RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 FABP1P07148 127 aa16.78■□□□□ 0.28
VPS28-213ENST00000530983 CYC1P08574 325 aa16.78■□□□□ 0.28
VPS28-213ENST00000530983 DSCR4P56555 118 aaPredicted RBP16.78■□□□□ 0.28
VPS28-213ENST00000530983 MAML2Q8IZL2 1156 aaPredicted RBP16.78■□□□□ 0.28
VPS28-213ENST00000530983 FAM71E2Q8N5Q1 922 aa16.78■□□□□ 0.28
VPS28-213ENST00000530983 FAAP24Q9BTP7 215 aa16.78■□□□□ 0.28
VPS28-213ENST00000530983 WDR54Q9H977 334 aa16.78■□□□□ 0.28
VPS28-213ENST00000530983 FSCN3Q9NQT6 498 aa16.78■□□□□ 0.28
VPS28-213ENST00000530983 FBXL17Q9UF56 701 aa16.78■□□□□ 0.28
VPS28-213ENST00000530983 PADI1Q9ULC6 663 aa16.78■□□□□ 0.28
VPS28-213ENST00000530983 OR5H8P0DN80 308 aa16.78■□□□□ 0.28
VPS28-213ENST00000530983 CRYGSP22914 178 aa16.78■□□□□ 0.28
VPS28-213ENST00000530983 SUCLG1P53597 346 aaKnown RBP16.78■□□□□ 0.28
VPS28-213ENST00000530983 GGNBP1Q5YKI7 109 aa16.78■□□□□ 0.28
VPS28-213ENST00000530983 OPN5Q6U736 354 aa16.78■□□□□ 0.28
VPS28-213ENST00000530983 BTNL8Q6UX41 500 aa16.78■□□□□ 0.28
VPS28-213ENST00000530983 CCDC54Q8NEL0 328 aa16.78■□□□□ 0.28
VPS28-213ENST00000530983 SAP25Q8TEE9 199 aa16.78■□□□□ 0.28
VPS28-213ENST00000530983 IGKV1-27A0A075B6S5 117 aa16.77■□□□□ 0.28
VPS28-213ENST00000530983 SPRY1O43609 319 aaPredicted RBP16.77■□□□□ 0.28
VPS28-213ENST00000530983 FBXO24O75426 580 aa16.77■□□□□ 0.28
VPS28-213ENST00000530983 UMODP07911 640 aa16.77■□□□□ 0.28
VPS28-213ENST00000530983 FCGR3AP08637 254 aa16.77■□□□□ 0.28
VPS28-213ENST00000530983 FCGR2CP31995 323 aa16.77■□□□□ 0.28
VPS28-213ENST00000530983 CXCL12P48061 93 aa16.77■□□□□ 0.28
VPS28-213ENST00000530983 RRADP55042 308 aa16.77■□□□□ 0.28
VPS28-213ENST00000530983 HGFACQ04756 655 aa16.77■□□□□ 0.28
VPS28-213ENST00000530983 TAF9Q16594 264 aa16.77■□□□□ 0.28
VPS28-213ENST00000530983 FAM27BQ5VT28 67 aa16.77■□□□□ 0.28
VPS28-213ENST00000530983 PLXDC2Q6UX71 529 aa16.77■□□□□ 0.28
VPS28-213ENST00000530983 IMMP1LQ96LU5 166 aa16.77■□□□□ 0.28
VPS28-213ENST00000530983 JSRP1Q96MG2 331 aaPredicted RBP16.77■□□□□ 0.28
VPS28-213ENST00000530983 PRRX2Q99811 253 aa16.77■□□□□ 0.28
VPS28-213ENST00000530983 NAA11Q9BSU3 229 aaPredicted RBP16.77■□□□□ 0.28
VPS28-213ENST00000530983 METTL9Q9H1A3 318 aa16.77■□□□□ 0.28
VPS28-213ENST00000530983 GSN-AS1Q9NRJ2 163 aa16.77■□□□□ 0.28
VPS28-213ENST00000530983 AK3Q9UIJ7 227 aa16.77■□□□□ 0.28
VPS28-213ENST00000530983 AMDHD2Q9Y303 409 aa16.77■□□□□ 0.28
VPS28-213ENST00000530983 VPS13AQ96RL7 3174 aa16.77■□□□□ 0.27
VPS28-213ENST00000530983 A0A0J9YW62 118 aa16.76■□□□□ 0.27
VPS28-213ENST00000530983 RNASEK-C17orf49H0YIS7 233 aa16.76■□□□□ 0.27
VPS28-213ENST00000530983 TNFSF11O14788 317 aa16.76■□□□□ 0.27
VPS28-213ENST00000530983 SFTA3P0C7M3 94 aa16.76■□□□□ 0.27
VPS28-213ENST00000530983 TMEM33P57088 247 aa16.76■□□□□ 0.27
VPS28-213ENST00000530983 MRPS34P82930 218 aaKnown RBP16.76■□□□□ 0.27
VPS28-213ENST00000530983 CHAF1BQ13112 559 aa16.76■□□□□ 0.27
VPS28-213ENST00000530983 PEA15Q15121 130 aa16.76■□□□□ 0.27
VPS28-213ENST00000530983 C20orf196Q8IYI0 205 aa16.76■□□□□ 0.27
VPS28-213ENST00000530983 CLDN23Q96B33 292 aa16.76■□□□□ 0.27
VPS28-213ENST00000530983 SPSB1Q96BD6 273 aa16.76■□□□□ 0.27
VPS28-213ENST00000530983 SRXN1Q9BYN0 137 aa16.76■□□□□ 0.27
VPS28-213ENST00000530983 TRAV20A0A0B4J274 112 aa16.76■□□□□ 0.27
VPS28-213ENST00000530983 GAPDHP04406 335 aaKnown RBP16.76■□□□□ 0.27
VPS28-213ENST00000530983 CD5P06127 495 aa16.76■□□□□ 0.27
VPS28-213ENST00000530983 COX6A1P12074 109 aa16.76■□□□□ 0.27
VPS28-213ENST00000530983 CBR1P16152 277 aa16.76■□□□□ 0.27
VPS28-213ENST00000530983 ID4P47928 161 aa16.76■□□□□ 0.27
VPS28-213ENST00000530983 PRSS12P56730 875 aa16.76■□□□□ 0.27
VPS28-213ENST00000530983 TSC22D1Q15714 1073 aa16.76■□□□□ 0.27
VPS28-213ENST00000530983 NTNG2Q96CW9 530 aa16.76■□□□□ 0.27
VPS28-213ENST00000530983 RNF122Q9H9V4 155 aa16.76■□□□□ 0.27
VPS28-213ENST00000530983 PARP11Q9NR21 331 aa16.76■□□□□ 0.27
VPS28-213ENST00000530983 DKKL1Q9UK85 242 aa16.76■□□□□ 0.27
VPS28-213ENST00000530983 LSM5Q9Y4Y9 91 aaKnown RBP16.76■□□□□ 0.27
VPS28-213ENST00000530983 FAM230AA0A1W2PPH8 454 aa16.75■□□□□ 0.27
VPS28-213ENST00000530983 C9JQL5 133 aa16.75■□□□□ 0.27
VPS28-213ENST00000530983 ZNF205O95201 554 aa16.75■□□□□ 0.27
VPS28-213ENST00000530983 IFNA21P01568 189 aa16.75■□□□□ 0.27
VPS28-213ENST00000530983 SMIM6P0DI80 62 aa16.75■□□□□ 0.27
VPS28-213ENST00000530983 FGF5P12034 268 aa16.75■□□□□ 0.27
VPS28-213ENST00000530983 FOLR2P14207 255 aa16.75■□□□□ 0.27
VPS28-213ENST00000530983 OPRM1P35372 400 aa16.75■□□□□ 0.27
VPS28-213ENST00000530983 RSU1Q15404 277 aa16.75■□□□□ 0.27
VPS28-213ENST00000530983 INTS12Q96CB8 462 aaKnown RBP16.75■□□□□ 0.27
VPS28-213ENST00000530983 SH2D2AQ9NP31 389 aa16.75■□□□□ 0.27
VPS28-213ENST00000530983 NXT1Q9UKK6 140 aaKnown RBP16.75■□□□□ 0.27
VPS28-213ENST00000530983 HSF4Q9ULV5 492 aa16.75■□□□□ 0.27
VPS28-213ENST00000530983 FRYLO94915 3013 aa16.75■□□□□ 0.27
VPS28-213ENST00000530983 FAM157AC9JC47 383 aa16.75■□□□□ 0.27
VPS28-213ENST00000530983 AGPAT2O15120 278 aa16.75■□□□□ 0.27
VPS28-213ENST00000530983 SYNGR3O43761 229 aa16.75■□□□□ 0.27
VPS28-213ENST00000530983 JTBO76095 146 aa16.75■□□□□ 0.27
VPS28-213ENST00000530983 ZNF806P0C7X5 589 aa16.75■□□□□ 0.27
VPS28-213ENST00000530983 PAX6P26367 422 aa16.75■□□□□ 0.27
VPS28-213ENST00000530983 PIGPP57054 158 aa16.75■□□□□ 0.27
VPS28-213ENST00000530983 RAB5BP61020 215 aa16.75■□□□□ 0.27
VPS28-213ENST00000530983 SMCO1Q147U7 214 aa16.75■□□□□ 0.27
VPS28-213ENST00000530983 REEP6Q96HR9 211 aa16.75■□□□□ 0.27
VPS28-213ENST00000530983 SMIM3Q9BZL3 60 aa16.75■□□□□ 0.27
VPS28-213ENST00000530983 RAB35Q15286 201 aa16.74■□□□□ 0.27
VPS28-213ENST00000530983 DHRS11Q6UWP2 260 aa16.74■□□□□ 0.27
VPS28-213ENST00000530983 TOMM40LQ969M1 308 aa16.74■□□□□ 0.27
VPS28-213ENST00000530983 SULT4A1Q9BR01 284 aa16.74■□□□□ 0.27
VPS28-213ENST00000530983 ZNF700Q9H0M5 742 aa16.74■□□□□ 0.27
VPS28-213ENST00000530983 NECAP2Q9NVZ3 263 aa16.74■□□□□ 0.27
VPS28-213ENST00000530983 C5orf52A6NGY3 159 aa16.74■□□□□ 0.27
VPS28-213ENST00000530983 CHATP28329 748 aa16.74■□□□□ 0.27
VPS28-213ENST00000530983 NTF4P34130 210 aa16.74■□□□□ 0.27
VPS28-213ENST00000530983 F2RL1P55085 397 aa16.74■□□□□ 0.27
VPS28-213ENST00000530983 RAC1P63000 192 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms