RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 GALNT4Q8N4A0 578 aa16.92■□□□□ 0.3
SHMT1-209ENST00000582653 TMEM86BQ8N661 226 aa16.92■□□□□ 0.3
SHMT1-209ENST00000582653 OR5T2Q8NGG2 359 aa16.92■□□□□ 0.3
SHMT1-209ENST00000582653 OR8B12Q8NGG6 310 aa16.92■□□□□ 0.3
SHMT1-209ENST00000582653 ST8SIA4Q92187 359 aa16.92■□□□□ 0.3
SHMT1-209ENST00000582653 PIGCQ92535 297 aa16.92■□□□□ 0.3
SHMT1-209ENST00000582653 MICU1Q9BPX6 476 aa16.92■□□□□ 0.3
SHMT1-209ENST00000582653 FGF23Q9GZV9 251 aaPredicted RBP16.92■□□□□ 0.3
SHMT1-209ENST00000582653 RGCCQ9H4X1 137 aa16.92■□□□□ 0.3
SHMT1-209ENST00000582653 SLC25A19Q9HC21 320 aa16.92■□□□□ 0.3
SHMT1-209ENST00000582653 FAM53CQ9NYF3 392 aa16.92■□□□□ 0.3
SHMT1-209ENST00000582653 LAMP5Q9UJQ1 280 aa16.92■□□□□ 0.3
SHMT1-209ENST00000582653 LRP12Q9Y561 859 aa16.92■□□□□ 0.3
SHMT1-209ENST00000582653 TIPRLO75663 272 aa16.91■□□□□ 0.3
SHMT1-209ENST00000582653 MRPL3P09001 348 aaKnown RBP16.91■□□□□ 0.3
SHMT1-209ENST00000582653 MUC1P15941 1255 aaPredicted RBP16.91■□□□□ 0.3
SHMT1-209ENST00000582653 OMGP23515 440 aa16.91■□□□□ 0.3
SHMT1-209ENST00000582653 CRISP1P54107 249 aa16.91■□□□□ 0.3
SHMT1-209ENST00000582653 PDCD1Q15116 288 aa16.91■□□□□ 0.3
SHMT1-209ENST00000582653 SNAPC1Q16533 368 aa16.91■□□□□ 0.3
SHMT1-209ENST00000582653 KRT77Q7Z794 578 aa16.91■□□□□ 0.3
SHMT1-209ENST00000582653 GATAD2BQ8WXI9 593 aa16.91■□□□□ 0.3
SHMT1-209ENST00000582653 RPL3LQ92901 407 aaKnown RBP16.91■□□□□ 0.3
SHMT1-209ENST00000582653 SIRPDQ9H106 197 aa16.91■□□□□ 0.3
SHMT1-209ENST00000582653 TLNRD1Q9H1K6 362 aa16.91■□□□□ 0.3
SHMT1-209ENST00000582653 MPC1Q9Y5U8 109 aa16.91■□□□□ 0.3
SHMT1-209ENST00000582653 MEGF8Q7Z7M0 2845 aa16.9■□□□□ 0.3
SHMT1-209ENST00000582653 ANXA2P2A6NMY6 339 aa16.9■□□□□ 0.3
SHMT1-209ENST00000582653 GSC2O15499 205 aa16.9■□□□□ 0.3
SHMT1-209ENST00000582653 CRYBA1P05813 215 aa16.9■□□□□ 0.3
SHMT1-209ENST00000582653 AMY2BP19961 511 aa16.9■□□□□ 0.3
SHMT1-209ENST00000582653 DAPP51397 102 aa16.9■□□□□ 0.3
SHMT1-209ENST00000582653 PSMA6P60900 246 aaKnown RBP16.9■□□□□ 0.3
SHMT1-209ENST00000582653 IL5RAQ01344 420 aa16.9■□□□□ 0.3
SHMT1-209ENST00000582653 METTL11BQ5VVY1 283 aa16.9■□□□□ 0.3
SHMT1-209ENST00000582653 TREML4Q6UXN2 200 aa16.9■□□□□ 0.3
SHMT1-209ENST00000582653 KCTD8Q6ZWB6 473 aa16.9■□□□□ 0.3
SHMT1-209ENST00000582653 FAM216BQ8N7L0 139 aa16.9■□□□□ 0.3
SHMT1-209ENST00000582653 OR5P3Q8WZ94 311 aa16.9■□□□□ 0.3
SHMT1-209ENST00000582653 LHX4Q969G2 390 aa16.9■□□□□ 0.3
SHMT1-209ENST00000582653 RNF170Q96K19 258 aa16.9■□□□□ 0.3
SHMT1-209ENST00000582653 TEAD3Q99594 435 aa16.9■□□□□ 0.3
SHMT1-209ENST00000582653 PKP2Q99959 881 aa16.9■□□□□ 0.3
SHMT1-209ENST00000582653 RTL8AQ9BWD3 113 aa16.9■□□□□ 0.3
SHMT1-209ENST00000582653 TEX12Q9BXU0 123 aa16.9■□□□□ 0.3
SHMT1-209ENST00000582653 CADM1Q9BY67 442 aaKnown RBP16.9■□□□□ 0.3
SHMT1-209ENST00000582653 WDR13Q9H1Z4 485 aa16.9■□□□□ 0.3
SHMT1-209ENST00000582653 CNTD2Q9H8S5 307 aa16.9■□□□□ 0.3
SHMT1-209ENST00000582653 PAPOLBQ9NRJ5 636 aaKnown RBP16.9■□□□□ 0.3
SHMT1-209ENST00000582653 SNTG1Q9NSN8 517 aa16.9■□□□□ 0.3
SHMT1-209ENST00000582653 ACOXLQ9NUZ1 547 aa16.9■□□□□ 0.3
SHMT1-209ENST00000582653 POMT1Q9Y6A1 747 aa16.9■□□□□ 0.3
SHMT1-209ENST00000582653 CCDC182A6NF36 153 aa16.89■□□□□ 0.29
SHMT1-209ENST00000582653 CST4P01036 141 aa16.89■□□□□ 0.29
SHMT1-209ENST00000582653 TFF1P04155 84 aa16.89■□□□□ 0.29
SHMT1-209ENST00000582653 MELTFP08582 738 aa16.89■□□□□ 0.29
SHMT1-209ENST00000582653 PTGES3Q15185 160 aaKnown RBP16.89■□□□□ 0.29
SHMT1-209ENST00000582653 DMRTC1Q5HYR2 192 aa16.89■□□□□ 0.29
SHMT1-209ENST00000582653 FIP1L1Q6UN15 594 aaKnown RBP16.89■□□□□ 0.29
SHMT1-209ENST00000582653 BCDIN3DQ7Z5W3 292 aaKnown RBP16.89■□□□□ 0.29
SHMT1-209ENST00000582653 PDZD9Q8IXQ8 264 aa16.89■□□□□ 0.29
SHMT1-209ENST00000582653 FTMTQ8N4E7 242 aa16.89■□□□□ 0.29
SHMT1-209ENST00000582653 SCCPDHQ8NBX0 429 aa16.89■□□□□ 0.29
SHMT1-209ENST00000582653 HPSE2Q8WWQ2 592 aa16.89■□□□□ 0.29
SHMT1-209ENST00000582653 UTP4Q969X6 686 aaKnown RBP16.89■□□□□ 0.29
SHMT1-209ENST00000582653 NRBF2Q96F24 287 aa16.89■□□□□ 0.29
SHMT1-209ENST00000582653 TTTY10Q9BZA0 68 aa16.89■□□□□ 0.29
SHMT1-209ENST00000582653 CHIAQ9BZP6 476 aa16.89■□□□□ 0.29
SHMT1-209ENST00000582653 YIPF3Q9GZM5 350 aa16.89■□□□□ 0.29
SHMT1-209ENST00000582653 NIPAL2Q9H841 368 aa16.89■□□□□ 0.29
SHMT1-209ENST00000582653 BEX1Q9HBH7 125 aa16.89■□□□□ 0.29
SHMT1-209ENST00000582653 RPUSD1Q9UJJ7 312 aaKnown RBP16.89■□□□□ 0.29
SHMT1-209ENST00000582653 IGHV1-69DA0A0B4J2H0 117 aa16.88■□□□□ 0.29
SHMT1-209ENST00000582653 PRR32B1ATL7 298 aa16.88■□□□□ 0.29
SHMT1-209ENST00000582653 KCNAB3O43448 404 aa16.88■□□□□ 0.29
SHMT1-209ENST00000582653 IGHV1-69P01742 117 aa16.88■□□□□ 0.29
SHMT1-209ENST00000582653 IKZF1Q13422 519 aa16.88■□□□□ 0.29
SHMT1-209ENST00000582653 SNCBQ16143 134 aa16.88■□□□□ 0.29
SHMT1-209ENST00000582653 FAHD1Q6P587 224 aa16.88■□□□□ 0.29
SHMT1-209ENST00000582653 OR4F5Q8NH21 305 aa16.88■□□□□ 0.29
SHMT1-209ENST00000582653 TBC1D15Q8TC07 691 aa16.88■□□□□ 0.29
SHMT1-209ENST00000582653 PPP1R14AQ96A00 147 aa16.88■□□□□ 0.29
SHMT1-209ENST00000582653 DMRTB1Q96MA1 342 aa16.88■□□□□ 0.29
SHMT1-209ENST00000582653 FAM206AQ9NX38 181 aa16.88■□□□□ 0.29
SHMT1-209ENST00000582653 HAO2Q9NYQ3 351 aa16.88■□□□□ 0.29
SHMT1-209ENST00000582653 C1RLQ9NZP8 487 aa16.88■□□□□ 0.29
SHMT1-209ENST00000582653 COPS3Q9UNS2 423 aa16.88■□□□□ 0.29
SHMT1-209ENST00000582653 TMEM269A0A1B0GVZ9 245 aa16.87■□□□□ 0.29
SHMT1-209ENST00000582653 M0R129 80 aa16.87■□□□□ 0.29
SHMT1-209ENST00000582653 AKR7A2O43488 359 aa16.87■□□□□ 0.29
SHMT1-209ENST00000582653 PRKYO43930 277 aa16.87■□□□□ 0.29
SHMT1-209ENST00000582653 MITFO75030 526 aaPredicted RBP16.87■□□□□ 0.29
SHMT1-209ENST00000582653 SELLP14151 372 aa16.87■□□□□ 0.29
SHMT1-209ENST00000582653 KCTD18Q6PI47 426 aaPredicted RBP16.87■□□□□ 0.29
SHMT1-209ENST00000582653 SLC36A1Q7Z2H8 476 aa16.87■□□□□ 0.29
SHMT1-209ENST00000582653 ZDHHC23Q8IYP9 409 aa16.87■□□□□ 0.29
SHMT1-209ENST00000582653 KIR3DL3Q8N743 410 aa16.87■□□□□ 0.29
SHMT1-209ENST00000582653 LY6G5BQ8NDX9 201 aa16.87■□□□□ 0.29
SHMT1-209ENST00000582653 SSMEM1Q8WWF3 244 aa16.87■□□□□ 0.29
SHMT1-209ENST00000582653 KPTNQ9Y664 436 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms