RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 DEFB133Q30KQ1 61 aa11.81□□□□□ -0.52
CLK3-206ENST00000562078 SLC22A6Q4U2R8 563 aa11.81□□□□□ -0.52
CLK3-206ENST00000562078 ZPLD1Q8TCW7 415 aa11.81□□□□□ -0.52
CLK3-206ENST00000562078 INTS14Q96SY0 518 aa11.81□□□□□ -0.52
CLK3-206ENST00000562078 ZPBPQ9BS86 351 aa11.81□□□□□ -0.52
CLK3-206ENST00000562078 SLC35B3Q9H1N7 401 aa11.81□□□□□ -0.52
CLK3-206ENST00000562078 PDE7BQ9NP56 450 aa11.81□□□□□ -0.52
CLK3-206ENST00000562078 TNRC6BQ9UPQ9 1833 aaKnown RBP11.81□□□□□ -0.52
CLK3-206ENST00000562078 M0R143 59 aa11.81□□□□□ -0.52
CLK3-206ENST00000562078 STK17BO94768 372 aa11.81□□□□□ -0.52
CLK3-206ENST00000562078 SLC35E2P0CK97 266 aa11.81□□□□□ -0.52
CLK3-206ENST00000562078 TDGF1P13385 188 aa11.81□□□□□ -0.52
CLK3-206ENST00000562078 RAB32Q13637 225 aa11.81□□□□□ -0.52
CLK3-206ENST00000562078 OR1Q1Q15612 314 aa11.81□□□□□ -0.52
CLK3-206ENST00000562078 PMS2CLQ68D20 193 aa11.81□□□□□ -0.52
CLK3-206ENST00000562078 OR9K2Q8NGE7 335 aa11.81□□□□□ -0.52
CLK3-206ENST00000562078 HPSE2Q8WWQ2 592 aa11.81□□□□□ -0.52
CLK3-206ENST00000562078 SNX22Q96L94 193 aa11.81□□□□□ -0.52
CLK3-206ENST00000562078 SMIM3Q9BZL3 60 aa11.81□□□□□ -0.52
CLK3-206ENST00000562078 SOHLH2Q9NX45 425 aa11.81□□□□□ -0.52
CLK3-206ENST00000562078 ARID1BQ8NFD5 2236 aaPredicted RBP11.81□□□□□ -0.52
CLK3-206ENST00000562078 LOC100289279A0A1B0GTE1 492 aa11.8□□□□□ -0.52
CLK3-206ENST00000562078 HRKO00198 91 aa11.8□□□□□ -0.52
CLK3-206ENST00000562078 FOXS1O43638 330 aa11.8□□□□□ -0.52
CLK3-206ENST00000562078 TACR3P29371 465 aa11.8□□□□□ -0.52
CLK3-206ENST00000562078 GGTLC2Q14390 218 aa11.8□□□□□ -0.52
CLK3-206ENST00000562078 MOGAT2Q3SYC2 334 aa11.8□□□□□ -0.52
CLK3-206ENST00000562078 CDC6Q99741 560 aa11.8□□□□□ -0.52
CLK3-206ENST00000562078 NELFAQ9H3P2 528 aa11.8□□□□□ -0.52
CLK3-206ENST00000562078 FER1L5A0AVI2 2057 aa11.8□□□□□ -0.52
CLK3-206ENST00000562078 PI4KAP42356 2102 aa11.8□□□□□ -0.52
CLK3-206ENST00000562078 WDR87Q6ZQQ6 2873 aa11.8□□□□□ -0.52
CLK3-206ENST00000562078 TRBV5-5A0A0J9YX44 114 aa11.8□□□□□ -0.52
CLK3-206ENST00000562078 C1QL1O75973 258 aa11.8□□□□□ -0.52
CLK3-206ENST00000562078 LINC00614P0C842 121 aa11.8□□□□□ -0.52
CLK3-206ENST00000562078 GNALP38405 381 aa11.8□□□□□ -0.52
CLK3-206ENST00000562078 DIO1P49895 249 aa11.8□□□□□ -0.52
CLK3-206ENST00000562078 SCAND1P57086 179 aa11.8□□□□□ -0.52
CLK3-206ENST00000562078 S100A10P60903 97 aa11.8□□□□□ -0.52
CLK3-206ENST00000562078 CYCSP99999 105 aaKnown RBP11.8□□□□□ -0.52
CLK3-206ENST00000562078 PLAURQ03405 335 aa11.8□□□□□ -0.52
CLK3-206ENST00000562078 RAB11BQ15907 218 aa11.8□□□□□ -0.52
CLK3-206ENST00000562078 DCAF10Q5QP82 559 aa11.8□□□□□ -0.52
CLK3-206ENST00000562078 ARHGAP11AQ6P4F7 1023 aa11.8□□□□□ -0.52
CLK3-206ENST00000562078 LEG1Q6P5S2 330 aa11.8□□□□□ -0.52
CLK3-206ENST00000562078 GVQW1Q8N7I0 195 aa11.8□□□□□ -0.52
CLK3-206ENST00000562078 TMEM105Q8N8V8 129 aa11.8□□□□□ -0.52
CLK3-206ENST00000562078 OR13C9Q8NGT0 318 aa11.8□□□□□ -0.52
CLK3-206ENST00000562078 NMNAT3Q96T66 252 aa11.8□□□□□ -0.52
CLK3-206ENST00000562078 PRRT1Q99946 306 aa11.8□□□□□ -0.52
CLK3-206ENST00000562078 LILRA5A6NI73 299 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 PIAS2O75928 621 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 LYPD3O95274 346 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 LYL1P12980 280 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 TAGLN2P37802 199 aaKnown RBP11.79□□□□□ -0.52
CLK3-206ENST00000562078 NPY4RP50391 375 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 SOHLH1Q5JUK2 328 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 ZNF584Q8IVC4 421 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 MAML2Q8IZL2 1156 aaPredicted RBP11.79□□□□□ -0.52
CLK3-206ENST00000562078 PLPP7Q8NBV4 271 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 CNTNAP3Q9BZ76 1288 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 KLHDC2Q9Y2U9 406 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 IER3IP1Q9Y5U9 82 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 IGHV5-51A0A0C4DH38 117 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 LMO7DNF2Z398 122 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 LDLRAD4O15165 306 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 NKX2-2O95096 273 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 CST4P01036 141 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 CHATP28329 748 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 BTG2P78543 158 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 PSG6Q00889 435 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 GAGE1Q13065 139 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 SLC9A3R2Q15599 337 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 NNATQ16517 81 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 SAPCD1Q5SSQ6 148 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 ZNF684Q5T5D7 378 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 ZNF101Q8IZC7 436 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 ZNF248Q8NDW4 579 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 OR4N2Q8NGD1 307 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 TERB2Q8NHR7 220 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 GRHL3Q8TE85 626 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 RAB39BQ96DA2 213 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 OR10C1Q96KK4 312 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 RARRES2Q99969 163 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 MED31Q9Y3C7 131 aa11.79□□□□□ -0.52
CLK3-206ENST00000562078 TMEM269A0A1B0GVZ9 245 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 RAB27BO00194 218 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 DVL1O14640 695 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 GEMIN2O14893 280 aaKnown RBP11.78□□□□□ -0.52
CLK3-206ENST00000562078 UPK3AO75631 287 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 CRYABP02511 175 aaKnown RBP11.78□□□□□ -0.52
CLK3-206ENST00000562078 CD37P11049 281 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 RPS2P15880 293 aaKnown RBP11.78□□□□□ -0.52
CLK3-206ENST00000562078 TMEM11P17152 192 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 THBS4P35443 961 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 ARRB1P49407 418 aaPredicted RBP11.78□□□□□ -0.52
CLK3-206ENST00000562078 EMDP50402 254 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 FHL1Q13642 323 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 HNF4GQ14541 408 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 MED25Q71SY5 747 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms