RNA–Protein interactions for RNA: ENST00000550828.1

ERBB3-215, Transcript of erb-b2 receptor tyrosine kinase 3, human

TSL 1 (best)

Gene ERBB3, Length 266 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ERBB3-215	ENST00000550828	IL13RA2	Q14627	380 aa		11.23	□□□□□ -0.61
ERBB3-215	ENST00000550828	TAF9	Q16594	264 aa		11.23	□□□□□ -0.61
ERBB3-215	ENST00000550828	ZNF841	Q6ZN19	808 aa		11.23	□□□□□ -0.61
ERBB3-215	ENST00000550828	PEG10	Q86TG7	708 aa	Known RBP	11.23	□□□□□ -0.61
ERBB3-215	ENST00000550828	MUC20	Q8N307	709 aa	Predicted RBP	11.23	□□□□□ -0.61
ERBB3-215	ENST00000550828	SDSL	Q96GA7	329 aa		11.23	□□□□□ -0.61
ERBB3-215	ENST00000550828	TM2D1	Q9BX74	207 aa		11.23	□□□□□ -0.61
ERBB3-215	ENST00000550828	SELENOI	Q9C0D9	397 aa		11.23	□□□□□ -0.61
ERBB3-215	ENST00000550828	PATZ1	Q9HBE1	687 aa	Known RBP	11.23	□□□□□ -0.61
ERBB3-215	ENST00000550828	CCDC59	Q9P031	241 aa	Known RBP	11.23	□□□□□ -0.61
ERBB3-215	ENST00000550828	ST3GAL6	Q9Y274	331 aa		11.23	□□□□□ -0.61
ERBB3-215	ENST00000550828	TRAV24	A0A0B4J272	114 aa		11.22	□□□□□ -0.61
ERBB3-215	ENST00000550828	SIRPB1	O00241	398 aa		11.22	□□□□□ -0.61
ERBB3-215	ENST00000550828	SIGLEC5	O15389	551 aa		11.22	□□□□□ -0.61
ERBB3-215	ENST00000550828	PSPN	O60542	156 aa		11.22	□□□□□ -0.61
ERBB3-215	ENST00000550828	OR2H2	O95918	312 aa		11.22	□□□□□ -0.61
ERBB3-215	ENST00000550828	CSTB	P04080	98 aa	Known RBP	11.22	□□□□□ -0.61
ERBB3-215	ENST00000550828	GTF2F2	P13984	249 aa		11.22	□□□□□ -0.61
ERBB3-215	ENST00000550828	GABRA2	P47869	451 aa		11.22	□□□□□ -0.61
ERBB3-215	ENST00000550828	RORC	P51449	518 aa		11.22	□□□□□ -0.61
ERBB3-215	ENST00000550828	GPR176	Q14439	515 aa		11.22	□□□□□ -0.61
ERBB3-215	ENST00000550828	MOGAT2	Q3SYC2	334 aa		11.22	□□□□□ -0.61
ERBB3-215	ENST00000550828	SPIN3	Q5JUX0	258 aa		11.22	□□□□□ -0.61
ERBB3-215	ENST00000550828	C17orf107	Q6ZR85	190 aa		11.22	□□□□□ -0.61
ERBB3-215	ENST00000550828	SPIC	Q8N5J4	248 aa		11.22	□□□□□ -0.61
ERBB3-215	ENST00000550828	ZNRF1	Q8ND25	227 aa		11.22	□□□□□ -0.61
ERBB3-215	ENST00000550828	KCNG3	Q8TAE7	436 aa		11.22	□□□□□ -0.61
ERBB3-215	ENST00000550828	DGCR14	Q96DF8	476 aa	Known RBP	11.22	□□□□□ -0.61
ERBB3-215	ENST00000550828	S100A13	Q99584	98 aa		11.22	□□□□□ -0.61
ERBB3-215	ENST00000550828	DCUN1D5	Q9BTE7	237 aa		11.22	□□□□□ -0.61
ERBB3-215	ENST00000550828	TMEM59	Q9BXS4	323 aa		11.22	□□□□□ -0.61
ERBB3-215	ENST00000550828	REG4	Q9BYZ8	158 aa		11.22	□□□□□ -0.61
ERBB3-215	ENST00000550828	SLIRP	Q9GZT3	109 aa	Known RBP	11.22	□□□□□ -0.61
ERBB3-215	ENST00000550828	ZNF665	Q9H7R5	613 aa		11.22	□□□□□ -0.61
ERBB3-215	ENST00000550828	SEBOX	Q9HB31	216 aa	Predicted RBP	11.22	□□□□□ -0.61
ERBB3-215	ENST00000550828	NDUFA13	Q9P0J0	144 aa		11.22	□□□□□ -0.61
ERBB3-215	ENST00000550828	KAAG1	Q9UBP8	84 aa		11.22	□□□□□ -0.61
ERBB3-215	ENST00000550828	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	11.21	□□□□□ -0.61
ERBB3-215	ENST00000550828	FAM157A	C9JC47	383 aa		11.21	□□□□□ -0.61
ERBB3-215	ENST00000550828	SLC33A1	O00400	549 aa	Predicted RBP	11.21	□□□□□ -0.61
ERBB3-215	ENST00000550828	TMPRSS2	O15393	492 aa		11.21	□□□□□ -0.61
ERBB3-215	ENST00000550828	SOCS1	O15524	211 aa		11.21	□□□□□ -0.61
ERBB3-215	ENST00000550828	ZNF780A	O75290	641 aa	Predicted RBP	11.21	□□□□□ -0.61
ERBB3-215	ENST00000550828	RPS2	P15880	293 aa	Known RBP	11.21	□□□□□ -0.61
ERBB3-215	ENST00000550828	RAB6A	P20340	208 aa		11.21	□□□□□ -0.61
ERBB3-215	ENST00000550828	USF1	P22415	310 aa	Predicted RBP	11.21	□□□□□ -0.61
ERBB3-215	ENST00000550828	OR3A1	P47881	315 aa		11.21	□□□□□ -0.61
ERBB3-215	ENST00000550828	BMX	P51813	675 aa		11.21	□□□□□ -0.61
ERBB3-215	ENST00000550828	CAPZA1	P52907	286 aa		11.21	□□□□□ -0.61
ERBB3-215	ENST00000550828	LOXL1	Q08397	574 aa	Predicted RBP	11.21	□□□□□ -0.61
ERBB3-215	ENST00000550828	IKZF1	Q13422	519 aa		11.21	□□□□□ -0.61
ERBB3-215	ENST00000550828	FAM89B	Q8N5H3	189 aa		11.21	□□□□□ -0.61
ERBB3-215	ENST00000550828	OR4S1	Q8NGB4	309 aa		11.21	□□□□□ -0.61
ERBB3-215	ENST00000550828	MRPS24	Q96EL2	167 aa	Known RBP	11.21	□□□□□ -0.61
ERBB3-215	ENST00000550828	NEIL1	Q96FI4	390 aa	Predicted RBP	11.21	□□□□□ -0.61
ERBB3-215	ENST00000550828	SHARPIN	Q9H0F6	387 aa		11.21	□□□□□ -0.61
ERBB3-215	ENST00000550828	CST11	Q9H112	138 aa		11.21	□□□□□ -0.61
ERBB3-215	ENST00000550828	DNTTIP1	Q9H147	329 aa		11.21	□□□□□ -0.61
ERBB3-215	ENST00000550828	ABRACL	Q9P1F3	81 aa		11.21	□□□□□ -0.61
ERBB3-215	ENST00000550828	RCC2	Q9P258	522 aa	Known RBP	11.21	□□□□□ -0.61
ERBB3-215	ENST00000550828	RAB22A	Q9UL26	194 aa		11.21	□□□□□ -0.61
ERBB3-215	ENST00000550828	CSPG4	Q6UVK1	2322 aa		11.21	□□□□□ -0.62
ERBB3-215	ENST00000550828	NIPBL	Q6KC79	2804 aa	eCLIP	11.21	□□□□□ -0.62
ERBB3-215	ENST00000550828	NKX6-3	A6NJ46	265 aa		11.2	□□□□□ -0.62
ERBB3-215	ENST00000550828		H7C1Q1	480 aa		11.2	□□□□□ -0.62
ERBB3-215	ENST00000550828	DVL1	O14640	695 aa		11.2	□□□□□ -0.62
ERBB3-215	ENST00000550828	PHF1	O43189	567 aa	Predicted RBP	11.2	□□□□□ -0.62
ERBB3-215	ENST00000550828	OR7C1	O76099	320 aa	Predicted RBP	11.2	□□□□□ -0.62
ERBB3-215	ENST00000550828	GABRR1	P24046	479 aa		11.2	□□□□□ -0.62
ERBB3-215	ENST00000550828	LMO1	P25800	156 aa		11.2	□□□□□ -0.62
ERBB3-215	ENST00000550828	ZFP36	P26651	326 aa	Known RBP	11.2	□□□□□ -0.62
ERBB3-215	ENST00000550828	CHAT	P28329	748 aa		11.2	□□□□□ -0.62
ERBB3-215	ENST00000550828	TMEM50B	P56557	158 aa		11.2	□□□□□ -0.62
ERBB3-215	ENST00000550828	IL13RA1	P78552	427 aa		11.2	□□□□□ -0.62
ERBB3-215	ENST00000550828	SCN1B	Q07699	218 aa		11.2	□□□□□ -0.62
ERBB3-215	ENST00000550828	MPV17L	Q2QL34	196 aa		11.2	□□□□□ -0.62
ERBB3-215	ENST00000550828	BRICD5	Q6PL45	260 aa		11.2	□□□□□ -0.62
ERBB3-215	ENST00000550828	CROCCP3	Q8IVE0	287 aa		11.2	□□□□□ -0.62
ERBB3-215	ENST00000550828	KCTD12	Q96CX2	325 aa	Known RBP	11.2	□□□□□ -0.62
ERBB3-215	ENST00000550828	CHST6	Q9GZX3	395 aa		11.2	□□□□□ -0.62
ERBB3-215	ENST00000550828	PPA2	Q9H2U2	334 aa		11.2	□□□□□ -0.62
ERBB3-215	ENST00000550828	MIXL1	Q9H2W2	232 aa		11.2	□□□□□ -0.62
ERBB3-215	ENST00000550828	IFT22	Q9H7X7	185 aa		11.2	□□□□□ -0.62
ERBB3-215	ENST00000550828	RHBDL2	Q9NX52	303 aa		11.2	□□□□□ -0.62
ERBB3-215	ENST00000550828	MIOX	Q9UGB7	285 aa		11.2	□□□□□ -0.62
ERBB3-215	ENST00000550828	SPATA2	Q9UM82	520 aa		11.2	□□□□□ -0.62
ERBB3-215	ENST00000550828	ETV7	Q9Y603	341 aa		11.2	□□□□□ -0.62
ERBB3-215	ENST00000550828	TLN2	Q9Y4G6	2542 aa		11.2	□□□□□ -0.62
ERBB3-215	ENST00000550828	C22orf46	C9J442	243 aa		11.19	□□□□□ -0.62
ERBB3-215	ENST00000550828		K7N7A8	449 aa		11.19	□□□□□ -0.62
ERBB3-215	ENST00000550828	RAB27B	O00194	218 aa		11.19	□□□□□ -0.62
ERBB3-215	ENST00000550828	HSPB6	O14558	160 aa		11.19	□□□□□ -0.62
ERBB3-215	ENST00000550828	SH2D1B	O14796	132 aa		11.19	□□□□□ -0.62
ERBB3-215	ENST00000550828	DEGS1	O15121	323 aa		11.19	□□□□□ -0.62
ERBB3-215	ENST00000550828	NDUFA2	O43678	99 aa		11.19	□□□□□ -0.62
ERBB3-215	ENST00000550828	HPGDS	O60760	199 aa		11.19	□□□□□ -0.62
ERBB3-215	ENST00000550828	EIF4E	P06730	217 aa	Known RBP	11.19	□□□□□ -0.62
ERBB3-215	ENST00000550828	CHRM2	P08172	466 aa		11.19	□□□□□ -0.62
ERBB3-215	ENST00000550828	ZNF44	P15621	663 aa		11.19	□□□□□ -0.62
ERBB3-215	ENST00000550828	PITPNB	P48739	271 aa		11.19	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms