RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 MALSU1Q96EH3 234 aa17.56■□□□□ 0.4
CCDC28B-201ENST00000373602 RDH12Q96NR8 316 aa17.56■□□□□ 0.4
CCDC28B-201ENST00000373602 PDCD1LG2Q9BQ51 273 aa17.56■□□□□ 0.4
CCDC28B-201ENST00000373602 COMMD4Q9H0A8 199 aa17.56■□□□□ 0.4
CCDC28B-201ENST00000373602 MMP27Q9H306 513 aa17.56■□□□□ 0.4
CCDC28B-201ENST00000373602 RANBP3Q9H6Z4 567 aaPredicted RBP17.56■□□□□ 0.4
CCDC28B-201ENST00000373602 EXOSC4Q9NPD3 245 aaKnown RBP17.56■□□□□ 0.4
CCDC28B-201ENST00000373602 SMPD3Q9NY59 655 aaPredicted RBP17.56■□□□□ 0.4
CCDC28B-201ENST00000373602 GSTK1Q9Y2Q3 226 aa17.56■□□□□ 0.4
CCDC28B-201ENST00000373602 SESN1Q9Y6P5 492 aa17.56■□□□□ 0.4
CCDC28B-201ENST00000373602 MEGF11A6BM72 1044 aa17.55■□□□□ 0.4
CCDC28B-201ENST00000373602 SIRPB1O00241 398 aa17.55■□□□□ 0.4
CCDC28B-201ENST00000373602 CHST1O43916 411 aa17.55■□□□□ 0.4
CCDC28B-201ENST00000373602 WBP4O75554 376 aaKnown RBP17.55■□□□□ 0.4
CCDC28B-201ENST00000373602 OR2H2O95918 312 aa17.55■□□□□ 0.4
CCDC28B-201ENST00000373602 LIMS3P0CW19 117 aa17.55■□□□□ 0.4
CCDC28B-201ENST00000373602 LIMS4P0CW20 117 aa17.55■□□□□ 0.4
CCDC28B-201ENST00000373602 LMO1P25800 156 aa17.55■□□□□ 0.4
CCDC28B-201ENST00000373602 GBX2P52951 348 aaPredicted RBP17.55■□□□□ 0.4
CCDC28B-201ENST00000373602 P2RX3P56373 397 aa17.55■□□□□ 0.4
CCDC28B-201ENST00000373602 ZNF555Q8NEP9 628 aa17.55■□□□□ 0.4
CCDC28B-201ENST00000373602 OR5D14Q8NGL3 314 aa17.55■□□□□ 0.4
CCDC28B-201ENST00000373602 OR4C13Q8NGP0 309 aa17.55■□□□□ 0.4
CCDC28B-201ENST00000373602 JAM3Q9BX67 310 aa17.55■□□□□ 0.4
CCDC28B-201ENST00000373602 FGF20Q9NP95 211 aaPredicted RBP17.55■□□□□ 0.4
CCDC28B-201ENST00000373602 WNK1Q9H4A3 2382 aa17.55■□□□□ 0.4
CCDC28B-201ENST00000373602 KCNAB3O43448 404 aa17.54■□□□□ 0.4
CCDC28B-201ENST00000373602 SULT1B1O43704 296 aa17.54■□□□□ 0.4
CCDC28B-201ENST00000373602 EFNB2P52799 333 aa17.54■□□□□ 0.4
CCDC28B-201ENST00000373602 ZP1P60852 638 aa17.54■□□□□ 0.4
CCDC28B-201ENST00000373602 SSX2Q16385 188 aa17.54■□□□□ 0.4
CCDC28B-201ENST00000373602 ZSCAN26Q16670 478 aa17.54■□□□□ 0.4
CCDC28B-201ENST00000373602 CDCA4Q9BXL8 241 aa17.54■□□□□ 0.4
CCDC28B-201ENST00000373602 DHDHQ9UQ10 334 aa17.54■□□□□ 0.4
CCDC28B-201ENST00000373602 SIGLEC9Q9Y336 463 aa17.54■□□□□ 0.4
CCDC28B-201ENST00000373602 UBE2J1Q9Y385 318 aaPredicted RBP17.54■□□□□ 0.4
CCDC28B-201ENST00000373602 PCDHGB5Q9Y5G0 923 aa17.54■□□□□ 0.4
CCDC28B-201ENST00000373602 HCKP08631 526 aa17.53■□□□□ 0.4
CCDC28B-201ENST00000373602 DYNC1I2Q13409 638 aaKnown RBP17.53■□□□□ 0.4
CCDC28B-201ENST00000373602 KISS1Q15726 138 aa17.53■□□□□ 0.4
CCDC28B-201ENST00000373602 FAM189A2Q15884 450 aa17.53■□□□□ 0.4
CCDC28B-201ENST00000373602 SMN1Q16637 294 aaKnown RBP17.53■□□□□ 0.4
CCDC28B-201ENST00000373602 PLA1AQ53H76 456 aa17.53■□□□□ 0.4
CCDC28B-201ENST00000373602 C11orf88Q6PI97 169 aa17.53■□□□□ 0.4
CCDC28B-201ENST00000373602 TSEN15Q8WW01 171 aaKnown RBP17.53■□□□□ 0.4
CCDC28B-201ENST00000373602 NPFFR1Q9GZQ6 430 aa17.53■□□□□ 0.4
CCDC28B-201ENST00000373602 TMEM133Q9H2Q1 129 aa17.53■□□□□ 0.4
CCDC28B-201ENST00000373602 TCF19Q9Y242 345 aa17.53■□□□□ 0.4
CCDC28B-201ENST00000373602 IGHV2-26A0A0B4J1V2 119 aa17.52■□□□□ 0.4
CCDC28B-201ENST00000373602 FUOMA2VDF0 154 aa17.52■□□□□ 0.4
CCDC28B-201ENST00000373602 TMEM225BP0DP42 221 aa17.52■□□□□ 0.4
CCDC28B-201ENST00000373602 RAB13P51153 203 aa17.52■□□□□ 0.4
CCDC28B-201ENST00000373602 GTF2A1P52655 376 aaPredicted RBP17.52■□□□□ 0.4
CCDC28B-201ENST00000373602 MINOS1Q5TGZ0 78 aa17.52■□□□□ 0.4
CCDC28B-201ENST00000373602 Q6P435 159 aa17.52■□□□□ 0.4
CCDC28B-201ENST00000373602 TRAPPC6BQ86SZ2 158 aa17.52■□□□□ 0.4
CCDC28B-201ENST00000373602 OR2T6Q8NHC8 308 aa17.52■□□□□ 0.4
CCDC28B-201ENST00000373602 CLEC7AQ9BXN2 247 aa17.52■□□□□ 0.4
CCDC28B-201ENST00000373602 ABCB10Q9NRK6 738 aa17.52■□□□□ 0.4
CCDC28B-201ENST00000373602 MINOS1-NBL1R4GNA1 71 aa17.52■□□□□ 0.4
CCDC28B-201ENST00000373602 A0A0G2JK05 382 aa17.51■□□□□ 0.39
CCDC28B-201ENST00000373602 A6NDX4 124 aa17.51■□□□□ 0.39
CCDC28B-201ENST00000373602 MMP23AO75900 390 aa17.51■□□□□ 0.39
CCDC28B-201ENST00000373602 ZNF44P15621 663 aa17.51■□□□□ 0.39
CCDC28B-201ENST00000373602 DCKP27707 260 aa17.51■□□□□ 0.39
CCDC28B-201ENST00000373602 DYNLT3P51808 116 aa17.51■□□□□ 0.39
CCDC28B-201ENST00000373602 IL18R1Q13478 541 aa17.51■□□□□ 0.39
CCDC28B-201ENST00000373602 CCDC58Q4VC31 144 aa17.51■□□□□ 0.39
CCDC28B-201ENST00000373602 ZNF691Q5VV52 312 aa17.51■□□□□ 0.39
CCDC28B-201ENST00000373602 ZNF529Q6P280 563 aa17.51■□□□□ 0.39
CCDC28B-201ENST00000373602 CCBE1Q6UXH8 406 aaPredicted RBP17.51■□□□□ 0.39
CCDC28B-201ENST00000373602 DTX3Q8N9I9 347 aa17.51■□□□□ 0.39
CCDC28B-201ENST00000373602 CHST4Q8NCG5 386 aa17.51■□□□□ 0.39
CCDC28B-201ENST00000373602 RPS4Y2Q8TD47 263 aa17.51■□□□□ 0.39
CCDC28B-201ENST00000373602 RGP1Q92546 391 aaPredicted RBP17.51■□□□□ 0.39
CCDC28B-201ENST00000373602 CORO2AQ92828 525 aa17.51■□□□□ 0.39
CCDC28B-201ENST00000373602 STMN2Q93045 179 aa17.51■□□□□ 0.39
CCDC28B-201ENST00000373602 MEGF8Q7Z7M0 2845 aa17.51■□□□□ 0.39
CCDC28B-201ENST00000373602 TRGV10A0A0A0MS01 117 aa17.5■□□□□ 0.39
CCDC28B-201ENST00000373602 CSN2P05814 226 aa17.5■□□□□ 0.39
CCDC28B-201ENST00000373602 RAB3AP20336 220 aa17.5■□□□□ 0.39
CCDC28B-201ENST00000373602 GLIPR1P48060 266 aa17.5■□□□□ 0.39
CCDC28B-201ENST00000373602 MTNR1BP49286 362 aa17.5■□□□□ 0.39
CCDC28B-201ENST00000373602 ETV1P50549 477 aa17.5■□□□□ 0.39
CCDC28B-201ENST00000373602 AESQ08117 197 aa17.5■□□□□ 0.39
CCDC28B-201ENST00000373602 HERPUD1Q15011 391 aa17.5■□□□□ 0.39
CCDC28B-201ENST00000373602 CDK5R1Q15078 307 aa17.5■□□□□ 0.39
CCDC28B-201ENST00000373602 XAF1Q6GPH4 301 aa17.5■□□□□ 0.39
CCDC28B-201ENST00000373602 ELP2Q6IA86 826 aa17.5■□□□□ 0.39
CCDC28B-201ENST00000373602 RPL22L1Q6P5R6 122 aaKnown RBP17.5■□□□□ 0.39
CCDC28B-201ENST00000373602 PXT1Q8NFP0 134 aa17.5■□□□□ 0.39
CCDC28B-201ENST00000373602 GAL3ST2Q9H3Q3 398 aa17.5■□□□□ 0.39
CCDC28B-201ENST00000373602 TAS2R3Q9NYW6 316 aa17.5■□□□□ 0.39
CCDC28B-201ENST00000373602 SLC33A1O00400 549 aaPredicted RBP17.49■□□□□ 0.39
CCDC28B-201ENST00000373602 DEGS1O15121 323 aa17.49■□□□□ 0.39
CCDC28B-201ENST00000373602 CLIC3O95833 236 aa17.49■□□□□ 0.39
CCDC28B-201ENST00000373602 TSPAN15O95858 294 aa17.49■□□□□ 0.39
CCDC28B-201ENST00000373602 SOX2P48431 317 aa17.49■□□□□ 0.39
CCDC28B-201ENST00000373602 DEFA6Q01524 100 aa17.49■□□□□ 0.39
CCDC28B-201ENST00000373602 SCN1BQ07699 218 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms