RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 HOXB6P17509 224 aaKnown RBP9.54□□□□□ -0.88
COL6A3-213ENST00000493475 GSK3AP49840 483 aa9.54□□□□□ -0.88
COL6A3-213ENST00000493475 RELBQ01201 579 aa9.54□□□□□ -0.88
COL6A3-213ENST00000493475 ATPAF1Q5TC12 328 aaPredicted RBP9.54□□□□□ -0.88
COL6A3-213ENST00000493475 WDR82Q6UXN9 313 aa9.54□□□□□ -0.88
COL6A3-213ENST00000493475 DEFB107AQ8IZN7 70 aa9.54□□□□□ -0.88
COL6A3-213ENST00000493475 ZNF511Q8NB15 262 aa9.54□□□□□ -0.88
COL6A3-213ENST00000493475 RNF133Q8WVZ7 376 aa9.54□□□□□ -0.88
COL6A3-213ENST00000493475 TAF15Q92804 592 aaKnown RBP eCLIP9.54□□□□□ -0.88
COL6A3-213ENST00000493475 LRGUKQ96M69 825 aa9.54□□□□□ -0.88
COL6A3-213ENST00000493475 DCTN5Q9BTE1 182 aa9.54□□□□□ -0.88
COL6A3-213ENST00000493475 C16orf95Q9H693 158 aa9.54□□□□□ -0.88
COL6A3-213ENST00000493475 ZNF556Q9HAH1 456 aa9.54□□□□□ -0.88
COL6A3-213ENST00000493475 SIRT7Q9NRC8 400 aa9.54□□□□□ -0.88
COL6A3-213ENST00000493475 CMC2Q9NRP2 79 aa9.54□□□□□ -0.88
COL6A3-213ENST00000493475 DNAJC27Q9NZQ0 273 aa9.54□□□□□ -0.88
COL6A3-213ENST00000493475 ZNRD1Q9P1U0 126 aa9.54□□□□□ -0.88
COL6A3-213ENST00000493475 ACTR3BQ9P1U1 418 aa9.54□□□□□ -0.88
COL6A3-213ENST00000493475 SLC25A10Q9UBX3 287 aaPredicted RBP9.54□□□□□ -0.88
COL6A3-213ENST00000493475 SF3B6Q9Y3B4 125 aaKnown RBP9.54□□□□□ -0.88
COL6A3-213ENST00000493475 SAMHD1Q9Y3Z3 626 aaKnown RBP9.54□□□□□ -0.88
COL6A3-213ENST00000493475 TGP01266 2768 aa9.54□□□□□ -0.88
COL6A3-213ENST00000493475 NOTCH1P46531 2555 aa9.54□□□□□ -0.88
COL6A3-213ENST00000493475 TRBV23-1A0A0A0MS06 115 aa9.53□□□□□ -0.88
COL6A3-213ENST00000493475 hCG_38984A0A1B0GV85 526 aa9.53□□□□□ -0.88
COL6A3-213ENST00000493475 C5orf63A6NC05 138 aa9.53□□□□□ -0.88
COL6A3-213ENST00000493475 H0YAE9 185 aa9.53□□□□□ -0.88
COL6A3-213ENST00000493475 SNX3O60493 162 aa9.53□□□□□ -0.88
COL6A3-213ENST00000493475 GASTP01350 101 aa9.53□□□□□ -0.88
COL6A3-213ENST00000493475 LYNP07948 512 aa9.53□□□□□ -0.88
COL6A3-213ENST00000493475 NDUFB7P17568 137 aa9.53□□□□□ -0.88
COL6A3-213ENST00000493475 GABRA5P31644 462 aa9.53□□□□□ -0.88
COL6A3-213ENST00000493475 UBE2E1P51965 193 aa9.53□□□□□ -0.88
COL6A3-213ENST00000493475 PROK1P58294 105 aa9.53□□□□□ -0.88
COL6A3-213ENST00000493475 ZNF121P58317 390 aaPredicted RBP9.53□□□□□ -0.88
COL6A3-213ENST00000493475 POU4F2Q12837 409 aa9.53□□□□□ -0.88
COL6A3-213ENST00000493475 MICAQ29983 383 aa9.53□□□□□ -0.88
COL6A3-213ENST00000493475 OR2T5Q6IEZ7 315 aa9.53□□□□□ -0.88
COL6A3-213ENST00000493475 COMMD2Q86X83 199 aa9.53□□□□□ -0.88
COL6A3-213ENST00000493475 ZDHHC23Q8IYP9 409 aa9.53□□□□□ -0.88
COL6A3-213ENST00000493475 FAM216BQ8N7L0 139 aa9.53□□□□□ -0.88
COL6A3-213ENST00000493475 LY6G5BQ8NDX9 201 aa9.53□□□□□ -0.88
COL6A3-213ENST00000493475 OR51G2Q8NGK0 314 aa9.53□□□□□ -0.88
COL6A3-213ENST00000493475 OR4C13Q8NGP0 309 aa9.53□□□□□ -0.88
COL6A3-213ENST00000493475 OR2T29Q8NH02 315 aa9.53□□□□□ -0.88
COL6A3-213ENST00000493475 ZNF671Q8TAW3 534 aa9.53□□□□□ -0.88
COL6A3-213ENST00000493475 SGK3Q96BR1 496 aa9.53□□□□□ -0.88
COL6A3-213ENST00000493475 PKP2Q99959 881 aa9.53□□□□□ -0.88
COL6A3-213ENST00000493475 BTBD10Q9BSF8 475 aa9.53□□□□□ -0.88
COL6A3-213ENST00000493475 ABHD6Q9BV23 337 aa9.53□□□□□ -0.88
COL6A3-213ENST00000493475 DGCR6LQ9BY27 220 aa9.53□□□□□ -0.88
COL6A3-213ENST00000493475 NMNAT2Q9BZQ4 307 aa9.53□□□□□ -0.88
COL6A3-213ENST00000493475 TLNRD1Q9H1K6 362 aa9.53□□□□□ -0.88
COL6A3-213ENST00000493475 BRD7Q9NPI1 651 aa9.53□□□□□ -0.88
COL6A3-213ENST00000493475 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.53□□□□□ -0.88
COL6A3-213ENST00000493475 ARL2BPQ9Y2Y0 163 aa9.53□□□□□ -0.88
COL6A3-213ENST00000493475 PRR23D1E9PI22 279 aaPredicted RBP9.52□□□□□ -0.89
COL6A3-213ENST00000493475 RNASEK-C17orf49H0YIS7 233 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 H3BUI4 141 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 GNGT2O14610 69 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 ACOT8O14734 319 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 GSC2O15499 205 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 TSPAN9O75954 239 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 SOX14O95416 240 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 CST4P01036 141 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 HMGN1P05114 100 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 PRR23D2P0DMB1 279 aaPredicted RBP9.52□□□□□ -0.89
COL6A3-213ENST00000493475 GLRA1P23415 457 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 MSX2P35548 267 aaPredicted RBP9.52□□□□□ -0.89
COL6A3-213ENST00000493475 MAGEA2P43356 314 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 CAPZA1P52907 286 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 CAV3P56539 151 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 CSNK2BP67870 215 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 SRSF4Q08170 494 aaKnown RBP9.52□□□□□ -0.89
COL6A3-213ENST00000493475 PRDX4Q13162 271 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 STUMQ69YW2 141 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 ASPHD2Q6ICH7 369 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 CYP2R1Q6VVX0 501 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 THAP5Q7Z6K1 395 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 DHFR2Q86XF0 187 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 OR2T6Q8NHC8 308 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 C8orf46Q8TAG6 207 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 THEM6Q8WUY1 208 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 PIGCQ92535 297 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 ITPKCQ96DU7 683 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 RNF170Q96K19 258 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 CLPTM1LQ96KA5 538 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 DDOQ99489 341 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 ARMC1Q9NVT9 282 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 NLKQ9UBE8 527 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 RHBDD3Q9Y3P4 386 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 U3KQV3 271 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 VWFP04275 2813 aa9.52□□□□□ -0.89
COL6A3-213ENST00000493475 ZNF816-ZNF321PA0A0X1KG74 233 aa9.51□□□□□ -0.89
COL6A3-213ENST00000493475 ZNF850A8MQ14 1090 aa9.51□□□□□ -0.89
COL6A3-213ENST00000493475 SIGLEC5O15389 551 aa9.51□□□□□ -0.89
COL6A3-213ENST00000493475 PRODHO43272 600 aa9.51□□□□□ -0.89
COL6A3-213ENST00000493475 ATP8B1O43520 1251 aa9.51□□□□□ -0.89
COL6A3-213ENST00000493475 ATP6V1B1P15313 513 aa9.51□□□□□ -0.89
COL6A3-213ENST00000493475 SAA4P35542 130 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms