RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 PLA2G7Q13093 441 aa12.27□□□□□ -0.44
CD48-203ENST00000613788 CNPY1Q3B7I2 92 aa12.27□□□□□ -0.44
CD48-203ENST00000613788 UBE2NLQ5JXB2 153 aa12.27□□□□□ -0.44
CD48-203ENST00000613788 Q6P435 159 aa12.27□□□□□ -0.44
CD48-203ENST00000613788 NLRC3Q7RTR2 1065 aa12.27□□□□□ -0.44
CD48-203ENST00000613788 PPP1R35Q8TAP8 253 aa12.27□□□□□ -0.44
CD48-203ENST00000613788 RAB40AQ8WXH6 277 aa12.27□□□□□ -0.44
CD48-203ENST00000613788 S100A16Q96FQ6 103 aaKnown RBP12.27□□□□□ -0.44
CD48-203ENST00000613788 NXF2Q9GZY0 626 aaKnown RBP12.27□□□□□ -0.44
CD48-203ENST00000613788 MMP27Q9H306 513 aa12.27□□□□□ -0.44
CD48-203ENST00000613788 PATZ1Q9HBE1 687 aaKnown RBP12.27□□□□□ -0.44
CD48-203ENST00000613788 A3GALT2U3KPV4 340 aa12.27□□□□□ -0.44
CD48-203ENST00000613788 ANKRD17O75179 2603 aaKnown RBP12.27□□□□□ -0.44
CD48-203ENST00000613788 CEACAM18A8MTB9 384 aa12.27□□□□□ -0.45
CD48-203ENST00000613788 SIGLEC5O15389 551 aa12.27□□□□□ -0.45
CD48-203ENST00000613788 APOA1P02647 267 aa12.27□□□□□ -0.45
CD48-203ENST00000613788 HEXAP06865 529 aa12.27□□□□□ -0.45
CD48-203ENST00000613788 RPS2P15880 293 aaKnown RBP12.27□□□□□ -0.45
CD48-203ENST00000613788 AMY2BP19961 511 aa12.27□□□□□ -0.45
CD48-203ENST00000613788 CEBPDP49716 269 aaPredicted RBP12.27□□□□□ -0.45
CD48-203ENST00000613788 VEGFCP49767 419 aa12.27□□□□□ -0.45
CD48-203ENST00000613788 COL10A1Q03692 680 aa12.27□□□□□ -0.45
CD48-203ENST00000613788 PDCD1Q15116 288 aa12.27□□□□□ -0.45
CD48-203ENST00000613788 ATAD3CQ5T2N8 411 aa12.27□□□□□ -0.45
CD48-203ENST00000613788 RAB12Q6IQ22 244 aa12.27□□□□□ -0.45
CD48-203ENST00000613788 LYPD2Q6UXB3 125 aa12.27□□□□□ -0.45
CD48-203ENST00000613788 NEIL1Q96FI4 390 aaPredicted RBP12.27□□□□□ -0.45
CD48-203ENST00000613788 GAFA1Q96PS6 74 aa12.27□□□□□ -0.45
CD48-203ENST00000613788 NEDD4LQ96PU5 975 aa12.27□□□□□ -0.45
CD48-203ENST00000613788 NICN1Q9BSH3 213 aa12.27□□□□□ -0.45
CD48-203ENST00000613788 C6orf62Q9GZU0 229 aaPredicted RBP12.27□□□□□ -0.45
CD48-203ENST00000613788 ABCG5Q9H222 651 aa12.27□□□□□ -0.45
CD48-203ENST00000613788 NARFLQ9H6Q4 476 aa12.27□□□□□ -0.45
CD48-203ENST00000613788 DIABLOQ9NR28 239 aa12.27□□□□□ -0.45
CD48-203ENST00000613788 ADAM30Q9UKF2 790 aa12.27□□□□□ -0.45
CD48-203ENST00000613788 ITPR2Q14571 2701 aa12.26□□□□□ -0.45
CD48-203ENST00000613788 A0A0A6YYH2 397 aa12.26□□□□□ -0.45
CD48-203ENST00000613788 A6NJ64 397 aa12.26□□□□□ -0.45
CD48-203ENST00000613788 SIRPB1O00241 398 aa12.26□□□□□ -0.45
CD48-203ENST00000613788 NDUFB3O43676 98 aa12.26□□□□□ -0.45
CD48-203ENST00000613788 GLAP06280 429 aa12.26□□□□□ -0.45
CD48-203ENST00000613788 WNT2P09544 360 aa12.26□□□□□ -0.45
CD48-203ENST00000613788 FUT3P21217 361 aa12.26□□□□□ -0.45
CD48-203ENST00000613788 USF1P22415 310 aaPredicted RBP12.26□□□□□ -0.45
CD48-203ENST00000613788 BLVRBP30043 206 aaPredicted RBP12.26□□□□□ -0.45
CD48-203ENST00000613788 KRTAP1-3Q8IUG1 177 aa12.26□□□□□ -0.45
CD48-203ENST00000613788 ASCC1Q8N9N2 400 aaKnown RBP12.26□□□□□ -0.45
CD48-203ENST00000613788 OR8B3Q8NGG8 313 aa12.26□□□□□ -0.45
CD48-203ENST00000613788 OR5D13Q8NGL4 314 aa12.26□□□□□ -0.45
CD48-203ENST00000613788 CLDND2Q8NHS1 167 aa12.26□□□□□ -0.45
CD48-203ENST00000613788 RAB39BQ96DA2 213 aa12.26□□□□□ -0.45
CD48-203ENST00000613788 SLC25A38Q96DW6 304 aa12.26□□□□□ -0.45
CD48-203ENST00000613788 SNX22Q96L94 193 aa12.26□□□□□ -0.45
CD48-203ENST00000613788 Q96MF0 132 aa12.26□□□□□ -0.45
CD48-203ENST00000613788 OR8B2Q96RD0 313 aa12.26□□□□□ -0.45
CD48-203ENST00000613788 FAM234AQ9H0X4 552 aa12.26□□□□□ -0.45
CD48-203ENST00000613788 ITGB1BP2Q9UKP3 347 aa12.26□□□□□ -0.45
CD48-203ENST00000613788 MAB21L2Q9Y586 359 aa12.26□□□□□ -0.45
CD48-203ENST00000613788 PEX16Q9Y5Y5 336 aa12.26□□□□□ -0.45
CD48-203ENST00000613788 PDZD2O15018 2839 aa12.25□□□□□ -0.45
CD48-203ENST00000613788 A0A0A6YYD4 124 aa12.25□□□□□ -0.45
CD48-203ENST00000613788 MCRIP1C9JLW8 97 aa12.25□□□□□ -0.45
CD48-203ENST00000613788 SLC33A1O00400 549 aaPredicted RBP12.25□□□□□ -0.45
CD48-203ENST00000613788 CTDSP2O14595 271 aa12.25□□□□□ -0.45
CD48-203ENST00000613788 SOCS1O15524 211 aa12.25□□□□□ -0.45
CD48-203ENST00000613788 HPGDSO60760 199 aa12.25□□□□□ -0.45
CD48-203ENST00000613788 PDCD6O75340 191 aa12.25□□□□□ -0.45
CD48-203ENST00000613788 TFF1P04155 84 aa12.25□□□□□ -0.45
CD48-203ENST00000613788 RBM39Q14498 530 aaKnown RBP12.25□□□□□ -0.45
CD48-203ENST00000613788 ARL6IP1Q15041 203 aa12.25□□□□□ -0.45
CD48-203ENST00000613788 LRRC10Q5BKY1 277 aa12.25□□□□□ -0.45
CD48-203ENST00000613788 Q6ZTK2 550 aa12.25□□□□□ -0.45
CD48-203ENST00000613788 CMTM4Q8IZR5 234 aa12.25□□□□□ -0.45
CD48-203ENST00000613788 FAM216BQ8N7L0 139 aa12.25□□□□□ -0.45
CD48-203ENST00000613788 ZNRF1Q8ND25 227 aa12.25□□□□□ -0.45
CD48-203ENST00000613788 OR10R2Q8NGX6 335 aa12.25□□□□□ -0.45
CD48-203ENST00000613788 PLEKHJ1Q9NW61 149 aa12.25□□□□□ -0.45
CD48-203ENST00000613788 METRNQ9UJH8 293 aa12.25□□□□□ -0.45
CD48-203ENST00000613788 HSF4Q9ULV5 492 aa12.25□□□□□ -0.45
CD48-203ENST00000613788 TRAV24A0A0B4J272 114 aa12.24□□□□□ -0.45
CD48-203ENST00000613788 IGHV4-61A0A0C4DH41 118 aa12.24□□□□□ -0.45
CD48-203ENST00000613788 FAM25AB3EWG3 89 aa12.24□□□□□ -0.45
CD48-203ENST00000613788 FAM25CB3EWG5 89 aa12.24□□□□□ -0.45
CD48-203ENST00000613788 FAM25GB3EWG6 89 aa12.24□□□□□ -0.45
CD48-203ENST00000613788 F5H0A9 414 aaPredicted RBP12.24□□□□□ -0.45
CD48-203ENST00000613788 K7N7A8 449 aa12.24□□□□□ -0.45
CD48-203ENST00000613788 RAB27BO00194 218 aa12.24□□□□□ -0.45
CD48-203ENST00000613788 ZNF737O75373 536 aa12.24□□□□□ -0.45
CD48-203ENST00000613788 IGHV2-5P01817 119 aa12.24□□□□□ -0.45
CD48-203ENST00000613788 TK1P04183 234 aa12.24□□□□□ -0.45
CD48-203ENST00000613788 S100A5P33763 92 aa12.24□□□□□ -0.45
CD48-203ENST00000613788 NPY4RP50391 375 aa12.24□□□□□ -0.45
CD48-203ENST00000613788 LMO4P61968 165 aa12.24□□□□□ -0.45
CD48-203ENST00000613788 PAN3Q58A45 887 aaKnown RBP12.24□□□□□ -0.45
CD48-203ENST00000613788 SIGIRRQ6IA17 410 aa12.24□□□□□ -0.45
CD48-203ENST00000613788 METAP1DQ6UB28 335 aaPredicted RBP12.24□□□□□ -0.45
CD48-203ENST00000613788 BIVMQ86UB2 503 aa12.24□□□□□ -0.45
CD48-203ENST00000613788 SUMF2Q8NBJ7 301 aa12.24□□□□□ -0.45
CD48-203ENST00000613788 TMEM185AQ8NFB2 350 aa12.24□□□□□ -0.45
CD48-203ENST00000613788 RAB3CQ96E17 227 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms