RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 TMEM155Q4W5P6 130 aa15.13■□□□□ 0.01
SQSTM1-209ENST00000504627 HSD17B12Q53GQ0 312 aa15.13■□□□□ 0.01
SQSTM1-209ENST00000504627 C1QL2Q7Z5L3 287 aa15.13■□□□□ 0.01
SQSTM1-209ENST00000504627 NAA40Q86UY6 237 aa15.13■□□□□ 0.01
SQSTM1-209ENST00000504627 PLPP7Q8NBV4 271 aa15.13■□□□□ 0.01
SQSTM1-209ENST00000504627 OR13C3Q8NGS6 347 aa15.13■□□□□ 0.01
SQSTM1-209ENST00000504627 TMEM106AQ96A25 262 aa15.13■□□□□ 0.01
SQSTM1-209ENST00000504627 RNF167Q9H6Y7 350 aa15.13■□□□□ 0.01
SQSTM1-209ENST00000504627 PATZ1Q9HBE1 687 aaKnown RBP15.13■□□□□ 0.01
SQSTM1-209ENST00000504627 N6AMT1Q9Y5N5 214 aa15.13■□□□□ 0.01
SQSTM1-209ENST00000504627 TANC2Q9HCD6 1990 aa15.13■□□□□ 0.01
SQSTM1-209ENST00000504627 TRAV1-2A0A0B4J238 106 aa15.12■□□□□ 0.01
SQSTM1-209ENST00000504627 IFNL4K9M1U5 179 aa15.12■□□□□ 0.01
SQSTM1-209ENST00000504627 MTRF1O75570 445 aaKnown RBP15.12■□□□□ 0.01
SQSTM1-209ENST00000504627 DHRS3O75911 302 aa15.12■□□□□ 0.01
SQSTM1-209ENST00000504627 CALRP27797 417 aaKnown RBP15.12■□□□□ 0.01
SQSTM1-209ENST00000504627 TGFBR1P36897 503 aa15.12■□□□□ 0.01
SQSTM1-209ENST00000504627 SOX2P48431 317 aa15.12■□□□□ 0.01
SQSTM1-209ENST00000504627 ZMYND11Q15326 602 aa15.12■□□□□ 0.01
SQSTM1-209ENST00000504627 GLYATL3Q5SZD4 288 aa15.12■□□□□ 0.01
SQSTM1-209ENST00000504627 FAM27D1Q5T7N8 215 aa15.12■□□□□ 0.01
SQSTM1-209ENST00000504627 LRRC28Q86X40 367 aaPredicted RBP15.12■□□□□ 0.01
SQSTM1-209ENST00000504627 MUC20Q8N307 709 aaPredicted RBP15.12■□□□□ 0.01
SQSTM1-209ENST00000504627 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP15.12■□□□□ 0.01
SQSTM1-209ENST00000504627 SPSB4Q96A44 273 aa15.12■□□□□ 0.01
SQSTM1-209ENST00000504627 C10orf35Q96D05 121 aa15.12■□□□□ 0.01
SQSTM1-209ENST00000504627 REEP6Q96HR9 211 aa15.12■□□□□ 0.01
SQSTM1-209ENST00000504627 MEGF10Q96KG7 1140 aa15.12■□□□□ 0.01
SQSTM1-209ENST00000504627 JMJD8Q96S16 334 aa15.12■□□□□ 0.01
SQSTM1-209ENST00000504627 GCM1Q9NP62 436 aa15.12■□□□□ 0.01
SQSTM1-209ENST00000504627 NOX4Q9NPH5 578 aa15.12■□□□□ 0.01
SQSTM1-209ENST00000504627 TMEM100Q9NV29 134 aa15.12■□□□□ 0.01
SQSTM1-209ENST00000504627 CCDC59Q9P031 241 aaKnown RBP15.12■□□□□ 0.01
SQSTM1-209ENST00000504627 ANK2Q01484 3957 aa15.11■□□□□ 0.01
SQSTM1-209ENST00000504627 C5orf63A6NC05 138 aa15.11■□□□□ 0.01
SQSTM1-209ENST00000504627 IQCF6A8MYZ5 107 aa15.11■□□□□ 0.01
SQSTM1-209ENST00000504627 H0YL77 283 aa15.11■□□□□ 0.01
SQSTM1-209ENST00000504627 TMEM178BH3BS89 294 aa15.11■□□□□ 0.01
SQSTM1-209ENST00000504627 ZFP36P26651 326 aaKnown RBP15.11■□□□□ 0.01
SQSTM1-209ENST00000504627 MDH2P40926 338 aaKnown RBP15.11■□□□□ 0.01
SQSTM1-209ENST00000504627 GFOD2Q3B7J2 385 aa15.11■□□□□ 0.01
SQSTM1-209ENST00000504627 BPIFB2Q8N4F0 458 aa15.11■□□□□ 0.01
SQSTM1-209ENST00000504627 SEMA6DQ8NFY4 1073 aa15.11■□□□□ 0.01
SQSTM1-209ENST00000504627 DYNC2LI1Q8TCX1 351 aa15.11■□□□□ 0.01
SQSTM1-209ENST00000504627 ZFAND2BQ8WV99 257 aa15.11■□□□□ 0.01
SQSTM1-209ENST00000504627 FAM71F1Q96KD3 344 aaPredicted RBP15.11■□□□□ 0.01
SQSTM1-209ENST00000504627 SLC30A2Q9BRI3 323 aa15.11■□□□□ 0.01
SQSTM1-209ENST00000504627 DCUN1D5Q9BTE7 237 aa15.11■□□□□ 0.01
SQSTM1-209ENST00000504627 SUCNR1Q9BXA5 334 aa15.11■□□□□ 0.01
SQSTM1-209ENST00000504627 PLEKHA1Q9HB21 404 aa15.11■□□□□ 0.01
SQSTM1-209ENST00000504627 CKLFQ9UBR5 152 aa15.11■□□□□ 0.01
SQSTM1-209ENST00000504627 V9GYS6 101 aa15.11■□□□□ 0.01
SQSTM1-209ENST00000504627 PPIAL4EA0A075B759 164 aa15.1■□□□□ 0.01
SQSTM1-209ENST00000504627 PPIAL4CA0A0B4J2A2 164 aa15.1■□□□□ 0.01
SQSTM1-209ENST00000504627 IGHV3-64DA0A0J9YX35 117 aa15.1■□□□□ 0.01
SQSTM1-209ENST00000504627 hCG_38984A0A1B0GV85 526 aa15.1■□□□□ 0.01
SQSTM1-209ENST00000504627 LRRC30A6NM36 301 aa15.1■□□□□ 0.01
SQSTM1-209ENST00000504627 PPIAL4DF5H284 164 aa15.1■□□□□ 0.01
SQSTM1-209ENST00000504627 F5H5P2 479 aa15.1■□□□□ 0.01
SQSTM1-209ENST00000504627 PIN1P1O15428 100 aa15.1■□□□□ 0.01
SQSTM1-209ENST00000504627 PPIAL4FP0DN26 164 aa15.1■□□□□ 0.01
SQSTM1-209ENST00000504627 HILS1P60008 231 aa15.1■□□□□ 0.01
SQSTM1-209ENST00000504627 ACTG1P63261 375 aa15.1■□□□□ 0.01
SQSTM1-209ENST00000504627 GK2Q14410 553 aaPredicted RBP15.1■□□□□ 0.01
SQSTM1-209ENST00000504627 ESCO2Q56NI9 601 aa15.1■□□□□ 0.01
SQSTM1-209ENST00000504627 C12orf54Q6X4T0 127 aa15.1■□□□□ 0.01
SQSTM1-209ENST00000504627 PGAP1Q75T13 922 aa15.1■□□□□ 0.01
SQSTM1-209ENST00000504627 TPRA1Q86W33 373 aa15.1■□□□□ 0.01
SQSTM1-209ENST00000504627 PARP16Q8N5Y8 322 aa15.1■□□□□ 0.01
SQSTM1-209ENST00000504627 OR14K1Q8NGZ2 314 aa15.1■□□□□ 0.01
SQSTM1-209ENST00000504627 SGK3Q96BR1 496 aa15.1■□□□□ 0.01
SQSTM1-209ENST00000504627 LYZL4Q96KX0 146 aa15.1■□□□□ 0.01
SQSTM1-209ENST00000504627 SLITRK2Q9H156 845 aa15.1■□□□□ 0.01
SQSTM1-209ENST00000504627 PPIL3Q9H2H8 161 aaKnown RBP15.1■□□□□ 0.01
SQSTM1-209ENST00000504627 SNTG1Q9NSN8 517 aa15.1■□□□□ 0.01
SQSTM1-209ENST00000504627 ARHGAP32A7KAX9 2087 aa15.1■□□□□ 0.01
SQSTM1-209ENST00000504627 H3BSH0 61 aa15.09■□□□□ 0.01
SQSTM1-209ENST00000504627 TRIM77I1YAP6 450 aa15.09■□□□□ 0.01
SQSTM1-209ENST00000504627 MLNRO43193 412 aa15.09■□□□□ 0.01
SQSTM1-209ENST00000504627 CDRT1O95170 752 aa15.09■□□□□ 0.01
SQSTM1-209ENST00000504627 ZNF205O95201 554 aa15.09■□□□□ 0.01
SQSTM1-209ENST00000504627 CYB5R3P00387 301 aaPredicted RBP15.09■□□□□ 0.01
SQSTM1-209ENST00000504627 ZNF20P17024 532 aa15.09■□□□□ 0.01
SQSTM1-209ENST00000504627 ZNF182P17025 639 aaPredicted RBP15.09■□□□□ 0.01
SQSTM1-209ENST00000504627 FPR2P25090 351 aa15.09■□□□□ 0.01
SQSTM1-209ENST00000504627 SDC2P34741 201 aa15.09■□□□□ 0.01
SQSTM1-209ENST00000504627 PRSS12P56730 875 aa15.09■□□□□ 0.01
SQSTM1-209ENST00000504627 OR8B8Q15620 311 aa15.09■□□□□ 0.01
SQSTM1-209ENST00000504627 MRPL21Q7Z2W9 205 aaKnown RBP15.09■□□□□ 0.01
SQSTM1-209ENST00000504627 MOGAT3Q86VF5 341 aa15.09■□□□□ 0.01
SQSTM1-209ENST00000504627 C1orf87Q8N0U7 546 aa15.09■□□□□ 0.01
SQSTM1-209ENST00000504627 OR2AE1Q8NHA4 323 aa15.09■□□□□ 0.01
SQSTM1-209ENST00000504627 SLC6A7Q99884 636 aa15.09■□□□□ 0.01
SQSTM1-209ENST00000504627 MMP26Q9NRE1 261 aa15.09■□□□□ 0.01
SQSTM1-209ENST00000504627 OR5V1Q9UGF6 321 aa15.09■□□□□ 0.01
SQSTM1-209ENST00000504627 OPN4Q9UHM6 478 aa15.09■□□□□ 0.01
SQSTM1-209ENST00000504627 FOXJ3Q9UPW0 622 aa15.09■□□□□ 0.01
SQSTM1-209ENST00000504627 SHISA3A0PJX4 238 aa15.08■□□□□ 0
SQSTM1-209ENST00000504627 IRF2P14316 349 aa15.08■□□□□ 0
SQSTM1-209ENST00000504627 SOX6P35712 828 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms