RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 TMED1Q13445 227 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 DMC1Q14565 340 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 MAD2L1BPQ15013 274 aaPredicted RBP1.83□□□□□ -2.12
CD44-233ENST00000531141 RCN1Q15293 331 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 SLC25A35Q3KQZ1 300 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 DEGS2Q6QHC5 323 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 BZW1Q7L1Q6 419 aaKnown RBP1.83□□□□□ -2.12
CD44-233ENST00000531141 EIF3MQ7L2H7 374 aaKnown RBP1.83□□□□□ -2.12
CD44-233ENST00000531141 LUZP2Q86TE4 346 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 MDP1Q86V88 176 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 C1orf64Q8NEQ6 169 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 OR2Z1Q8NG97 314 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 OR1L1Q8NH94 360 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 RXFP4Q8TDU9 374 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 CPNE4Q96A23 557 aaPredicted RBP1.83□□□□□ -2.12
CD44-233ENST00000531141 CFAP53Q96M91 514 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 ZFP3Q96NJ6 502 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 KCNS3Q9BQ31 491 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 RHOXF2Q9BQY4 288 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 CALN1Q9BXU9 219 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 CSNK1G1Q9HCP0 422 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 C20orf96Q9NUD7 363 aaPredicted RBP1.83□□□□□ -2.12
CD44-233ENST00000531141 RAB20Q9NX57 234 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 HIVEP2P31629 2446 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 CREBBPQ92793 2442 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 KMT2EQ8IZD2 1858 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 MYO3BQ8WXR4 1341 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 ASXL3Q9C0F0 2248 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 ABCC12Q96J65 1359 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 FREM2Q5SZK8 3169 aa1.82□□□□□ -2.12
CD44-233ENST00000531141 SCN9AQ15858 1988 aa1.82□□□□□ -2.12
CD44-233ENST00000531141 COL12A1Q99715 3063 aa1.82□□□□□ -2.12
CD44-233ENST00000531141 KCNE1BA0A087WTH5 132 aa1.82□□□□□ -2.12
CD44-233ENST00000531141 IGKV2-24A0A0C4DH68 120 aa1.82□□□□□ -2.12
CD44-233ENST00000531141 ANKRD65E5RJM6 399 aa1.82□□□□□ -2.12
CD44-233ENST00000531141 NME4O00746 187 aa1.82□□□□□ -2.12
CD44-233ENST00000531141 CACNG3O60359 315 aa1.82□□□□□ -2.12
CD44-233ENST00000531141 SLC16A7O60669 478 aa1.82□□□□□ -2.12
CD44-233ENST00000531141 CBR3O75828 277 aa1.82□□□□□ -2.12
CD44-233ENST00000531141 COL8A2P25067 703 aa1.82□□□□□ -2.12
CD44-233ENST00000531141 CD34P28906 385 aa1.82□□□□□ -2.12
CD44-233ENST00000531141 PCK1P35558 622 aa1.82□□□□□ -2.12
CD44-233ENST00000531141 ANGPT1Q15389 498 aa1.82□□□□□ -2.12
CD44-233ENST00000531141 GCSAMLQ5JQS6 135 aa1.82□□□□□ -2.12
CD44-233ENST00000531141 N4BP2L1Q5TBK1 243 aaPredicted RBP1.82□□□□□ -2.12
CD44-233ENST00000531141 MFSD14CQ5VZR4 134 aa1.82□□□□□ -2.12
CD44-233ENST00000531141 PRSS54Q6PEW0 395 aa1.82□□□□□ -2.12
CD44-233ENST00000531141 TMEM220Q6QAJ8 160 aa1.82□□□□□ -2.12
CD44-233ENST00000531141 OR52K2Q8NGK3 314 aa1.82□□□□□ -2.12
CD44-233ENST00000531141 GPR21Q99679 349 aa1.82□□□□□ -2.12
CD44-233ENST00000531141 NUDT9Q9BW91 350 aa1.82□□□□□ -2.12
CD44-233ENST00000531141 LHX5Q9H2C1 402 aa1.82□□□□□ -2.12
CD44-233ENST00000531141 NCOR1P1Q9H4R4 102 aa1.82□□□□□ -2.12
CD44-233ENST00000531141 ZNF442Q9H7R0 627 aa1.82□□□□□ -2.12
CD44-233ENST00000531141 CCNB1IP1Q9NPC3 277 aa1.82□□□□□ -2.12
CD44-233ENST00000531141 RCL1Q9Y2P8 373 aaKnown RBP1.82□□□□□ -2.12
CD44-233ENST00000531141 LRRC42Q9Y546 428 aa1.82□□□□□ -2.12
CD44-233ENST00000531141 UBN2Q6ZU65 1347 aa1.82□□□□□ -2.12
CD44-233ENST00000531141 OTOGLQ3ZCN5 2332 aa1.82□□□□□ -2.12
CD44-233ENST00000531141 C2CD3Q4AC94 2353 aa1.81□□□□□ -2.12
CD44-233ENST00000531141 RELNP78509 3460 aa1.81□□□□□ -2.12
CD44-233ENST00000531141 IGKV1-27A0A075B6S5 117 aa1.81□□□□□ -2.12
CD44-233ENST00000531141 C16orf90A8MZG2 172 aa1.81□□□□□ -2.12
CD44-233ENST00000531141 CASQ2O14958 399 aaPredicted RBP1.81□□□□□ -2.12
CD44-233ENST00000531141 RAB5AP20339 215 aa1.81□□□□□ -2.12
CD44-233ENST00000531141 NTF3P20783 257 aa1.81□□□□□ -2.12
CD44-233ENST00000531141 CASQ1P31415 396 aa1.81□□□□□ -2.12
CD44-233ENST00000531141 TGFBR1P36897 503 aa1.81□□□□□ -2.12
CD44-233ENST00000531141 POLR2IP36954 125 aaKnown RBP1.81□□□□□ -2.12
CD44-233ENST00000531141 RFC3P40938 356 aa1.81□□□□□ -2.12
CD44-233ENST00000531141 RPS11P62280 158 aaKnown RBP eCLIP1.81□□□□□ -2.12
CD44-233ENST00000531141 RBX1P62877 108 aa1.81□□□□□ -2.12
CD44-233ENST00000531141 BEX3Q00994 111 aa1.81□□□□□ -2.12
CD44-233ENST00000531141 CUL2Q13617 745 aa1.81□□□□□ -2.12
CD44-233ENST00000531141 TRMT5Q32P41 509 aaKnown RBP1.81□□□□□ -2.12
CD44-233ENST00000531141 STUMQ69YW2 141 aa1.81□□□□□ -2.12
CD44-233ENST00000531141 MED27Q6P2C8 311 aa1.81□□□□□ -2.12
CD44-233ENST00000531141 CD300LGQ6UXG3 332 aa1.81□□□□□ -2.12
CD44-233ENST00000531141 BRD3OSQ6XYD6 125 aa1.81□□□□□ -2.12
CD44-233ENST00000531141 APRG1Q8IVJ8 170 aa1.81□□□□□ -2.12
CD44-233ENST00000531141 VKORC1L1Q8N0U8 176 aa1.81□□□□□ -2.12
CD44-233ENST00000531141 PQLC3Q8N755 202 aa1.81□□□□□ -2.12
CD44-233ENST00000531141 OR52E5Q8NH55 327 aa1.81□□□□□ -2.12
CD44-233ENST00000531141 GHSRQ92847 366 aa1.81□□□□□ -2.12
CD44-233ENST00000531141 CDS1Q92903 461 aa1.81□□□□□ -2.12
CD44-233ENST00000531141 RERGQ96A58 199 aaPredicted RBP1.81□□□□□ -2.12
CD44-233ENST00000531141 EMC6Q9BV81 110 aa1.81□□□□□ -2.12
CD44-233ENST00000531141 VPS37BQ9H9H4 285 aa1.81□□□□□ -2.12
CD44-233ENST00000531141 MRPS30Q9NP92 439 aaKnown RBP1.81□□□□□ -2.12
CD44-233ENST00000531141 PTTG3PQ9NZH4 202 aa1.81□□□□□ -2.12
CD44-233ENST00000531141 RABL2AQ9UBK7 228 aaPredicted RBP1.81□□□□□ -2.12
CD44-233ENST00000531141 FBN3Q75N90 2809 aa1.81□□□□□ -2.12
CD44-233ENST00000531141 FBN2P35556 2912 aa1.81□□□□□ -2.12
CD44-233ENST00000531141 GBF1Q92538 1859 aa1.81□□□□□ -2.12
CD44-233ENST00000531141 MAST2Q6P0Q8 1798 aa1.8□□□□□ -2.12
CD44-233ENST00000531141 RALGAPA2Q2PPJ7 1873 aa1.8□□□□□ -2.12
CD44-233ENST00000531141 AK9Q5TCS8 1911 aa1.8□□□□□ -2.12
CD44-233ENST00000531141 KIR2DS1A0A191URI9 304 aa1.8□□□□□ -2.12
CD44-233ENST00000531141 CEACAM18A8MTB9 384 aa1.8□□□□□ -2.12
CD44-233ENST00000531141 FAM25EA8MYX2 175 aa1.8□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms