RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 EIF4EBP2Q13542 120 aaPredicted RBP3.66□□□□□ -1.82
USP54-206ENST00000433394 DMC1Q14565 340 aa3.66□□□□□ -1.82
USP54-206ENST00000433394 CDNFQ49AH0 187 aa3.66□□□□□ -1.82
USP54-206ENST00000433394 TMEM236Q5W0B7 351 aa3.66□□□□□ -1.82
USP54-206ENST00000433394 ZNF880Q6PDB4 577 aa3.66□□□□□ -1.82
USP54-206ENST00000433394 SYCE1Q8N0S2 351 aa3.66□□□□□ -1.82
USP54-206ENST00000433394 SYS1Q8N2H4 156 aa3.66□□□□□ -1.82
USP54-206ENST00000433394 RNF10Q8N5U6 811 aaKnown RBP3.66□□□□□ -1.82
USP54-206ENST00000433394 ZNF645Q8N7E2 425 aa3.66□□□□□ -1.82
USP54-206ENST00000433394 OR5T1Q8NG75 326 aa3.66□□□□□ -1.82
USP54-206ENST00000433394 NT5CQ8TCD5 201 aa3.66□□□□□ -1.82
USP54-206ENST00000433394 CIB1Q99828 191 aa3.66□□□□□ -1.82
USP54-206ENST00000433394 HINT2Q9BX68 163 aa3.66□□□□□ -1.82
USP54-206ENST00000433394 TBL1XR1Q9BZK7 514 aa3.66□□□□□ -1.82
USP54-206ENST00000433394 COA1Q9GZY4 146 aa3.66□□□□□ -1.82
USP54-206ENST00000433394 TNS1Q9HBL0 1735 aaKnown RBP3.66□□□□□ -1.82
USP54-206ENST00000433394 USP42Q9H9J4 1324 aaKnown RBP3.66□□□□□ -1.82
USP54-206ENST00000433394 RFX7Q2KHR2 1363 aa3.65□□□□□ -1.82
USP54-206ENST00000433394 C4AP0C0L4 1744 aa3.65□□□□□ -1.82
USP54-206ENST00000433394 IGKV1-27A0A075B6S5 117 aa3.65□□□□□ -1.83
USP54-206ENST00000433394 IGHV3-72A0A0B4J1Y9 119 aa3.65□□□□□ -1.83
USP54-206ENST00000433394 ERICH2A1L162 156 aa3.65□□□□□ -1.83
USP54-206ENST00000433394 ZNF207O43670 478 aaKnown RBP3.65□□□□□ -1.83
USP54-206ENST00000433394 VAPBO95292 243 aa3.65□□□□□ -1.83
USP54-206ENST00000433394 KIR3DL2P43630 455 aa3.65□□□□□ -1.83
USP54-206ENST00000433394 GPR4P46093 362 aa3.65□□□□□ -1.83
USP54-206ENST00000433394 VSNL1P62760 191 aa3.65□□□□□ -1.83
USP54-206ENST00000433394 SYT6Q5T7P8 510 aaPredicted RBP3.65□□□□□ -1.83
USP54-206ENST00000433394 SSX6Q7RTT6 188 aa3.65□□□□□ -1.83
USP54-206ENST00000433394 CD302Q8IX05 232 aa3.65□□□□□ -1.83
USP54-206ENST00000433394 DNAAF3Q8N9W5 541 aa3.65□□□□□ -1.83
USP54-206ENST00000433394 NECAP1Q8NC96 275 aa3.65□□□□□ -1.83
USP54-206ENST00000433394 RTN4IP1Q8WWV3 396 aaPredicted RBP3.65□□□□□ -1.83
USP54-206ENST00000433394 CCDC124Q96CT7 223 aaKnown RBP3.65□□□□□ -1.83
USP54-206ENST00000433394 FAM19A4Q96LR4 140 aa3.65□□□□□ -1.83
USP54-206ENST00000433394 RNF5Q99942 180 aa3.65□□□□□ -1.83
USP54-206ENST00000433394 RAB1BQ9H0U4 201 aa3.65□□□□□ -1.83
USP54-206ENST00000433394 CENPHQ9H3R5 247 aa3.65□□□□□ -1.83
USP54-206ENST00000433394 TMEM100Q9NV29 134 aa3.65□□□□□ -1.83
USP54-206ENST00000433394 RBFOX1Q9NWB1 397 aaKnown RBP3.65□□□□□ -1.83
USP54-206ENST00000433394 ENPP4Q9Y6X5 453 aa3.65□□□□□ -1.83
USP54-206ENST00000433394 NUP214P35658 2090 aaPredicted RBP3.65□□□□□ -1.83
USP54-206ENST00000433394 DOCK9Q9BZ29 2069 aa3.65□□□□□ -1.83
USP54-206ENST00000433394 AK9Q5TCS8 1911 aa3.65□□□□□ -1.83
USP54-206ENST00000433394 DDX60Q8IY21 1712 aaKnown RBP3.64□□□□□ -1.83
USP54-206ENST00000433394 ZNF850A8MQ14 1090 aa3.64□□□□□ -1.83
USP54-206ENST00000433394 RRP8O43159 456 aaKnown RBP3.64□□□□□ -1.83
USP54-206ENST00000433394 NIPSNAP2O75323 286 aa3.64□□□□□ -1.83
USP54-206ENST00000433394 CCNKO75909 580 aa3.64□□□□□ -1.83
USP54-206ENST00000433394 MAS1P04201 325 aa3.64□□□□□ -1.83
USP54-206ENST00000433394 HAAOP46952 286 aa3.64□□□□□ -1.83
USP54-206ENST00000433394 PSMD7P51665 324 aa3.64□□□□□ -1.83
USP54-206ENST00000433394 KRTAP12-2P59991 146 aa3.64□□□□□ -1.83
USP54-206ENST00000433394 SNCBQ16143 134 aa3.64□□□□□ -1.83
USP54-206ENST00000433394 UGT2A3Q6UWM9 527 aa3.64□□□□□ -1.83
USP54-206ENST00000433394 LGALS14Q8TCE9 139 aa3.64□□□□□ -1.83
USP54-206ENST00000433394 SMARCD1Q96GM5 515 aa3.64□□□□□ -1.83
USP54-206ENST00000433394 GOLPH3Q9H4A6 298 aa3.64□□□□□ -1.83
USP54-206ENST00000433394 CSNK1G1Q9HCP0 422 aa3.64□□□□□ -1.83
USP54-206ENST00000433394 CD300AQ9UGN4 299 aa3.64□□□□□ -1.83
USP54-206ENST00000433394 ORC6Q9Y5N6 252 aa3.64□□□□□ -1.83
USP54-206ENST00000433394 LRP5O75197 1615 aa3.63□□□□□ -1.83
USP54-206ENST00000433394 J3QT63 122 aa3.63□□□□□ -1.83
USP54-206ENST00000433394 K7ERQ8 282 aa3.63□□□□□ -1.83
USP54-206ENST00000433394 IGLV3-25P01717 112 aa3.63□□□□□ -1.83
USP54-206ENST00000433394 XIAPP98170 497 aa3.63□□□□□ -1.83
USP54-206ENST00000433394 ZNF816Q0VGE8 651 aaPredicted RBP3.63□□□□□ -1.83
USP54-206ENST00000433394 GNA13Q14344 377 aa3.63□□□□□ -1.83
USP54-206ENST00000433394 TOMM34Q15785 309 aaPredicted RBP3.63□□□□□ -1.83
USP54-206ENST00000433394 USF2Q15853 346 aaPredicted RBP3.63□□□□□ -1.83
USP54-206ENST00000433394 TTC32Q5I0X7 151 aa3.63□□□□□ -1.83
USP54-206ENST00000433394 RESP18Q5W5W9 173 aa3.63□□□□□ -1.83
USP54-206ENST00000433394 OR5M1Q8NGP8 315 aa3.63□□□□□ -1.83
USP54-206ENST00000433394 CLHC1Q8NHS4 586 aa3.63□□□□□ -1.83
USP54-206ENST00000433394 VAT1Q99536 393 aa3.63□□□□□ -1.83
USP54-206ENST00000433394 C1orf50Q9BV19 199 aa3.63□□□□□ -1.83
USP54-206ENST00000433394 TMED9Q9BVK6 235 aa3.63□□□□□ -1.83
USP54-206ENST00000433394 ZNF302Q9NR11 478 aa3.63□□□□□ -1.83
USP54-206ENST00000433394 SDHAF3Q9NRP4 125 aa3.63□□□□□ -1.83
USP54-206ENST00000433394 VAX2Q9UIW0 290 aa3.63□□□□□ -1.83
USP54-206ENST00000433394 FARSAQ9Y285 508 aaKnown RBP3.63□□□□□ -1.83
USP54-206ENST00000433394 NRXN2Q9P2S2 1712 aa3.63□□□□□ -1.83
USP54-206ENST00000433394 RAD50Q92878 1312 aa3.63□□□□□ -1.83
USP54-206ENST00000433394 DUOX1Q9NRD9 1551 aa3.63□□□□□ -1.83
USP54-206ENST00000433394 TUBGCP6Q96RT7 1819 aa3.63□□□□□ -1.83
USP54-206ENST00000433394 ARAP2Q8WZ64 1704 aa3.62□□□□□ -1.83
USP54-206ENST00000433394 IGHV1-3A0A0C4DH29 117 aa3.62□□□□□ -1.83
USP54-206ENST00000433394 A0A0G2JMP0 313 aa3.62□□□□□ -1.83
USP54-206ENST00000433394 A0A0X1KG70 313 aa3.62□□□□□ -1.83
USP54-206ENST00000433394 TVP23AA6NH52 213 aa3.62□□□□□ -1.83
USP54-206ENST00000433394 A8MWL6 223 aa3.62□□□□□ -1.83
USP54-206ENST00000433394 M0R1B8 84 aa3.62□□□□□ -1.83
USP54-206ENST00000433394 ZW10O43264 779 aa3.62□□□□□ -1.83
USP54-206ENST00000433394 CCDC22O60826 627 aa3.62□□□□□ -1.83
USP54-206ENST00000433394 KLHL2O95198 593 aa3.62□□□□□ -1.83
USP54-206ENST00000433394 RCBTB2O95199 551 aa3.62□□□□□ -1.83
USP54-206ENST00000433394 MPZL1O95297 269 aa3.62□□□□□ -1.83
USP54-206ENST00000433394 WISP3O95389 354 aaPredicted RBP3.62□□□□□ -1.83
USP54-206ENST00000433394 GIMD1P0DJR0 217 aa3.62□□□□□ -1.83
USP54-206ENST00000433394 HLA-GP17693 338 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms