RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 PP6455Q8WZ26 134 aa11.06□□□□□ -0.64
VPS33A-202ENST00000451053 DIRC2Q96SL1 478 aa11.06□□□□□ -0.64
VPS33A-202ENST00000451053 ADAT1Q9BUB4 502 aaKnown RBP11.06□□□□□ -0.64
VPS33A-202ENST00000451053 NEK6Q9HC98 313 aa11.06□□□□□ -0.64
VPS33A-202ENST00000451053 NKIRAS2Q9NYR9 191 aa11.06□□□□□ -0.64
VPS33A-202ENST00000451053 FLNBO75369 2602 aaKnown RBP11.06□□□□□ -0.64
VPS33A-202ENST00000451053 SPG11Q96JI7 2443 aa11.06□□□□□ -0.64
VPS33A-202ENST00000451053 LRBAP50851 2863 aa11.06□□□□□ -0.64
VPS33A-202ENST00000451053 USF3Q68DE3 2245 aa11.05□□□□□ -0.64
VPS33A-202ENST00000451053 IGHV3-64DA0A0J9YX35 117 aa11.05□□□□□ -0.64
VPS33A-202ENST00000451053 MEGF11A6BM72 1044 aa11.05□□□□□ -0.64
VPS33A-202ENST00000451053 ZNF850A8MQ14 1090 aa11.05□□□□□ -0.64
VPS33A-202ENST00000451053 TPD52L2O43399 206 aaKnown RBP11.05□□□□□ -0.64
VPS33A-202ENST00000451053 SSX4O60224 188 aa11.05□□□□□ -0.64
VPS33A-202ENST00000451053 F12P00748 615 aaPredicted RBP11.05□□□□□ -0.64
VPS33A-202ENST00000451053 CST4P01036 141 aa11.05□□□□□ -0.64
VPS33A-202ENST00000451053 CD55P08174 381 aa11.05□□□□□ -0.64
VPS33A-202ENST00000451053 SRMP19623 302 aa11.05□□□□□ -0.64
VPS33A-202ENST00000451053 SOX6P35712 828 aa11.05□□□□□ -0.64
VPS33A-202ENST00000451053 HNRNPA0Q13151 305 aaKnown RBP11.05□□□□□ -0.64
VPS33A-202ENST00000451053 PRDX4Q13162 271 aa11.05□□□□□ -0.64
VPS33A-202ENST00000451053 OR8G1Q15617 311 aa11.05□□□□□ -0.64
VPS33A-202ENST00000451053 CNPY1Q3B7I2 92 aa11.05□□□□□ -0.64
VPS33A-202ENST00000451053 DMRTC1Q5HYR2 192 aa11.05□□□□□ -0.64
VPS33A-202ENST00000451053 FAM209AQ5JX71 171 aa11.05□□□□□ -0.64
VPS33A-202ENST00000451053 NDNFQ8TB73 568 aa11.05□□□□□ -0.64
VPS33A-202ENST00000451053 UBASH3BQ8TF42 649 aa11.05□□□□□ -0.64
VPS33A-202ENST00000451053 ITLN1Q8WWA0 313 aa11.05□□□□□ -0.64
VPS33A-202ENST00000451053 NEU4Q8WWR8 484 aaPredicted RBP11.05□□□□□ -0.64
VPS33A-202ENST00000451053 PIGCQ92535 297 aa11.05□□□□□ -0.64
VPS33A-202ENST00000451053 FGGYQ96C11 551 aa11.05□□□□□ -0.64
VPS33A-202ENST00000451053 TECTBQ96PL2 329 aa11.05□□□□□ -0.64
VPS33A-202ENST00000451053 OR2V2Q96R30 315 aa11.05□□□□□ -0.64
VPS33A-202ENST00000451053 SLC22A4Q9H015 551 aa11.05□□□□□ -0.64
VPS33A-202ENST00000451053 RNF167Q9H6Y7 350 aa11.05□□□□□ -0.64
VPS33A-202ENST00000451053 DECR2Q9NUI1 292 aa11.05□□□□□ -0.64
VPS33A-202ENST00000451053 ITGB1BP2Q9UKP3 347 aa11.05□□□□□ -0.64
VPS33A-202ENST00000451053 POLQO75417 2590 aa11.05□□□□□ -0.64
VPS33A-202ENST00000451053 A0A1W2PPK0 400 aa11.04□□□□□ -0.64
VPS33A-202ENST00000451053 LYNX1G3V0Z9 82 aa11.04□□□□□ -0.64
VPS33A-202ENST00000451053 PIN1P1O15428 100 aa11.04□□□□□ -0.64
VPS33A-202ENST00000451053 GMDSO60547 372 aa11.04□□□□□ -0.64
VPS33A-202ENST00000451053 TMEM127O75204 238 aa11.04□□□□□ -0.64
VPS33A-202ENST00000451053 LYNX1P0DP58 116 aa11.04□□□□□ -0.64
VPS33A-202ENST00000451053 RAB3AP20336 220 aa11.04□□□□□ -0.64
VPS33A-202ENST00000451053 RAB3BP20337 219 aa11.04□□□□□ -0.64
VPS33A-202ENST00000451053 TNFSF4P23510 183 aa11.04□□□□□ -0.64
VPS33A-202ENST00000451053 SDC2P34741 201 aa11.04□□□□□ -0.64
VPS33A-202ENST00000451053 RBMXP38159 391 aaKnown RBP11.04□□□□□ -0.64
VPS33A-202ENST00000451053 RANBP1P43487 201 aa11.04□□□□□ -0.64
VPS33A-202ENST00000451053 ART1P52961 327 aa11.04□□□□□ -0.64
VPS33A-202ENST00000451053 DGUOKQ16854 277 aa11.04□□□□□ -0.64
VPS33A-202ENST00000451053 FAM27D1Q5T7N8 215 aa11.04□□□□□ -0.64
VPS33A-202ENST00000451053 TMEM42Q69YG0 159 aa11.04□□□□□ -0.64
VPS33A-202ENST00000451053 UTS2BQ765I0 119 aa11.04□□□□□ -0.64
VPS33A-202ENST00000451053 KRT74Q7RTS7 529 aa11.04□□□□□ -0.64
VPS33A-202ENST00000451053 KRTAP1-3Q8IUG1 177 aa11.04□□□□□ -0.64
VPS33A-202ENST00000451053 NKAIN3Q8N8D7 197 aa11.04□□□□□ -0.64
VPS33A-202ENST00000451053 DYNC2LI1Q8TCX1 351 aa11.04□□□□□ -0.64
VPS33A-202ENST00000451053 HPSE2Q8WWQ2 592 aa11.04□□□□□ -0.64
VPS33A-202ENST00000451053 YIPF5Q969M3 257 aa11.04□□□□□ -0.64
VPS33A-202ENST00000451053 ADAT3Q96EY9 351 aaPredicted RBP11.04□□□□□ -0.64
VPS33A-202ENST00000451053 MEGF10Q96KG7 1140 aa11.04□□□□□ -0.64
VPS33A-202ENST00000451053 FOXC2Q99958 501 aa11.04□□□□□ -0.64
VPS33A-202ENST00000451053 CHST5Q9GZS9 411 aa11.04□□□□□ -0.64
VPS33A-202ENST00000451053 FGF23Q9GZV9 251 aaPredicted RBP11.04□□□□□ -0.64
VPS33A-202ENST00000451053 PPIL3Q9H2H8 161 aaKnown RBP11.04□□□□□ -0.64
VPS33A-202ENST00000451053 ZCCHC4Q9H5U6 513 aa11.04□□□□□ -0.64
VPS33A-202ENST00000451053 SAP30LQ9HAJ7 183 aa11.04□□□□□ -0.64
VPS33A-202ENST00000451053 BARX1Q9HBU1 254 aaPredicted RBP11.04□□□□□ -0.64
VPS33A-202ENST00000451053 PTTG2Q9NZH5 202 aa11.04□□□□□ -0.64
VPS33A-202ENST00000451053 CCDC59Q9P031 241 aaKnown RBP11.04□□□□□ -0.64
VPS33A-202ENST00000451053 IL19Q9UHD0 177 aa11.04□□□□□ -0.64
VPS33A-202ENST00000451053 MPC1Q9Y5U8 109 aa11.04□□□□□ -0.64
VPS33A-202ENST00000451053 PDZD2O15018 2839 aa11.04□□□□□ -0.64
VPS33A-202ENST00000451053 MAGEB3O15480 346 aa11.03□□□□□ -0.64
VPS33A-202ENST00000451053 CDC14BO60729 498 aa11.03□□□□□ -0.64
VPS33A-202ENST00000451053 ALX3O95076 343 aa11.03□□□□□ -0.64
VPS33A-202ENST00000451053 OCMP0CE72 109 aaPredicted RBP11.03□□□□□ -0.64
VPS33A-202ENST00000451053 DAOP14920 347 aa11.03□□□□□ -0.64
VPS33A-202ENST00000451053 IGFBP3P17936 291 aaPredicted RBP11.03□□□□□ -0.64
VPS33A-202ENST00000451053 COL8A2P25067 703 aa11.03□□□□□ -0.64
VPS33A-202ENST00000451053 TGFBR1P36897 503 aa11.03□□□□□ -0.64
VPS33A-202ENST00000451053 RPS19P39019 145 aaKnown RBP11.03□□□□□ -0.64
VPS33A-202ENST00000451053 CD200P41217 278 aa11.03□□□□□ -0.64
VPS33A-202ENST00000451053 RORCP51449 518 aa11.03□□□□□ -0.64
VPS33A-202ENST00000451053 MXD1Q05195 221 aa11.03□□□□□ -0.64
VPS33A-202ENST00000451053 MAB21L1Q13394 359 aa11.03□□□□□ -0.64
VPS33A-202ENST00000451053 CNN3Q15417 329 aaKnown RBP11.03□□□□□ -0.64
VPS33A-202ENST00000451053 TESK1Q15569 626 aa11.03□□□□□ -0.64
VPS33A-202ENST00000451053 CEP78Q5JTW2 689 aa11.03□□□□□ -0.64
VPS33A-202ENST00000451053 Q5PR19 223 aa11.03□□□□□ -0.64
VPS33A-202ENST00000451053 CLVS2Q5SYC1 327 aa11.03□□□□□ -0.64
VPS33A-202ENST00000451053 PRAMEF6Q5VXH4 476 aa11.03□□□□□ -0.64
VPS33A-202ENST00000451053 WDR86Q86TI4 376 aa11.03□□□□□ -0.64
VPS33A-202ENST00000451053 TGIF2LYQ8IUE0 185 aa11.03□□□□□ -0.64
VPS33A-202ENST00000451053 ZDHHC23Q8IYP9 409 aa11.03□□□□□ -0.64
VPS33A-202ENST00000451053 ZNF525Q8N782 197 aa11.03□□□□□ -0.64
VPS33A-202ENST00000451053 OR1M1Q8NGA1 313 aa11.03□□□□□ -0.64
VPS33A-202ENST00000451053 OR8S1Q8NH09 359 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms