RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-210	ENST00000485247	PRSS27	Q9BQR3	290 aa		4.13	□□□□□ -1.75
PTPN4-210	ENST00000485247	ST6GALNAC5	Q9BVH7	336 aa		4.13	□□□□□ -1.75
PTPN4-210	ENST00000485247	ISYNA1	Q9NPH2	558 aa		4.13	□□□□□ -1.75
PTPN4-210	ENST00000485247	AIG1	Q9NVV5	245 aa		4.13	□□□□□ -1.75
PTPN4-210	ENST00000485247	NLK	Q9UBE8	527 aa		4.13	□□□□□ -1.75
PTPN4-210	ENST00000485247	LRP12	Q9Y561	859 aa		4.13	□□□□□ -1.75
PTPN4-210	ENST00000485247	IGKV1D-17	A0A075B6S4	117 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	MEX3A	A1L020	520 aa	Known RBP	4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	SMIM23	A6NLE4	172 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	ANKRD30BL	A7E2S9	258 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247		H0YIZ8	118 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	IMPA2	O14732	288 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	RIPK2	O43353	540 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	SAP30	O75446	220 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	IL6	P05231	212 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	IGHV1-8	P0DP01	117 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	PIP	P12273	146 aa	Predicted RBP	4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	ANOS1	P23352	680 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	MDH1	P40925	334 aa	Known RBP	4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	CENPA	P49450	140 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	SPIB	Q01892	262 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	TRAP1	Q12931	704 aa	Known RBP	4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	SCARB2	Q14108	478 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	SNAPC1	Q16533	368 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	KRTAP27-1	Q3LI81	207 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	GLYATL3	Q5SZD4	288 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	RNLS	Q5VYX0	342 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	TEX38	Q6PEX7	206 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	ACP7	Q6ZNF0	438 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	TMPRSS11F	Q6ZWK6	438 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	TSEN54	Q7Z6J9	526 aa	Known RBP	4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	NKAIN4	Q8IVV8	208 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	SGPP2	Q8IWX5	399 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	COMMD1	Q8N668	190 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	DRAM1	Q8N682	238 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	ZNF781	Q8N8C0	355 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	LRRC75A	Q8NAA5	344 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	OR11H1	Q8NG94	326 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	GPR32P1	Q8NGA4	272 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	OR51A7	Q8NH64	312 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	LIPH	Q8WWY8	451 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	RPL3L	Q92901	407 aa	Known RBP	4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	ELAC2	Q9BQ52	826 aa	Known RBP	4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	YY1AP1	Q9H869	796 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	TBC1D23	Q9NUY8	699 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	GRHPR	Q9UBQ7	328 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	ADAM18	Q9Y3Q7	739 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	N6AMT1	Q9Y5N5	214 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	SNX13	Q9Y5W8	968 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	LHFPL6	Q9Y693	200 aa		4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	SIRT4	Q9Y6E7	314 aa	Predicted RBP	4.12	□□□□□ -1.75
PTPN4-210	ENST00000485247	TRAV27	A0A087WT01	109 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	PRSS37	A4D1T9	235 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	CXorf65	A6NEN9	183 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	C17orf98	A8MV24	154 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247		A8MZ25	164 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247		M0QX08	132 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247		M0QZK8	103 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247		M0R135	149 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	XKRY	O14609	159 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	ITM2A	O43736	263 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	PTP4A3	O75365	173 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	KHDRBS3	O75525	346 aa	Known RBP	4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	TIPRL	O75663	272 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	NXPH3	O95157	252 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	OR5F1	O95221	314 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	BRI3	O95415	125 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	VIM	P08670	466 aa	Known RBP	4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	PSG2	P11465	335 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	GLRA1	P23415	457 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	BRS3	P32247	399 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	CDX1	P47902	265 aa	Predicted RBP	4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	DLX6	P56179	175 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	TPTE	P56180	551 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	HIST1H3A	P68431	136 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	GABPB1	Q06547	395 aa	Predicted RBP	4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	IL18R1	Q13478	541 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	FHL3	Q13643	280 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	PMS2P11	Q13670	270 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	MEST	Q5EB52	335 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	CXorf66	Q5JRM2	361 aa	Predicted RBP	4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	PLAC9	Q5JTB6	97 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	HIST2H3PS2	Q5TEC6	136 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	MINOS1	Q5TGZ0	78 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	ZNF66	Q6ZN08	573 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	HIST2H3A	Q71DI3	136 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	LINC00346	Q8IVM7	164 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	TMEM239	Q8WW34	195 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	ZNF799	Q96GE5	643 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247		Q96M85	177 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	NABP2	Q9BQ15	211 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	PAIP1	Q9H074	479 aa	Known RBP	4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	TLNRD1	Q9H1K6	362 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	C1orf21	Q9H246	121 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	SYT4	Q9H2B2	425 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	SP140L	Q9H930	580 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	ZNF222	Q9UK12	451 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	MED31	Q9Y3C7	131 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	MINOS1-NBL1	R4GNA1	71 aa		4.11	□□□□□ -1.75
PTPN4-210	ENST00000485247	HECTD4	Q9Y4D8	3996 aa		4.11	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms