RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 NKAIN1Q4KMZ8 207 aa1.55□□□□□ -2.16
CD44-215ENST00000525241 ACTBL2Q562R1 376 aa1.55□□□□□ -2.16
CD44-215ENST00000525241 HSP90AA4PQ58FG1 418 aa1.55□□□□□ -2.16
CD44-215ENST00000525241 FAM19A1Q7Z5A9 133 aa1.55□□□□□ -2.16
CD44-215ENST00000525241 MSRB3Q8IXL7 192 aa1.55□□□□□ -2.16
CD44-215ENST00000525241 BLNKQ8WV28 456 aa1.55□□□□□ -2.16
CD44-215ENST00000525241 CACNG8Q8WXS5 425 aa1.55□□□□□ -2.16
CD44-215ENST00000525241 OLFM3Q96PB7 478 aa1.55□□□□□ -2.16
CD44-215ENST00000525241 VAT1Q99536 393 aa1.55□□□□□ -2.16
CD44-215ENST00000525241 BCL7BQ9BQE9 202 aa1.55□□□□□ -2.16
CD44-215ENST00000525241 ANAPC13Q9BS18 74 aa1.55□□□□□ -2.16
CD44-215ENST00000525241 BEX2Q9BXY8 128 aa1.55□□□□□ -2.16
CD44-215ENST00000525241 NXF2Q9GZY0 626 aaKnown RBP1.55□□□□□ -2.16
CD44-215ENST00000525241 ANKHQ9HCJ1 492 aa1.55□□□□□ -2.16
CD44-215ENST00000525241 SDHAF2Q9NX18 166 aa1.55□□□□□ -2.16
CD44-215ENST00000525241 MRPL16Q9NX20 251 aaKnown RBP1.55□□□□□ -2.16
CD44-215ENST00000525241 NRCAMQ92823 1304 aa1.55□□□□□ -2.16
CD44-215ENST00000525241 MUC6Q6W4X9 2439 aa1.55□□□□□ -2.16
CD44-215ENST00000525241 ADAMTSL3P82987 1691 aa1.55□□□□□ -2.16
CD44-215ENST00000525241 A0A0J9YYE9 177 aa1.54□□□□□ -2.16
CD44-215ENST00000525241 RFXANKO14593 260 aa1.54□□□□□ -2.16
CD44-215ENST00000525241 OVOL1O14753 267 aa1.54□□□□□ -2.16
CD44-215ENST00000525241 TRBC1P01850 177 aa1.54□□□□□ -2.16
CD44-215ENST00000525241 PRTN3P24158 256 aa1.54□□□□□ -2.16
CD44-215ENST00000525241 ELK4P28324 431 aa1.54□□□□□ -2.16
CD44-215ENST00000525241 GUSBP1Q15486 140 aa1.54□□□□□ -2.16
CD44-215ENST00000525241 PCOTHQ58A44 107 aa1.54□□□□□ -2.16
CD44-215ENST00000525241 OR6N2Q8NGY6 317 aa1.54□□□□□ -2.16
CD44-215ENST00000525241 LMX1AQ8TE12 382 aa1.54□□□□□ -2.16
CD44-215ENST00000525241 DOK4Q8TEW6 326 aa1.54□□□□□ -2.16
CD44-215ENST00000525241 TWIST2Q8WVJ9 160 aa1.54□□□□□ -2.16
CD44-215ENST00000525241 LINC01587Q99440 93 aa1.54□□□□□ -2.16
CD44-215ENST00000525241 TSSK6Q9BXA6 273 aa1.54□□□□□ -2.16
CD44-215ENST00000525241 ULBP1Q9BZM6 244 aa1.54□□□□□ -2.16
CD44-215ENST00000525241 TMEM106BQ9NUM4 274 aa1.54□□□□□ -2.16
CD44-215ENST00000525241 DNAJC27Q9NZQ0 273 aa1.54□□□□□ -2.16
CD44-215ENST00000525241 VAPAQ9P0L0 249 aa1.54□□□□□ -2.16
CD44-215ENST00000525241 RP1L1Q8IWN7 2480 aaPredicted RBP1.54□□□□□ -2.16
CD44-215ENST00000525241 TRBV24-1A0A075B6N3 115 aa1.53□□□□□ -2.16
CD44-215ENST00000525241 PGPA6NDG6 321 aa1.53□□□□□ -2.16
CD44-215ENST00000525241 POLR3AO14802 1390 aaPredicted RBP1.53□□□□□ -2.16
CD44-215ENST00000525241 MYO1DO94832 1006 aa1.53□□□□□ -2.16
CD44-215ENST00000525241 STAG3L2P0CL84 134 aa1.53□□□□□ -2.16
CD44-215ENST00000525241 GZMHP20718 246 aa1.53□□□□□ -2.16
CD44-215ENST00000525241 CPN2P22792 545 aa1.53□□□□□ -2.16
CD44-215ENST00000525241 ATP5J2P56134 94 aa1.53□□□□□ -2.16
CD44-215ENST00000525241 DEFB103AP81534 67 aa1.53□□□□□ -2.16
CD44-215ENST00000525241 WDR43Q15061 677 aaKnown RBP eCLIP1.53□□□□□ -2.16
CD44-215ENST00000525241 CST6Q15828 149 aa1.53□□□□□ -2.16
CD44-215ENST00000525241 TNXAQ16473 311 aa1.53□□□□□ -2.16
CD44-215ENST00000525241 PYCR3Q53H96 274 aa1.53□□□□□ -2.16
CD44-215ENST00000525241 ZNF322Q6U7Q0 402 aaPredicted RBP1.53□□□□□ -2.16
CD44-215ENST00000525241 ZNF567Q8N184 647 aa1.53□□□□□ -2.16
CD44-215ENST00000525241 OR8K1Q8NGG5 319 aa1.53□□□□□ -2.16
CD44-215ENST00000525241 OR52K1Q8NGK4 314 aa1.53□□□□□ -2.16
CD44-215ENST00000525241 CLHC1Q8NHS4 586 aa1.53□□□□□ -2.16
CD44-215ENST00000525241 B9D2Q9BPU9 175 aa1.53□□□□□ -2.16
CD44-215ENST00000525241 TM6SF2Q9BZW4 377 aa1.53□□□□□ -2.16
CD44-215ENST00000525241 SYT4Q9H2B2 425 aa1.53□□□□□ -2.16
CD44-215ENST00000525241 CYB5R1Q9UHQ9 305 aa1.53□□□□□ -2.16
CD44-215ENST00000525241 ATRNO75882 1429 aa1.52□□□□□ -2.17
CD44-215ENST00000525241 IGHV1-45A0A0A0MS14 117 aa1.52□□□□□ -2.17
CD44-215ENST00000525241 A0A1B0GTI1 187 aa1.52□□□□□ -2.17
CD44-215ENST00000525241 OR5H14A6NHG9 310 aa1.52□□□□□ -2.17
CD44-215ENST00000525241 GPR75O95800 540 aa1.52□□□□□ -2.17
CD44-215ENST00000525241 IFI30P13284 250 aa1.52□□□□□ -2.17
CD44-215ENST00000525241 RESP18Q5W5W9 173 aa1.52□□□□□ -2.17
CD44-215ENST00000525241 DRAXINQ8NBI3 349 aaPredicted RBP1.52□□□□□ -2.17
CD44-215ENST00000525241 ZNF396Q96N95 335 aaPredicted RBP1.52□□□□□ -2.17
CD44-215ENST00000525241 CHTOPQ9Y3Y2 248 aaKnown RBP1.52□□□□□ -2.17
CD44-215ENST00000525241 SORL1Q92673 2214 aa1.52□□□□□ -2.17
CD44-215ENST00000525241 NUP205Q92621 2012 aa1.52□□□□□ -2.17
CD44-215ENST00000525241 MIA3Q5JRA6 1907 aa1.52□□□□□ -2.17
CD44-215ENST00000525241 SYNRGQ9UMZ2 1314 aa1.51□□□□□ -2.17
CD44-215ENST00000525241 TRAV8-3A0A0A6YYJ7 113 aa1.51□□□□□ -2.17
CD44-215ENST00000525241 GSTTP1A0A1W2PQM5 241 aa1.51□□□□□ -2.17
CD44-215ENST00000525241 H3BP45 60 aa1.51□□□□□ -2.17
CD44-215ENST00000525241 M0QXV9 152 aa1.51□□□□□ -2.17
CD44-215ENST00000525241 POP7O75817 140 aaKnown RBP1.51□□□□□ -2.17
CD44-215ENST00000525241 IGKV1-16P04430 117 aa1.51□□□□□ -2.17
CD44-215ENST00000525241 S100A2P29034 98 aa1.51□□□□□ -2.17
CD44-215ENST00000525241 GCLMP48507 274 aa1.51□□□□□ -2.17
CD44-215ENST00000525241 STX4Q12846 297 aa1.51□□□□□ -2.17
CD44-215ENST00000525241 FOXF1Q12946 379 aa1.51□□□□□ -2.17
CD44-215ENST00000525241 ZCWPW2Q504Y3 356 aa1.51□□□□□ -2.17
CD44-215ENST00000525241 ACTL10Q5JWF8 245 aa1.51□□□□□ -2.17
CD44-215ENST00000525241 NXNL2Q5VZ03 156 aa1.51□□□□□ -2.17
CD44-215ENST00000525241 LAIR2Q6ISS4 152 aa1.51□□□□□ -2.17
CD44-215ENST00000525241 NOXRED1Q6NXP6 359 aa1.51□□□□□ -2.17
CD44-215ENST00000525241 SCXQ7RTU7 201 aa1.51□□□□□ -2.17
CD44-215ENST00000525241 SYS1Q8N2H4 156 aa1.51□□□□□ -2.17
CD44-215ENST00000525241 OR13C9Q8NGT0 318 aa1.51□□□□□ -2.17
CD44-215ENST00000525241 OR6K2Q8NGY2 324 aa1.51□□□□□ -2.17
CD44-215ENST00000525241 OR2V1Q8NHB1 315 aa1.51□□□□□ -2.17
CD44-215ENST00000525241 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP1.51□□□□□ -2.17
CD44-215ENST00000525241 BIRC8Q96P09 236 aa1.51□□□□□ -2.17
CD44-215ENST00000525241 SLC25A31Q9H0C2 315 aa1.51□□□□□ -2.17
CD44-215ENST00000525241 TUBA4BQ9H853 241 aa1.51□□□□□ -2.17
CD44-215ENST00000525241 DIABLOQ9NR28 239 aa1.51□□□□□ -2.17
CD44-215ENST00000525241 STMN3Q9NZ72 180 aa1.51□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms