RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 KCNS2Q9ULS6 477 aa7.63□□□□□ -1.19
VPS35-206ENST00000565228 ZNF281Q9Y2X9 895 aa7.63□□□□□ -1.19
VPS35-206ENST00000565228 SF3B6Q9Y3B4 125 aaKnown RBP7.63□□□□□ -1.19
VPS35-206ENST00000565228 NOP16Q9Y3C1 178 aaKnown RBP7.63□□□□□ -1.19
VPS35-206ENST00000565228 INSIG2Q9Y5U4 225 aa7.63□□□□□ -1.19
VPS35-206ENST00000565228 KIAA2026Q5HYC2 2103 aa7.63□□□□□ -1.19
VPS35-206ENST00000565228 TMEM82A0PJX8 343 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 IRGMA1A4Y4 181 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 RFPL4AA6NLU0 287 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 LRRC30A6NM36 301 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 RFPL4AL1F8VTS6 287 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 DVL1O14640 695 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 SC5DO75845 299 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 SFTPBP07988 381 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 IRF2P14316 349 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 MMP9P14780 707 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 MUC1P15941 1255 aaPredicted RBP7.62□□□□□ -1.19
VPS35-206ENST00000565228 CELP19835 753 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 PCMT1P22061 227 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 GLRA1P23415 457 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 DUSP1P28562 367 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 FUT6P51993 359 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 ERVFRD-1P60508 538 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 RPS25P62851 125 aaKnown RBP7.62□□□□□ -1.19
VPS35-206ENST00000565228 ACSM1Q08AH1 577 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 IKZF1Q13422 519 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 PDCD1Q15116 288 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 SSX1Q16384 188 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 FAHD2BQ6P2I3 314 aaPredicted RBP7.62□□□□□ -1.19
VPS35-206ENST00000565228 TMPRSS11AQ6ZMR5 421 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 SLC25A26Q70HW3 274 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 GLCCI1Q86VQ1 547 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 C1orf87Q8N0U7 546 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 FTMTQ8N4E7 242 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 LY6G5BQ8NDX9 201 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 PP6455Q8WZ26 134 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 ITFG2Q969R8 447 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 C10orf35Q96D05 121 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 RAB39BQ96DA2 213 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 FAHD2AQ96GK7 314 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 HIST1H2AAQ96QV6 131 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 OR14A2Q96R54 314 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 GFI1Q99684 422 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 PKIBQ9C010 78 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 PLEKHA1Q9HB21 404 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 ABCB9Q9NP78 766 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 MIOXQ9UGB7 285 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 PCDHB10Q9UN67 800 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 DHDHQ9UQ10 334 aa7.62□□□□□ -1.19
VPS35-206ENST00000565228 IGHV3OR16-10A0A075B7F0 116 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 TRAV38-1A0A0B4J264 116 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 TRAV20A0A0B4J274 112 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 IGHV2-70DA0A0C4DH43 119 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 SHISA3A0PJX4 238 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 MEX3AA1L020 520 aaKnown RBP7.61□□□□□ -1.19
VPS35-206ENST00000565228 OR2AT4A6NND4 320 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 GABRPO00591 440 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 SIGLEC5O15389 551 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 TMPRSS2O15393 492 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 RGS10O43665 173 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 ZNF737O75373 536 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 ACAA1P09110 424 aaPredicted RBP7.61□□□□□ -1.19
VPS35-206ENST00000565228 IGHV4-38-2P0DP08 117 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 OR3A4PP47883 348 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 POU3F4P49335 361 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 MTCP1P56278 107 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 GNB2P62879 340 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 MZT1Q08AG7 82 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 MRPL28Q13084 256 aaKnown RBP7.61□□□□□ -1.19
VPS35-206ENST00000565228 PDZK1IP1Q13113 114 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 SPHARQ15513 63 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 SNCBQ16143 134 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 TMEM91Q6ZNR0 172 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 TCF23Q7RTU1 214 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 PRSS48Q7RTY5 328 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 ZNF573Q86YE8 665 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 BCL6BQ8N143 479 aaPredicted RBP7.61□□□□□ -1.19
VPS35-206ENST00000565228 CCDC54Q8NEL0 328 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 DNAAF1Q8NEP3 725 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 OR8B3Q8NGG8 313 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 TSEN15Q8WW01 171 aaKnown RBP7.61□□□□□ -1.19
VPS35-206ENST00000565228 RAB40AQ8WXH6 277 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 TMEM106AQ96A25 262 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 BORCS8Q96FH0 119 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 C1orf147Q96MC9 270 aaPredicted RBP7.61□□□□□ -1.19
VPS35-206ENST00000565228 DERL3Q96Q80 235 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 OR8B2Q96RD0 313 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 TBX15Q96SF7 602 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 SHARPINQ9H0F6 387 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 VCX3BQ9H321 246 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 TRIM36Q9NQ86 728 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 LRCH1Q9Y2L9 728 aa7.61□□□□□ -1.19
VPS35-206ENST00000565228 PPIAL4CA0A0B4J2A2 164 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 KIR2DS1A0A191URI9 304 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 A0A1W2PP11 408 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 MYL12BO14950 172 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 SULT1B1O43704 296 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 RRP9O43818 475 aaKnown RBP7.6□□□□□ -1.19
VPS35-206ENST00000565228 PSPNO60542 156 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 FOXH1O75593 365 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms