RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	MSX2	P35548	267 aa	Predicted RBP	9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	UBE2E1	P51965	193 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	HMGA2	P52926	109 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	SLC25A1	P53007	311 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	SMIM11A	P58511	58 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	MS4A2	Q01362	244 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	GUCA2A	Q02747	115 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	MZT1	Q08AG7	82 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	IKZF1	Q13422	519 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	CRMP1	Q14194	572 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	HERPUD1	Q15011	391 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	FAM76B	Q5HYJ3	339 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	DPY19L4	Q7Z388	723 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	GALNT4	Q8N4A0	578 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	BEND2	Q8NDZ0	799 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	OR9Q2	Q8NGE9	314 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	OR4C15	Q8NGM1	316 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	OR2T4	Q8NH00	348 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	OR4Q3	Q8NH05	313 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	OR5R1	Q8NH85	324 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	ANGPTL6	Q8NI99	470 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	GNPDA2	Q8TDQ7	276 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	HPSE2	Q8WWQ2	592 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	REEP6	Q96HR9	211 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	AMELY	Q99218	206 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	DNTTIP1	Q9H147	329 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	IL1RAP	Q9NPH3	570 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	ZNF222	Q9UK12	451 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	FOXJ3	Q9UPW0	622 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	FAM96B	Q9Y3D0	163 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	RHBDD3	Q9Y3P4	386 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	LYVE1	Q9Y5Y7	322 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	PLXNB1	O43157	2135 aa		9.1	□□□□□ -0.95
PTPN7-204	ENST00000462815	MEIOC	A2RUB1	952 aa		9.09	□□□□□ -0.95
PTPN7-204	ENST00000462815	ANKRD30BL	A7E2S9	258 aa		9.09	□□□□□ -0.95
PTPN7-204	ENST00000462815		M0R1W7	72 aa		9.09	□□□□□ -0.95
PTPN7-204	ENST00000462815	ZNF593	O00488	134 aa	Predicted RBP	9.09	□□□□□ -0.95
PTPN7-204	ENST00000462815	TIPRL	O75663	272 aa		9.09	□□□□□ -0.95
PTPN7-204	ENST00000462815	SPARC	P09486	303 aa		9.09	□□□□□ -0.95
PTPN7-204	ENST00000462815	SPI1	P17947	270 aa		9.09	□□□□□ -0.95
PTPN7-204	ENST00000462815	GRK5	P34947	590 aa		9.09	□□□□□ -0.95
PTPN7-204	ENST00000462815	CX3CR1	P49238	355 aa		9.09	□□□□□ -0.95
PTPN7-204	ENST00000462815	GSK3A	P49840	483 aa		9.09	□□□□□ -0.95
PTPN7-204	ENST00000462815	ACSM1	Q08AH1	577 aa		9.09	□□□□□ -0.95
PTPN7-204	ENST00000462815	TRIM25	Q14258	630 aa	Known RBP	9.09	□□□□□ -0.95
PTPN7-204	ENST00000462815	KRT74	Q7RTS7	529 aa		9.09	□□□□□ -0.95
PTPN7-204	ENST00000462815	SLC36A1	Q7Z2H8	476 aa		9.09	□□□□□ -0.95
PTPN7-204	ENST00000462815	OR5T2	Q8NGG2	359 aa		9.09	□□□□□ -0.95
PTPN7-204	ENST00000462815	OR10Z1	Q8NGY1	313 aa		9.09	□□□□□ -0.95
PTPN7-204	ENST00000462815	OR8S1	Q8NH09	359 aa		9.09	□□□□□ -0.95
PTPN7-204	ENST00000462815	PIFO	Q8TCI5	191 aa		9.09	□□□□□ -0.95
PTPN7-204	ENST00000462815	WIPF2	Q8TF74	440 aa	Predicted RBP	9.09	□□□□□ -0.95
PTPN7-204	ENST00000462815	RNF133	Q8WVZ7	376 aa		9.09	□□□□□ -0.95
PTPN7-204	ENST00000462815	MCUR1	Q96AQ8	359 aa		9.09	□□□□□ -0.95
PTPN7-204	ENST00000462815	PPA2	Q9H2U2	334 aa		9.09	□□□□□ -0.95
PTPN7-204	ENST00000462815	CENPM	Q9NSP4	180 aa		9.09	□□□□□ -0.95
PTPN7-204	ENST00000462815	HAO2	Q9NYQ3	351 aa		9.09	□□□□□ -0.95
PTPN7-204	ENST00000462815	DNAJB11	Q9UBS4	358 aa		9.09	□□□□□ -0.95
PTPN7-204	ENST00000462815	CAB39	Q9Y376	341 aa	Predicted RBP	9.09	□□□□□ -0.95
PTPN7-204	ENST00000462815		H3BUX3	64 aa		9.08	□□□□□ -0.96
PTPN7-204	ENST00000462815	ARPC2	O15144	300 aa		9.08	□□□□□ -0.96
PTPN7-204	ENST00000462815	SIGLEC5	O15389	551 aa		9.08	□□□□□ -0.96
PTPN7-204	ENST00000462815	NDUFB3	O43676	98 aa		9.08	□□□□□ -0.96
PTPN7-204	ENST00000462815	CHST1	O43916	411 aa		9.08	□□□□□ -0.96
PTPN7-204	ENST00000462815	GAST	P01350	101 aa		9.08	□□□□□ -0.96
PTPN7-204	ENST00000462815	FABP3	P05413	133 aa		9.08	□□□□□ -0.96
PTPN7-204	ENST00000462815	GABRA5	P31644	462 aa		9.08	□□□□□ -0.96
PTPN7-204	ENST00000462815	IFNGR2	P38484	337 aa		9.08	□□□□□ -0.96
PTPN7-204	ENST00000462815	OPRL1	P41146	370 aa		9.08	□□□□□ -0.96
PTPN7-204	ENST00000462815	KIR2DS4	P43632	304 aa		9.08	□□□□□ -0.96
PTPN7-204	ENST00000462815	CAV3	P56539	151 aa		9.08	□□□□□ -0.96
PTPN7-204	ENST00000462815	ZNF121	P58317	390 aa	Predicted RBP	9.08	□□□□□ -0.96
PTPN7-204	ENST00000462815	GRB2	P62993	217 aa	Known RBP	9.08	□□□□□ -0.96
PTPN7-204	ENST00000462815	RPL13AP3	Q6NVV1	102 aa		9.08	□□□□□ -0.96
PTPN7-204	ENST00000462815	RASSF6	Q6ZTQ3	369 aa		9.08	□□□□□ -0.96
PTPN7-204	ENST00000462815	CMTM4	Q8IZR5	234 aa		9.08	□□□□□ -0.96
PTPN7-204	ENST00000462815	C11orf42	Q8N5U0	333 aa		9.08	□□□□□ -0.96
PTPN7-204	ENST00000462815	OR5P3	Q8WZ94	311 aa		9.08	□□□□□ -0.96
PTPN7-204	ENST00000462815	RORB	Q92753	470 aa		9.08	□□□□□ -0.96
PTPN7-204	ENST00000462815	RPL3L	Q92901	407 aa	Known RBP	9.08	□□□□□ -0.96
PTPN7-204	ENST00000462815	LYZL4	Q96KX0	146 aa		9.08	□□□□□ -0.96
PTPN7-204	ENST00000462815	MEGF9	Q9H1U4	602 aa		9.08	□□□□□ -0.96
PTPN7-204	ENST00000462815	TOR3A	Q9H497	397 aa		9.08	□□□□□ -0.96
PTPN7-204	ENST00000462815	METTL8	Q9H825	291 aa	Known RBP	9.08	□□□□□ -0.96
PTPN7-204	ENST00000462815	ELL3	Q9HB65	397 aa	Predicted RBP	9.08	□□□□□ -0.96
PTPN7-204	ENST00000462815	SNTG1	Q9NSN8	517 aa		9.08	□□□□□ -0.96
PTPN7-204	ENST00000462815	MAGEL2	Q9UJ55	1249 aa		9.08	□□□□□ -0.96
PTPN7-204	ENST00000462815	POMP	Q9Y244	141 aa		9.08	□□□□□ -0.96
PTPN7-204	ENST00000462815	MAB21L2	Q9Y586	359 aa		9.08	□□□□□ -0.96
PTPN7-204	ENST00000462815	IGKV1D-17	A0A075B6S4	117 aa		9.07	□□□□□ -0.96
PTPN7-204	ENST00000462815	BTBD17	A6NE02	478 aa		9.07	□□□□□ -0.96
PTPN7-204	ENST00000462815	ADARB2-AS1	A8MUL3	147 aa		9.07	□□□□□ -0.96
PTPN7-204	ENST00000462815	TBX1	O43435	398 aa		9.07	□□□□□ -0.96
PTPN7-204	ENST00000462815	CST4	P01036	141 aa		9.07	□□□□□ -0.96
PTPN7-204	ENST00000462815	ACAA1	P09110	424 aa	Predicted RBP	9.07	□□□□□ -0.96
PTPN7-204	ENST00000462815	EEF1B2	P24534	225 aa	Known RBP	9.07	□□□□□ -0.96
PTPN7-204	ENST00000462815	PAX6	P26367	422 aa		9.07	□□□□□ -0.96
PTPN7-204	ENST00000462815	FMO3	P31513	532 aa		9.07	□□□□□ -0.96
PTPN7-204	ENST00000462815	NAA10	P41227	235 aa	Predicted RBP	9.07	□□□□□ -0.96
PTPN7-204	ENST00000462815	MAGEA2	P43356	314 aa		9.07	□□□□□ -0.96

Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms