RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 ZNF275Q9NSD4 429 aaPredicted RBP10.12□□□□□ -0.79
LDLR-212ENST00000560467 CISD1Q9NZ45 108 aaKnown RBP10.12□□□□□ -0.79
LDLR-212ENST00000560467 NPAP1Q9NZP6 1156 aa10.12□□□□□ -0.79
LDLR-212ENST00000560467 CRNNQ9UBG3 495 aaPredicted RBP10.12□□□□□ -0.79
LDLR-212ENST00000560467 TRAV1-2A0A0B4J238 106 aa10.11□□□□□ -0.79
LDLR-212ENST00000560467 LOC390937A0A1W2PQ73 354 aa10.11□□□□□ -0.79
LDLR-212ENST00000560467 DHRS3O75911 302 aa10.11□□□□□ -0.79
LDLR-212ENST00000560467 CDRT1O95170 752 aa10.11□□□□□ -0.79
LDLR-212ENST00000560467 CECR9P0C854 216 aa10.11□□□□□ -0.79
LDLR-212ENST00000560467 SRMP19623 302 aa10.11□□□□□ -0.79
LDLR-212ENST00000560467 NCS1P62166 190 aa10.11□□□□□ -0.79
LDLR-212ENST00000560467 MOGQ16653 247 aa10.11□□□□□ -0.79
LDLR-212ENST00000560467 RSPO1Q2MKA7 263 aaPredicted RBP10.11□□□□□ -0.79
LDLR-212ENST00000560467 ZNF718Q3SXZ3 478 aa10.11□□□□□ -0.79
LDLR-212ENST00000560467 SLC16A12Q6ZSM3 486 aa10.11□□□□□ -0.79
LDLR-212ENST00000560467 NAA40Q86UY6 237 aa10.11□□□□□ -0.79
LDLR-212ENST00000560467 PP6455Q8WZ26 134 aa10.11□□□□□ -0.79
LDLR-212ENST00000560467 RPL3LQ92901 407 aaKnown RBP10.11□□□□□ -0.79
LDLR-212ENST00000560467 SGK3Q96BR1 496 aa10.11□□□□□ -0.79
LDLR-212ENST00000560467 FGGYQ96C11 551 aa10.11□□□□□ -0.79
LDLR-212ENST00000560467 MS4A3Q96HJ5 214 aa10.11□□□□□ -0.79
LDLR-212ENST00000560467 CACNG6Q9BXT2 260 aa10.11□□□□□ -0.79
LDLR-212ENST00000560467 NAA50Q9GZZ1 169 aaKnown RBP10.11□□□□□ -0.79
LDLR-212ENST00000560467 RBM38Q9H0Z9 239 aaKnown RBP10.11□□□□□ -0.79
LDLR-212ENST00000560467 NOX3Q9HBY0 568 aa10.11□□□□□ -0.79
LDLR-212ENST00000560467 NOX4Q9NPH5 578 aa10.11□□□□□ -0.79
LDLR-212ENST00000560467 CDC42EP3Q9UKI2 254 aa10.11□□□□□ -0.79
LDLR-212ENST00000560467 IGHV1-18A0A0C4DH31 117 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 TRBV5-5A0A0J9YX44 114 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 A0A1W2PPK0 400 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 ZNF503-AS2A6NEH8 195 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 ANXA2P2A6NMY6 339 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 ANKRD30BLA7E2S9 258 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 ABCD4O14678 606 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 TMEM127O75204 238 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 IGLV1-44P01699 117 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 UCHL1P09936 223 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 ZNF16P17020 682 aaPredicted RBP10.1□□□□□ -0.79
LDLR-212ENST00000560467 RAB3AP20336 220 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 CCL1P22362 96 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 SPOCK1Q08629 439 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 ZBTB37Q5TC79 503 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 UNQ9370/PRO34162Q6UXP9 181 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 COLCA1Q6ZS62 124 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 PRSS45Q7RTY3 260 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 ZNF584Q8IVC4 421 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 OR1J1Q8NGS3 322 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 PPP1R14AQ96A00 147 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 FOXRED1Q96CU9 486 aaPredicted RBP10.1□□□□□ -0.79
LDLR-212ENST00000560467 TECTBQ96PL2 329 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 DERL3Q96Q80 235 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 DCUN1D5Q9BTE7 237 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 TPK1Q9H3S4 243 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 ABCB9Q9NP78 766 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 FAIMQ9NVQ4 179 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 GPR160Q9UJ42 338 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 POU2F3Q9UKI9 436 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 FOXJ3Q9UPW0 622 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 SLC7A11Q9UPY5 501 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 PIGLQ9Y2B2 252 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 STARD10Q9Y365 291 aa10.1□□□□□ -0.79
LDLR-212ENST00000560467 NOP16Q9Y3C1 178 aaKnown RBP10.1□□□□□ -0.79
LDLR-212ENST00000560467 H3BSH0 61 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 FAM157BP0CG42 384 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 RAB3BP20337 219 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 CD40P25942 277 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 SDC2P34741 201 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 THBS4P35443 961 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 GSK3AP49840 483 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 PPP1CBP62140 327 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 RPS11P62280 158 aaKnown RBP eCLIP10.09□□□□□ -0.79
LDLR-212ENST00000560467 NAAAQ02083 359 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 MXD1Q05195 221 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 CNPY1Q3B7I2 92 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 SNAI3Q3KNW1 292 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 GLYATL3Q5SZD4 288 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 AGAP6Q5VW22 663 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 GLT8D1Q68CQ7 371 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 C11orf71Q6IPW1 123 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 MZT2AQ6P582 158 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 SLC22A25Q6T423 547 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 CLEC2AQ6UVW9 174 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 TMEM91Q6ZNR0 172 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 PARP16Q8N5Y8 322 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 ZNF525Q8N782 197 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 PLPP7Q8NBV4 271 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 RNF166Q96A37 237 aaPredicted RBP10.09□□□□□ -0.79
LDLR-212ENST00000560467 SPSB4Q96A44 273 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 ZNF75AQ96N20 296 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 C19orf24Q9BVV8 132 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 BEX2Q9BXY8 128 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 OR51B6Q9H340 312 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 ZCCHC4Q9H5U6 513 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 TMEM138Q9NPI0 162 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 NKIRAS2Q9NYR9 191 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 PTTG3PQ9NZH4 202 aa10.09□□□□□ -0.79
LDLR-212ENST00000560467 PLCE1Q9P212 2302 aa10.08□□□□□ -0.8
LDLR-212ENST00000560467 SVEP1Q4LDE5 3571 aa10.08□□□□□ -0.8
LDLR-212ENST00000560467 TRBV5-7A0A0A0MS05 114 aa10.08□□□□□ -0.8
LDLR-212ENST00000560467 ZNF816-ZNF321PA0A0X1KG74 233 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms