RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 STARD10Q9Y365 291 aa13.85□□□□□ -0.19
USHBP1-202ENST00000324554 POMT1Q9Y6A1 747 aa13.85□□□□□ -0.19
USHBP1-202ENST00000324554 MUC6Q6W4X9 2439 aa13.85□□□□□ -0.19
USHBP1-202ENST00000324554 RBM11P57052 281 aaKnown RBP13.85□□□□□ -0.19
USHBP1-202ENST00000324554 DAZAP2Q15038 168 aaPredicted RBP13.85□□□□□ -0.19
USHBP1-202ENST00000324554 TMEM45BQ96B21 275 aa13.85□□□□□ -0.19
USHBP1-202ENST00000324554 MSI2Q96DH6 328 aaKnown RBP13.85□□□□□ -0.19
USHBP1-202ENST00000324554 C18orf12Q96KH6 178 aa13.85□□□□□ -0.19
USHBP1-202ENST00000324554 TECTBQ96PL2 329 aa13.85□□□□□ -0.19
USHBP1-202ENST00000324554 CLCC1Q96S66 551 aa13.85□□□□□ -0.19
USHBP1-202ENST00000324554 C1QTNF5Q9BXJ0 243 aa13.85□□□□□ -0.19
USHBP1-202ENST00000324554 PDCD6O75340 191 aa13.84□□□□□ -0.19
USHBP1-202ENST00000324554 NOVA1P51513 510 aaKnown RBP13.84□□□□□ -0.19
USHBP1-202ENST00000324554 PRDM14Q9GZV8 571 aa13.84□□□□□ -0.19
USHBP1-202ENST00000324554 SH3BGRL3Q9H299 93 aa13.84□□□□□ -0.19
USHBP1-202ENST00000324554 ZNF286AQ9HBT8 521 aa13.84□□□□□ -0.19
USHBP1-202ENST00000324554 FAM212BQ9NTI7 297 aaPredicted RBP13.84□□□□□ -0.19
USHBP1-202ENST00000324554 LRFN1Q9P244 771 aa13.84□□□□□ -0.19
USHBP1-202ENST00000324554 H7C1Q1 480 aa13.84□□□□□ -0.19
USHBP1-202ENST00000324554 C1QL1O75973 258 aa13.84□□□□□ -0.19
USHBP1-202ENST00000324554 TSPAN15O95858 294 aa13.84□□□□□ -0.19
USHBP1-202ENST00000324554 DANCRP0C864 163 aa13.84□□□□□ -0.19
USHBP1-202ENST00000324554 SNCAP37840 140 aa13.84□□□□□ -0.19
USHBP1-202ENST00000324554 MALLQ13021 153 aa13.84□□□□□ -0.19
USHBP1-202ENST00000324554 SRSF6Q13247 344 aaKnown RBP13.84□□□□□ -0.19
USHBP1-202ENST00000324554 LIAT1Q6ZQX7 453 aa13.84□□□□□ -0.19
USHBP1-202ENST00000324554 LINC00696Q6ZRV3 163 aa13.84□□□□□ -0.19
USHBP1-202ENST00000324554 ZNF611Q8N823 705 aa13.84□□□□□ -0.19
USHBP1-202ENST00000324554 LRTM2Q8N967 370 aa13.84□□□□□ -0.19
USHBP1-202ENST00000324554 PLA2G3Q9NZ20 509 aa13.84□□□□□ -0.19
USHBP1-202ENST00000324554 NOSIPQ9Y314 301 aaKnown RBP13.84□□□□□ -0.19
USHBP1-202ENST00000324554 URB1O60287 2271 aaKnown RBP13.84□□□□□ -0.19
USHBP1-202ENST00000324554 ITGA3P26006 1051 aa13.83□□□□□ -0.19
USHBP1-202ENST00000324554 NHLH2Q02577 135 aa13.83□□□□□ -0.19
USHBP1-202ENST00000324554 ZNF616Q08AN1 781 aa13.83□□□□□ -0.19
USHBP1-202ENST00000324554 HABP2Q14520 560 aaPredicted RBP13.83□□□□□ -0.19
USHBP1-202ENST00000324554 NRN1LQ496H8 165 aa13.83□□□□□ -0.19
USHBP1-202ENST00000324554 COLCA1Q6ZS62 124 aa13.83□□□□□ -0.19
USHBP1-202ENST00000324554 BATF2Q8N1L9 274 aa13.83□□□□□ -0.19
USHBP1-202ENST00000324554 MOB3AQ96BX8 217 aa13.83□□□□□ -0.19
USHBP1-202ENST00000324554 C14orf79Q96F83 325 aa13.83□□□□□ -0.19
USHBP1-202ENST00000324554 SUCNR1Q9BXA5 334 aa13.83□□□□□ -0.19
USHBP1-202ENST00000324554 HES7Q9BYE0 225 aa13.83□□□□□ -0.19
USHBP1-202ENST00000324554 RNF122Q9H9V4 155 aa13.83□□□□□ -0.19
USHBP1-202ENST00000324554 SMCO4Q9NRQ5 59 aa13.83□□□□□ -0.19
USHBP1-202ENST00000324554 BOKQ9UMX3 212 aaPredicted RBP13.83□□□□□ -0.19
USHBP1-202ENST00000324554 PQLC2LA1A4F0 135 aa13.83□□□□□ -0.2
USHBP1-202ENST00000324554 MRPL33O75394 65 aaKnown RBP13.83□□□□□ -0.2
USHBP1-202ENST00000324554 SEC11BP0C7V7 166 aa13.83□□□□□ -0.2
USHBP1-202ENST00000324554 NPBWR2P48146 333 aa13.83□□□□□ -0.2
USHBP1-202ENST00000324554 SLC25A26Q70HW3 274 aa13.83□□□□□ -0.2
USHBP1-202ENST00000324554 HPSE2Q8WWQ2 592 aa13.83□□□□□ -0.2
USHBP1-202ENST00000324554 PARPBPQ9NWS1 579 aa13.83□□□□□ -0.2
USHBP1-202ENST00000324554 KPTNQ9Y664 436 aa13.83□□□□□ -0.2
USHBP1-202ENST00000324554 IGKV3D-15A0A087WSY6 115 aa13.82□□□□□ -0.2
USHBP1-202ENST00000324554 MED19A0JLT2 244 aaPredicted RBP13.82□□□□□ -0.2
USHBP1-202ENST00000324554 GPR137BO60478 399 aa13.82□□□□□ -0.2
USHBP1-202ENST00000324554 OR7C1O76099 320 aaPredicted RBP13.82□□□□□ -0.2
USHBP1-202ENST00000324554 FUT3P21217 361 aa13.82□□□□□ -0.2
USHBP1-202ENST00000324554 P2RY1P47900 373 aa13.82□□□□□ -0.2
USHBP1-202ENST00000324554 SFT2D1Q8WV19 159 aa13.82□□□□□ -0.2
USHBP1-202ENST00000324554 SIGLEC12Q96PQ1 595 aa13.82□□□□□ -0.2
USHBP1-202ENST00000324554 GINS3Q9BRX5 216 aa13.82□□□□□ -0.2
USHBP1-202ENST00000324554 ZNF442Q9H7R0 627 aa13.82□□□□□ -0.2
USHBP1-202ENST00000324554 SLC7A10Q9NS82 523 aa13.82□□□□□ -0.2
USHBP1-202ENST00000324554 PRRC2CQ9Y520 2896 aaKnown RBP13.82□□□□□ -0.2
USHBP1-202ENST00000324554 DCHS1Q96JQ0 3298 aa13.82□□□□□ -0.2
USHBP1-202ENST00000324554 NEURL1O76050 574 aa13.82□□□□□ -0.2
USHBP1-202ENST00000324554 UCP2P55851 309 aa13.82□□□□□ -0.2
USHBP1-202ENST00000324554 DCAF10Q5QP82 559 aa13.82□□□□□ -0.2
USHBP1-202ENST00000324554 TMEM211Q6ICI0 200 aa13.82□□□□□ -0.2
USHBP1-202ENST00000324554 FBXW12Q6X9E4 464 aa13.82□□□□□ -0.2
USHBP1-202ENST00000324554 VASH2Q86V25 355 aa13.82□□□□□ -0.2
USHBP1-202ENST00000324554 TP53RKQ96S44 253 aa13.82□□□□□ -0.2
USHBP1-202ENST00000324554 GPR87Q9BY21 358 aa13.82□□□□□ -0.2
USHBP1-202ENST00000324554 ZNF703Q9H7S9 590 aaPredicted RBP13.82□□□□□ -0.2
USHBP1-202ENST00000324554 RPS10P5Q9NQ39 176 aa13.82□□□□□ -0.2
USHBP1-202ENST00000324554 PTPRZ1P23471 2315 aaPredicted RBP13.81□□□□□ -0.2
USHBP1-202ENST00000324554 PHF1O43189 567 aaPredicted RBP13.81□□□□□ -0.2
USHBP1-202ENST00000324554 CELA3AP09093 270 aa13.81□□□□□ -0.2
USHBP1-202ENST00000324554 FOLR2P14207 255 aa13.81□□□□□ -0.2
USHBP1-202ENST00000324554 AADACP22760 399 aa13.81□□□□□ -0.2
USHBP1-202ENST00000324554 DUSP1P28562 367 aa13.81□□□□□ -0.2
USHBP1-202ENST00000324554 LHX2P50458 406 aa13.81□□□□□ -0.2
USHBP1-202ENST00000324554 ASCL1P50553 236 aa13.81□□□□□ -0.2
USHBP1-202ENST00000324554 UCP3P55916 312 aa13.81□□□□□ -0.2
USHBP1-202ENST00000324554 ARF1P84077 181 aaKnown RBP13.81□□□□□ -0.2
USHBP1-202ENST00000324554 SRYQ05066 204 aa13.81□□□□□ -0.2
USHBP1-202ENST00000324554 GUK1Q16774 197 aa13.81□□□□□ -0.2
USHBP1-202ENST00000324554 C9orf135Q5VTT2 229 aa13.81□□□□□ -0.2
USHBP1-202ENST00000324554 HIST1H2BAQ96A08 127 aa13.81□□□□□ -0.2
USHBP1-202ENST00000324554 IP6K3Q96PC2 410 aa13.81□□□□□ -0.2
USHBP1-202ENST00000324554 EGLN1Q9GZT9 426 aa13.81□□□□□ -0.2
USHBP1-202ENST00000324554 ATPIF1Q9UII2 106 aa13.81□□□□□ -0.2
USHBP1-202ENST00000324554 BORCS7-ASMTA0A0B4J1R7 106 aa13.81□□□□□ -0.2
USHBP1-202ENST00000324554 C21orf140B9A014 251 aa13.81□□□□□ -0.2
USHBP1-202ENST00000324554 PAX6P26367 422 aa13.81□□□□□ -0.2
USHBP1-202ENST00000324554 GLP1RP43220 463 aa13.81□□□□□ -0.2
USHBP1-202ENST00000324554 CTAG1AP78358 180 aa13.81□□□□□ -0.2
USHBP1-202ENST00000324554 AWAT1Q58HT5 328 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms