQ5T6J7 187 aa16.33■□□□□ 0.2
UPF3A-211ENST00000618700 LGALS14Q8TCE9 139 aa16.33■□□□□ 0.2
UPF3A-211ENST00000618700 ST8SIA4Q92187 359 aa16.33■□□□□ 0.2
UPF3A-211ENST00000618700 DACT3Q96B18 629 aaPredicted RBP16.33■□□□□ 0.2
UPF3A-211ENST00000618700 NICN1Q9BSH3 213 aa16.33■□□□□ 0.2
UPF3A-211ENST00000618700 LPAR2Q9HBW0 351 aa16.33■□□□□ 0.2
UPF3A-211ENST00000618700 A0A0A6YYD4 124 aa16.32■□□□□ 0.2
UPF3A-211ENST00000618700 PAHP00439 452 aa16.32■□□□□ 0.2
UPF3A-211ENST00000618700 CSN2P05814 226 aa16.32■□□□□ 0.2
UPF3A-211ENST00000618700 ZNF16P17020 682 aaPredicted RBP16.32■□□□□ 0.2
UPF3A-211ENST00000618700 GABRR1P24046 479 aa16.32■□□□□ 0.2
UPF3A-211ENST00000618700 EFNB2P52799 333 aa16.32■□□□□ 0.2
UPF3A-211ENST00000618700 SCN1BQ07699 218 aa16.32■□□□□ 0.2
UPF3A-211ENST00000618700 CYB5R2Q6BCY4 276 aa16.32■□□□□ 0.2
UPF3A-211ENST00000618700 SIGIRRQ6IA17 410 aa16.32■□□□□ 0.2
UPF3A-211ENST00000618700 FAM89BQ8N5H3 189 aa16.32■□□□□ 0.2
UPF3A-211ENST00000618700 OR4S1Q8NGB4 309 aa16.32■□□□□ 0.2
UPF3A-211ENST00000618700 PTX4Q96A99 478 aa16.32■□□□□ 0.2
UPF3A-211ENST00000618700 MRI1Q9BV20 369 aa16.32■□□□□ 0.2
UPF3A-211ENST00000618700 CHST6Q9GZX3 395 aa16.32■□□□□ 0.2
UPF3A-211ENST00000618700 RAB22AQ9UL26 194 aa16.32■□□□□ 0.2
UPF3A-211ENST00000618700 TLN2Q9Y4G6 2542 aa16.32■□□□□ 0.2
UPF3A-211ENST00000618700 LOC105371242A0A075B767 164 aa16.31■□□□□ 0.2
UPF3A-211ENST00000618700 TRAV20A0A0B4J274 112 aa16.31■□□□□ 0.2
UPF3A-211ENST00000618700 PPIAL4CA0A0B4J2A2 164 aa16.31■□□□□ 0.2
UPF3A-211ENST00000618700 SMIM31A0A1B0GVY4 71 aa16.31■□□□□ 0.2
UPF3A-211ENST00000618700 ZNF701M0R085 212 aaPredicted RBP16.31■□□□□ 0.2
UPF3A-211ENST00000618700 NDUFB7P17568 137 aa16.31■□□□□ 0.2
UPF3A-211ENST00000618700 METAP1DQ6UB28 335 aaPredicted RBP16.31■□□□□ 0.2
UPF3A-211ENST00000618700 BTN2A1Q7KYR7 527 aa16.31■□□□□ 0.2
UPF3A-211ENST00000618700 BIVMQ86UB2 503 aa16.31■□□□□ 0.2
UPF3A-211ENST00000618700 OR5D13Q8NGL4 314 aa16.31■□□□□ 0.2
UPF3A-211ENST00000618700 C8orf46Q8TAG6 207 aa16.31■□□□□ 0.2
UPF3A-211ENST00000618700 DCTN5Q9BTE1 182 aa16.31■□□□□ 0.2
UPF3A-211ENST00000618700 URM1Q9BTM9 101 aaKnown RBP16.31■□□□□ 0.2
UPF3A-211ENST00000618700 PPA2Q9H2U2 334 aa16.31■□□□□ 0.2
UPF3A-211ENST00000618700 SPACA1Q9HBV2 294 aa16.31■□□□□ 0.2
UPF3A-211ENST00000618700 ABRACLQ9P1F3 81 aa16.31■□□□□ 0.2
UPF3A-211ENST00000618700 ETV7Q9Y603 341 aa16.31■□□□□ 0.2
UPF3A-211ENST00000618700 DOCK11Q5JSL3 2073 aa16.31■□□□□ 0.2
UPF3A-211ENST00000618700 IGHV2-70DA0A0C4DH43 119 aa16.3■□□□□ 0.2
UPF3A-211ENST00000618700 FOXI3A8MTJ6 420 aaPredicted RBP16.3■□□□□ 0.2
UPF3A-211ENST00000618700 MGST3O14880 152 aa16.3■□□□□ 0.2
UPF3A-211ENST00000618700 CD5LO43866 347 aa16.3■□□□□ 0.2
UPF3A-211ENST00000618700 ECDO95905 644 aaPredicted RBP16.3■□□□□ 0.2
UPF3A-211ENST00000618700 RORCP51449 518 aa16.3■□□□□ 0.2
UPF3A-211ENST00000618700 PAX5Q02548 391 aa16.3■□□□□ 0.2
UPF3A-211ENST00000618700 GRK1Q15835 563 aa16.3■□□□□ 0.2
UPF3A-211ENST00000618700 PAN3Q58A45 887 aaKnown RBP16.3■□□□□ 0.2
UPF3A-211ENST00000618700 CD276Q5ZPR3 534 aa16.3■□□□□ 0.2
UPF3A-211ENST00000618700 SUMF2Q8NBJ7 301 aa16.3■□□□□ 0.2
UPF3A-211ENST00000618700 PPP1R35Q8TAP8 253 aa16.3■□□□□ 0.2
UPF3A-211ENST00000618700 TMEM186Q96B77 213 aa16.3■□□□□ 0.2
UPF3A-211ENST00000618700 DPCDQ9BVM2 203 aaPredicted RBP16.3■□□□□ 0.2
UPF3A-211ENST00000618700 RSL24D1Q9UHA3 163 aaKnown RBP16.3■□□□□ 0.2
UPF3A-211ENST00000618700 RPUSD1Q9UJJ7 312 aaKnown RBP16.3■□□□□ 0.2
UPF3A-211ENST00000618700 TRBV23-1A0A0A0MS06 115 aa16.29■□□□□ 0.2
UPF3A-211ENST00000618700 DPPA5A6NC42 116 aa16.29■□□□□ 0.2
UPF3A-211ENST00000618700 CCDC160A6NGH7 325 aa16.29■□□□□ 0.2
UPF3A-211ENST00000618700 HSPB6O14558 160 aa16.29■□□□□ 0.2
UPF3A-211ENST00000618700 PDCD6O75340 191 aa16.29■□□□□ 0.2
UPF3A-211ENST00000618700 TGFAP01135 160 aa16.29■□□□□ 0.2
UPF3A-211ENST00000618700 CHATP28329 748 aa16.29■□□□□ 0.2
UPF3A-211ENST00000618700 DVL1P1P54792 670 aaPredicted RBP16.29■□□□□ 0.2
UPF3A-211ENST00000618700 GLCCI1Q86VQ1 547 aa16.29■□□□□ 0.2
UPF3A-211ENST00000618700 LY6G5BQ8NDX9 201 aa16.29■□□□□ 0.2
UPF3A-211ENST00000618700 OR5H6Q8NGV6 325 aa16.29■□□□□ 0.2
UPF3A-211ENST00000618700 DYNC2LI1Q8TCX1 351 aa16.29■□□□□ 0.2
UPF3A-211ENST00000618700 SLC25A38Q96DW6 304 aa16.29■□□□□ 0.2
UPF3A-211ENST00000618700 SMR3AQ99954 134 aa16.29■□□□□ 0.2
UPF3A-211ENST00000618700 MMP26Q9NRE1 261 aa16.29■□□□□ 0.2
UPF3A-211ENST00000618700 HIF1ANQ9NWT6 349 aa16.29■□□□□ 0.2
UPF3A-211ENST00000618700 SPATA2Q9UM82 520 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms