RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 SIRPB1O00241 398 aa14.47□□□□□ -0.09
CUX1-213ENST00000549414 SELENOPP49908 381 aa14.47□□□□□ -0.09
CUX1-213ENST00000549414 ZNF169Q14929 603 aaPredicted RBP14.47□□□□□ -0.09
CUX1-213ENST00000549414 PLGLAQ15195 96 aa14.47□□□□□ -0.09
CUX1-213ENST00000549414 LYG2Q86SG7 212 aa14.47□□□□□ -0.09
CUX1-213ENST00000549414 ZNF285Q96NJ3 590 aa14.47□□□□□ -0.09
CUX1-213ENST00000549414 MUC6Q6W4X9 2439 aa14.47□□□□□ -0.09
CUX1-213ENST00000549414 TOX3O15405 576 aaPredicted RBP14.47□□□□□ -0.09
CUX1-213ENST00000549414 WDR1O75083 606 aa14.47□□□□□ -0.09
CUX1-213ENST00000549414 IFNA17P01571 189 aa14.47□□□□□ -0.09
CUX1-213ENST00000549414 GSTP1P09211 210 aaKnown RBP14.47□□□□□ -0.09
CUX1-213ENST00000549414 TRA2AQ13595 282 aaKnown RBP eCLIP14.47□□□□□ -0.09
CUX1-213ENST00000549414 C6orf201Q7Z4U5 140 aa14.47□□□□□ -0.09
CUX1-213ENST00000549414 TMEM229BQ8NBD8 167 aa14.47□□□□□ -0.09
CUX1-213ENST00000549414 CPNE4Q96A23 557 aaPredicted RBP14.47□□□□□ -0.09
CUX1-213ENST00000549414 ZFP64Q9NPA5 681 aa14.47□□□□□ -0.09
CUX1-213ENST00000549414 DLL4Q9NR61 685 aa14.47□□□□□ -0.09
CUX1-213ENST00000549414 UTRNP46939 3433 aa14.46□□□□□ -0.09
CUX1-213ENST00000549414 TGFBR3LH3BV60 316 aa14.46□□□□□ -0.09
CUX1-213ENST00000549414 LGALS8O00214 317 aa14.46□□□□□ -0.09
CUX1-213ENST00000549414 ASAH2BP0C7U1 165 aa14.46□□□□□ -0.09
CUX1-213ENST00000549414 ERVK-16P61578 105 aa14.46□□□□□ -0.09
CUX1-213ENST00000549414 DHRS2Q13268 280 aa14.46□□□□□ -0.09
CUX1-213ENST00000549414 ESPL1Q14674 2120 aa14.46□□□□□ -0.09
CUX1-213ENST00000549414 RNF141Q8WVD5 230 aa14.46□□□□□ -0.09
CUX1-213ENST00000549414 ASB5Q8WWX0 329 aa14.46□□□□□ -0.09
CUX1-213ENST00000549414 IP6K3Q96PC2 410 aa14.46□□□□□ -0.09
CUX1-213ENST00000549414 OR6C6A6NF89 314 aa14.46□□□□□ -0.09
CUX1-213ENST00000549414 XRCC2O43543 280 aa14.46□□□□□ -0.09
CUX1-213ENST00000549414 FABP6P51161 128 aa14.46□□□□□ -0.09
CUX1-213ENST00000549414 RAB1AP62820 205 aa14.46□□□□□ -0.09
CUX1-213ENST00000549414 RAC1P63000 192 aa14.46□□□□□ -0.09
CUX1-213ENST00000549414 OR2B11Q5JQS5 317 aa14.46□□□□□ -0.09
CUX1-213ENST00000549414 SFRP5Q5T4F7 317 aa14.46□□□□□ -0.09
CUX1-213ENST00000549414 DPPA2Q7Z7J5 298 aa14.46□□□□□ -0.09
CUX1-213ENST00000549414 OR6K3Q8NGY3 331 aa14.46□□□□□ -0.09
CUX1-213ENST00000549414 PP6455Q8WZ26 134 aa14.46□□□□□ -0.09
CUX1-213ENST00000549414 SLC25A31Q9H0C2 315 aa14.46□□□□□ -0.09
CUX1-213ENST00000549414 SF3B6Q9Y3B4 125 aaKnown RBP14.46□□□□□ -0.09
CUX1-213ENST00000549414 ZBTB37Q5TC79 503 aa14.46□□□□□ -0.1
CUX1-213ENST00000549414 TEX261Q6UWH6 196 aa14.46□□□□□ -0.1
CUX1-213ENST00000549414 TFAP2EQ6VUC0 442 aa14.46□□□□□ -0.1
CUX1-213ENST00000549414 KIRREL1Q96J84 757 aa14.46□□□□□ -0.1
CUX1-213ENST00000549414 TMPRSS13Q9BYE2 586 aa14.46□□□□□ -0.1
CUX1-213ENST00000549414 TMEM231Q9H6L2 316 aa14.46□□□□□ -0.1
CUX1-213ENST00000549414 U3KQ87 197 aa14.46□□□□□ -0.1
CUX1-213ENST00000549414 ANKRD20A5PA0PJZ0 165 aa14.45□□□□□ -0.1
CUX1-213ENST00000549414 KRBOX1C9JBD0 128 aa14.45□□□□□ -0.1
CUX1-213ENST00000549414 ATG12O94817 140 aa14.45□□□□□ -0.1
CUX1-213ENST00000549414 ADRB1P08588 477 aa14.45□□□□□ -0.1
CUX1-213ENST00000549414 ISXQ2M1V0 245 aa14.45□□□□□ -0.1
CUX1-213ENST00000549414 ACOT7LQ6ZUV0 252 aa14.45□□□□□ -0.1
CUX1-213ENST00000549414 APOBEC4Q8WW27 367 aaKnown RBP14.45□□□□□ -0.1
CUX1-213ENST00000549414 CACNA1AO00555 2505 aa14.45□□□□□ -0.1
CUX1-213ENST00000549414 SHISA3A0PJX4 238 aa14.45□□□□□ -0.1
CUX1-213ENST00000549414 PTGFRP43088 359 aa14.45□□□□□ -0.1
CUX1-213ENST00000549414 PPP1R1AQ13522 171 aa14.45□□□□□ -0.1
CUX1-213ENST00000549414 TMPRSS7Q7RTY8 843 aa14.45□□□□□ -0.1
CUX1-213ENST00000549414 PNPLA5Q7Z6Z6 429 aaPredicted RBP14.45□□□□□ -0.1
CUX1-213ENST00000549414 CDH26Q8IXH8 852 aa14.45□□□□□ -0.1
CUX1-213ENST00000549414 CMTM3Q96MX0 182 aa14.45□□□□□ -0.1
CUX1-213ENST00000549414 SUCNR1Q9BXA5 334 aa14.45□□□□□ -0.1
CUX1-213ENST00000549414 GPR160Q9UJ42 338 aa14.45□□□□□ -0.1
CUX1-213ENST00000549414 CACNA1DQ01668 2161 aa14.45□□□□□ -0.1
CUX1-213ENST00000549414 TCF20Q9UGU0 1960 aaKnown RBP14.45□□□□□ -0.1
CUX1-213ENST00000549414 MEIKINA0A087WXM9 373 aa14.45□□□□□ -0.1
CUX1-213ENST00000549414 TMEM229AB2RXF0 380 aa14.45□□□□□ -0.1
CUX1-213ENST00000549414 ZNF732B4DXR9 585 aa14.45□□□□□ -0.1
CUX1-213ENST00000549414 TOR1AO14656 332 aa14.45□□□□□ -0.1
CUX1-213ENST00000549414 PIGPP57054 158 aa14.45□□□□□ -0.1
CUX1-213ENST00000549414 SNTB1Q13884 538 aaKnown RBP14.45□□□□□ -0.1
CUX1-213ENST00000549414 TSC22D1Q15714 1073 aa14.45□□□□□ -0.1
CUX1-213ENST00000549414 C3AR1Q16581 482 aa14.45□□□□□ -0.1
CUX1-213ENST00000549414 DEFB108BQ8NET1 73 aa14.45□□□□□ -0.1
CUX1-213ENST00000549414 SARAFQ96BY9 339 aa14.45□□□□□ -0.1
CUX1-213ENST00000549414 FAM212BQ9NTI7 297 aaPredicted RBP14.45□□□□□ -0.1
CUX1-213ENST00000549414 TCFL5Q9UL49 500 aa14.45□□□□□ -0.1
CUX1-213ENST00000549414 ZMIZ1Q9ULJ6 1067 aa14.45□□□□□ -0.1
CUX1-213ENST00000549414 LINC00271P0C7V0 271 aa14.45□□□□□ -0.1
CUX1-213ENST00000549414 GPM6AP51674 278 aa14.45□□□□□ -0.1
CUX1-213ENST00000549414 RAB5BP61020 215 aa14.45□□□□□ -0.1
CUX1-213ENST00000549414 PABPC1L2AQ5JQF8 200 aa14.45□□□□□ -0.1
CUX1-213ENST00000549414 INTS12Q96CB8 462 aaKnown RBP14.45□□□□□ -0.1
CUX1-213ENST00000549414 MED13LQ71F56 2210 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 THSD7BQ9C0I4 1608 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 SLC22A20A6NK97 555 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 TGM6O95932 706 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 RECKO95980 971 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 IFNA1P01562 189 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 RPS4Y1P22090 263 aaKnown RBP14.44□□□□□ -0.1
CUX1-213ENST00000549414 CEBPEQ15744 281 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 ZNF674Q2M3X9 581 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 LHFPL2Q6ZUX7 228 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 OSR2Q8N2R0 312 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 GALNT16Q8N428 558 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 KCNRGQ8N5I3 272 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 SLC26A10Q8NG04 563 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 CT55Q8WUE5 264 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 RTN4IP1Q8WWV3 396 aaPredicted RBP14.44□□□□□ -0.1
CUX1-213ENST00000549414 NTMQ9P121 344 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms